RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 NUDT3O95989 172 aa8.62□□□□□ -1.03
SDC3-204ENST00000487984 CT45A10P0DMU9 189 aa8.62□□□□□ -1.03
SDC3-204ENST00000487984 FAM3BP58499 235 aaPredicted RBP8.62□□□□□ -1.03
SDC3-204ENST00000487984 MIR17HGQ75NE6 70 aa8.62□□□□□ -1.03
SDC3-204ENST00000487984 ATG101Q9BSB4 218 aa8.62□□□□□ -1.03
SDC3-204ENST00000487984 MANBALQ9NQG1 85 aa8.62□□□□□ -1.03
SDC3-204ENST00000487984 TRBV19A0A075B6N1 114 aa8.61□□□□□ -1.03
SDC3-204ENST00000487984 RAB19A4D1S5 217 aa8.61□□□□□ -1.03
SDC3-204ENST00000487984 J3KRW8 73 aa8.61□□□□□ -1.03
SDC3-204ENST00000487984 HMGB3O15347 200 aaKnown RBP8.61□□□□□ -1.03
SDC3-204ENST00000487984 ZNF253O75346 499 aa8.61□□□□□ -1.03
SDC3-204ENST00000487984 ARL14EPLP0DKL9 152 aa8.61□□□□□ -1.03
SDC3-204ENST00000487984 LEPP41159 167 aa8.61□□□□□ -1.03
SDC3-204ENST00000487984 FGF8P55075 233 aaPredicted RBP8.61□□□□□ -1.03
SDC3-204ENST00000487984 ODF3Q96PU9 254 aa8.61□□□□□ -1.03
SDC3-204ENST00000487984 PAXXQ9BUH6 204 aa8.61□□□□□ -1.03
SDC3-204ENST00000487984 OR51M1Q9H341 326 aa8.61□□□□□ -1.03
SDC3-204ENST00000487984 TMEM14CQ9P0S9 112 aa8.61□□□□□ -1.03
SDC3-204ENST00000487984 DNAH11Q96DT5 4516 aa8.61□□□□□ -1.03
SDC3-204ENST00000487984 PKD1P98161 4303 aa8.61□□□□□ -1.03
SDC3-204ENST00000487984 A0A1B0GV50 99 aa8.6□□□□□ -1.03
SDC3-204ENST00000487984 M0R3E3 92 aa8.6□□□□□ -1.03
SDC3-204ENST00000487984 NDUFB4O95168 129 aa8.6□□□□□ -1.03
SDC3-204ENST00000487984 PYYP10082 97 aa8.6□□□□□ -1.03
SDC3-204ENST00000487984 GCHFRP30047 84 aa8.6□□□□□ -1.03
SDC3-204ENST00000487984 UBE2L3P68036 154 aaKnown RBP8.6□□□□□ -1.03
SDC3-204ENST00000487984 PEA15Q15121 130 aa8.6□□□□□ -1.03
SDC3-204ENST00000487984 C1orf134Q5TEV5 83 aa8.6□□□□□ -1.03
SDC3-204ENST00000487984 UQCC3Q6UW78 93 aa8.6□□□□□ -1.03
SDC3-204ENST00000487984 COMMD7Q86VX2 200 aa8.6□□□□□ -1.03
SDC3-204ENST00000487984 CCDC28AQ8IWP9 274 aa8.6□□□□□ -1.03
SDC3-204ENST00000487984 LINC00612Q8N6U2 182 aa8.6□□□□□ -1.03
SDC3-204ENST00000487984 MRPL53Q96EL3 112 aaKnown RBP8.6□□□□□ -1.03
SDC3-204ENST00000487984 TXNDC17Q9BRA2 123 aa8.6□□□□□ -1.03
SDC3-204ENST00000487984 SMDT1Q9H4I9 107 aa8.6□□□□□ -1.03
SDC3-204ENST00000487984 GNG13Q9P2W3 67 aa8.6□□□□□ -1.03
SDC3-204ENST00000487984 ARL2-SNX15V9GYD0 113 aa8.6□□□□□ -1.03
SDC3-204ENST00000487984 PCLOQ9Y6V0 5065 aa8.6□□□□□ -1.03
SDC3-204ENST00000487984 NACAE9PAV3 2078 aa8.6□□□□□ -1.03
SDC3-204ENST00000487984 TRAV12-3A0A0B4J271 114 aa8.59□□□□□ -1.03
SDC3-204ENST00000487984 HIST1H1EP10412 219 aaKnown RBP8.59□□□□□ -1.03
SDC3-204ENST00000487984 ERCC8Q13216 396 aa8.59□□□□□ -1.03
SDC3-204ENST00000487984 SOHLH1Q5JUK2 328 aa8.59□□□□□ -1.03
SDC3-204ENST00000487984 SSX7Q7RTT5 188 aa8.59□□□□□ -1.03
SDC3-204ENST00000487984 ZNRF2Q8NHG8 242 aa8.59□□□□□ -1.03
SDC3-204ENST00000487984 SUN5Q8TC36 379 aa8.59□□□□□ -1.03
SDC3-204ENST00000487984 FAM167A-AS1Q96KT0 104 aa8.59□□□□□ -1.03
SDC3-204ENST00000487984 FAM210AQ96ND0 272 aa8.59□□□□□ -1.03
SDC3-204ENST00000487984 SLC25A2Q9BXI2 301 aa8.59□□□□□ -1.03
SDC3-204ENST00000487984 NKX6-2Q9C056 277 aaPredicted RBP8.59□□□□□ -1.03
SDC3-204ENST00000487984 EIF5A2Q9GZV4 153 aaKnown RBP8.59□□□□□ -1.03
SDC3-204ENST00000487984 DYNC1H1Q14204 4646 aaKnown RBP8.58□□□□□ -1.04
SDC3-204ENST00000487984 GAGE12BA1L429 117 aa8.58□□□□□ -1.04
SDC3-204ENST00000487984 RBFOX3A6NFN3 312 aa8.58□□□□□ -1.04
SDC3-204ENST00000487984 GAGE7O76087 117 aa8.58□□□□□ -1.04
SDC3-204ENST00000487984 GAGE12FP0CL80 117 aa8.58□□□□□ -1.04
SDC3-204ENST00000487984 GAGE12GP0CL81 117 aa8.58□□□□□ -1.04
SDC3-204ENST00000487984 GAGE12IP0CL82 117 aa8.58□□□□□ -1.04
SDC3-204ENST00000487984 PDE6HQ13956 83 aa8.58□□□□□ -1.04
SDC3-204ENST00000487984 EXOC3-AS1Q8N2X6 119 aa8.58□□□□□ -1.04
SDC3-204ENST00000487984 EIF4E3Q8N5X7 224 aaKnown RBP8.58□□□□□ -1.04
SDC3-204ENST00000487984 BLNKQ8WV28 456 aa8.58□□□□□ -1.04
SDC3-204ENST00000487984 VAX2Q9UIW0 290 aa8.58□□□□□ -1.04
SDC3-204ENST00000487984 LINC00588Q9Y4M8 146 aa8.58□□□□□ -1.04
SDC3-204ENST00000487984 TRAV26-1A0A087WT03 109 aa8.57□□□□□ -1.04
SDC3-204ENST00000487984 NBDYA0A0U1RRE5 68 aa8.57□□□□□ -1.04
SDC3-204ENST00000487984 SNURFLB1AK76 121 aa8.57□□□□□ -1.04
SDC3-204ENST00000487984 NDUFS6O75380 124 aaKnown RBP8.57□□□□□ -1.04
SDC3-204ENST00000487984 SLC25A5P05141 298 aaKnown RBP8.57□□□□□ -1.04
SDC3-204ENST00000487984 NBEAP1P0C6P0 100 aa8.57□□□□□ -1.04
SDC3-204ENST00000487984 MED14OSP0DP75 135 aa8.57□□□□□ -1.04
SDC3-204ENST00000487984 BCL2P10415 239 aa8.57□□□□□ -1.04
SDC3-204ENST00000487984 HOXA5P20719 270 aa8.57□□□□□ -1.04
SDC3-204ENST00000487984 CCL18P55774 89 aa8.57□□□□□ -1.04
SDC3-204ENST00000487984 CCL20P78556 96 aa8.57□□□□□ -1.04
SDC3-204ENST00000487984 OR5I1Q13606 314 aa8.57□□□□□ -1.04
SDC3-204ENST00000487984 TOR2AQ5JU69 321 aa8.57□□□□□ -1.04
SDC3-204ENST00000487984 FAM19A4Q96LR4 140 aa8.57□□□□□ -1.04
SDC3-204ENST00000487984 PYGO2Q9BRQ0 406 aa8.57□□□□□ -1.04
SDC3-204ENST00000487984 AGPAT4-IT1Q9H0P7 198 aa8.57□□□□□ -1.04
SDC3-204ENST00000487984 PRELID1Q9Y255 219 aa8.57□□□□□ -1.04
SDC3-204ENST00000487984 A0A1W2PRE2 83 aa8.56□□□□□ -1.04
SDC3-204ENST00000487984 C7orf71A4D174 169 aa8.56□□□□□ -1.04
SDC3-204ENST00000487984 KLLNB2CW77 178 aa8.56□□□□□ -1.04
SDC3-204ENST00000487984 EIF3GO75821 320 aaKnown RBP eCLIP8.56□□□□□ -1.04
SDC3-204ENST00000487984 OR10J4P0C629 311 aa8.56□□□□□ -1.04
SDC3-204ENST00000487984 DAZ2Q13117 558 aaKnown RBP8.56□□□□□ -1.04
SDC3-204ENST00000487984 ZNF506Q5JVG8 444 aa8.56□□□□□ -1.04
SDC3-204ENST00000487984 CST9LP1Q5W188 147 aa8.56□□□□□ -1.04
SDC3-204ENST00000487984 LYPD1Q8N2G4 141 aa8.56□□□□□ -1.04
SDC3-204ENST00000487984 FXYD5Q96DB9 178 aa8.56□□□□□ -1.04
SDC3-204ENST00000487984 LINC00477Q96M19 166 aa8.56□□□□□ -1.04
SDC3-204ENST00000487984 TCEAL7Q9BRU2 100 aa8.56□□□□□ -1.04
SDC3-204ENST00000487984 TMPRSS5Q9H3S3 457 aa8.56□□□□□ -1.04
SDC3-204ENST00000487984 TREM1Q9NP99 234 aa8.56□□□□□ -1.04
SDC3-204ENST00000487984 IGKV2-40A0A087WW87 121 aaPredicted RBP8.55□□□□□ -1.04
SDC3-204ENST00000487984 A0A0J9YY99 117 aa8.55□□□□□ -1.04
SDC3-204ENST00000487984 PDE6DO43924 150 aa8.55□□□□□ -1.04
SDC3-204ENST00000487984 PAGE4O60829 102 aa8.55□□□□□ -1.04
SDC3-204ENST00000487984 ZNF324O75467 553 aaPredicted RBP8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms