RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 TMEM128Q5BJH2 165 aa5.07□□□□□ -1.6
USP54-211ENST00000474929 IGFL4Q6B9Z1 124 aa5.07□□□□□ -1.6
USP54-211ENST00000474929 AKAP14Q86UN6 197 aa5.07□□□□□ -1.6
USP54-211ENST00000474929 OR1S1Q8NH92 325 aa5.07□□□□□ -1.6
USP54-211ENST00000474929 IL22RA2Q969J5 263 aa5.07□□□□□ -1.6
USP54-211ENST00000474929 TRGV9Q99603 122 aa5.07□□□□□ -1.6
USP54-211ENST00000474929 SLC50A1Q9BRV3 221 aa5.07□□□□□ -1.6
USP54-211ENST00000474929 SHPKQ9UHJ6 478 aa5.07□□□□□ -1.6
USP54-211ENST00000474929 KLF12Q9Y4X4 402 aa5.07□□□□□ -1.6
USP54-211ENST00000474929 URGCP-MRPS24S4R325 110 aa5.07□□□□□ -1.6
USP54-211ENST00000474929 IGHV1OR15-1A0A075B7D0 117 aa5.06□□□□□ -1.6
USP54-211ENST00000474929 KRTAP4-8A0A0G2JLE6 195 aa5.06□□□□□ -1.6
USP54-211ENST00000474929 NAP1L6A6NFF2 107 aa5.06□□□□□ -1.6
USP54-211ENST00000474929 H7C1H1 209 aa5.06□□□□□ -1.6
USP54-211ENST00000474929 PLA2G10O15496 165 aa5.06□□□□□ -1.6
USP54-211ENST00000474929 SFT2D2O95562 160 aa5.06□□□□□ -1.6
USP54-211ENST00000474929 OR10J4P0C629 311 aa5.06□□□□□ -1.6
USP54-211ENST00000474929 ANXA7P20073 488 aaKnown RBP5.06□□□□□ -1.6
USP54-211ENST00000474929 ATP5IP56385 69 aaPredicted RBP5.06□□□□□ -1.6
USP54-211ENST00000474929 SRSF3P84103 164 aaKnown RBP5.06□□□□□ -1.6
USP54-211ENST00000474929 IFITM3Q01628 133 aa5.06□□□□□ -1.6
USP54-211ENST00000474929 ZNF90Q03938 601 aa5.06□□□□□ -1.6
USP54-211ENST00000474929 SMCO1Q147U7 214 aa5.06□□□□□ -1.6
USP54-211ENST00000474929 ELOBQ15370 118 aa5.06□□□□□ -1.6
USP54-211ENST00000474929 NMSQ5H8A3 153 aa5.06□□□□□ -1.6
USP54-211ENST00000474929 LCN15Q6UWW0 184 aa5.06□□□□□ -1.6
USP54-211ENST00000474929 DPPA3Q6W0C5 159 aa5.06□□□□□ -1.6
USP54-211ENST00000474929 Q8TAT8 98 aa5.06□□□□□ -1.6
USP54-211ENST00000474929 DPH3Q96FX2 82 aa5.06□□□□□ -1.6
USP54-211ENST00000474929 GTSF1LQ9H1H1 148 aa5.06□□□□□ -1.6
USP54-211ENST00000474929 RBKSQ9H477 322 aa5.06□□□□□ -1.6
USP54-211ENST00000474929 TRAV4A0A0B4J268 109 aa5.05□□□□□ -1.6
USP54-211ENST00000474929 C9orf170A2RU37 121 aa5.05□□□□□ -1.6
USP54-211ENST00000474929 ATP6V1G1O75348 118 aa5.05□□□□□ -1.6
USP54-211ENST00000474929 MPDU1O75352 247 aa5.05□□□□□ -1.6
USP54-211ENST00000474929 NDUFB6O95139 128 aa5.05□□□□□ -1.6
USP54-211ENST00000474929 IAPPP10997 89 aa5.05□□□□□ -1.6
USP54-211ENST00000474929 GPX4P36969 197 aaPredicted RBP5.05□□□□□ -1.6
USP54-211ENST00000474929 SRPXP78539 464 aa5.05□□□□□ -1.6
USP54-211ENST00000474929 Q0VG73 95 aa5.05□□□□□ -1.6
USP54-211ENST00000474929 C4orf46Q504U0 113 aa5.05□□□□□ -1.6
USP54-211ENST00000474929 MZT2BQ6NZ67 158 aa5.05□□□□□ -1.6
USP54-211ENST00000474929 TEPPQ6URK8 271 aa5.05□□□□□ -1.6
USP54-211ENST00000474929 ZNF431Q8TF32 576 aaPredicted RBP5.05□□□□□ -1.6
USP54-211ENST00000474929 DEDD2Q8WXF8 326 aa5.05□□□□□ -1.6
USP54-211ENST00000474929 ZNF479Q96JC4 524 aa5.05□□□□□ -1.6
USP54-211ENST00000474929 PRADC1Q9BSG0 188 aa5.05□□□□□ -1.6
USP54-211ENST00000474929 U3KQ87 197 aa5.05□□□□□ -1.6
USP54-211ENST00000474929 IGKV1D-37A0A075B6S9 117 aa5.04□□□□□ -1.6
USP54-211ENST00000474929 TRAV6A0A075B6T7 132 aa5.04□□□□□ -1.6
USP54-211ENST00000474929 A0A087WYN8 130 aa5.04□□□□□ -1.6
USP54-211ENST00000474929 J3KRW8 73 aa5.04□□□□□ -1.6
USP54-211ENST00000474929 LYRM1O43325 122 aa5.04□□□□□ -1.6
USP54-211ENST00000474929 OR4E1P0C645 316 aa5.04□□□□□ -1.6
USP54-211ENST00000474929 SFTA3P0C7M3 94 aa5.04□□□□□ -1.6
USP54-211ENST00000474929 BTCP35070 178 aa5.04□□□□□ -1.6
USP54-211ENST00000474929 RAP2BP61225 183 aa5.04□□□□□ -1.6
USP54-211ENST00000474929 CACNG7P62955 275 aa5.04□□□□□ -1.6
USP54-211ENST00000474929 RAB31Q13636 194 aa5.04□□□□□ -1.6
USP54-211ENST00000474929 RHOHQ15669 191 aa5.04□□□□□ -1.6
USP54-211ENST00000474929 ATRAIDQ6UW56 229 aa5.04□□□□□ -1.6
USP54-211ENST00000474929 SDIM1Q6ZPB5 146 aa5.04□□□□□ -1.6
USP54-211ENST00000474929 OR10P1Q8NGE3 313 aa5.04□□□□□ -1.6
USP54-211ENST00000474929 DTD1Q8TEA8 209 aa5.04□□□□□ -1.6
USP54-211ENST00000474929 TMEM170AQ8WVE7 144 aa5.04□□□□□ -1.6
USP54-211ENST00000474929 LINC00479Q96M42 142 aa5.04□□□□□ -1.6
USP54-211ENST00000474929 KRTAP4-12Q9BQ66 201 aa5.04□□□□□ -1.6
USP54-211ENST00000474929 CHCHD7Q9BUK0 85 aa5.04□□□□□ -1.6
USP54-211ENST00000474929 C1orf43Q9BWL3 253 aa5.04□□□□□ -1.6
USP54-211ENST00000474929 PLAC8Q9NZF1 115 aa5.04□□□□□ -1.6
USP54-211ENST00000474929 HSPB7Q9UBY9 170 aa5.04□□□□□ -1.6
USP54-211ENST00000474929 A0A087WWC5 75 aa5.03□□□□□ -1.6
USP54-211ENST00000474929 H3BRN7 92 aa5.03□□□□□ -1.6
USP54-211ENST00000474929 WRBO00258 174 aa5.03□□□□□ -1.6
USP54-211ENST00000474929 CIDEAO60543 219 aa5.03□□□□□ -1.6
USP54-211ENST00000474929 TCRBP04435 133 aa5.03□□□□□ -1.6
USP54-211ENST00000474929 UBE2MP61081 183 aaKnown RBP5.03□□□□□ -1.6
USP54-211ENST00000474929 KCNIP4Q6PIL6 250 aa5.03□□□□□ -1.6
USP54-211ENST00000474929 DAZ4Q86SG3 579 aaKnown RBP5.03□□□□□ -1.6
USP54-211ENST00000474929 OR4C5Q8NGB2 326 aa5.03□□□□□ -1.6
USP54-211ENST00000474929 SPACA4Q8TDM5 124 aa5.03□□□□□ -1.6
USP54-211ENST00000474929 RASL10AQ92737 203 aa5.03□□□□□ -1.6
USP54-211ENST00000474929 SPXQ9BT56 116 aa5.03□□□□□ -1.6
USP54-211ENST00000474929 PARD6GQ9BYG4 376 aaPredicted RBP5.03□□□□□ -1.6
USP54-211ENST00000474929 SDF2L1Q9HCN8 221 aa5.03□□□□□ -1.6
USP54-211ENST00000474929 DAZ3Q9NR90 486 aaKnown RBP5.03□□□□□ -1.6
USP54-211ENST00000474929 GSKIPQ9P0R6 139 aa5.03□□□□□ -1.6
USP54-211ENST00000474929 IGHV3-64A0A075B6Q5 118 aa5.02□□□□□ -1.61
USP54-211ENST00000474929 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.02□□□□□ -1.61
USP54-211ENST00000474929 PIGBOS1A0A0B4J2F0 54 aa5.02□□□□□ -1.61
USP54-211ENST00000474929 FAM240BA0A1B0GVZ2 78 aa5.02□□□□□ -1.61
USP54-211ENST00000474929 DUXBA0A1W2PPF3 345 aa5.02□□□□□ -1.61
USP54-211ENST00000474929 KLLNB2CW77 178 aa5.02□□□□□ -1.61
USP54-211ENST00000474929 MED6O75586 246 aa5.02□□□□□ -1.61
USP54-211ENST00000474929 H2AFB2P0C5Z0 115 aa5.02□□□□□ -1.61
USP54-211ENST00000474929 ORM2P19652 201 aa5.02□□□□□ -1.61
USP54-211ENST00000474929 POLR2GP62487 172 aaKnown RBP eCLIP5.02□□□□□ -1.61
USP54-211ENST00000474929 SPANXN5Q5MJ07 72 aa5.02□□□□□ -1.61
USP54-211ENST00000474929 TCTE3Q8IZS6 198 aa5.02□□□□□ -1.61
USP54-211ENST00000474929 SEC22CQ9BRL7 303 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms