RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 C18orf15Q96N68 181 aa4.76□□□□□ -1.65
HERC4-209ENST00000473533 METTL26Q96S19 204 aa4.76□□□□□ -1.65
HERC4-209ENST00000473533 HIST1H4GQ99525 98 aa4.76□□□□□ -1.65
HERC4-209ENST00000473533 C20orf78Q9BR46 151 aa4.76□□□□□ -1.65
HERC4-209ENST00000473533 TMEM8BA6NDV4 472 aa4.76□□□□□ -1.65
HERC4-209ENST00000473533 MED14OSP0DP75 135 aa4.76□□□□□ -1.65
HERC4-209ENST00000473533 TMEM11P17152 192 aa4.76□□□□□ -1.65
HERC4-209ENST00000473533 RIPPLY3P57055 190 aa4.76□□□□□ -1.65
HERC4-209ENST00000473533 SCGB2A2Q13296 93 aa4.76□□□□□ -1.65
HERC4-209ENST00000473533 SPANXN1Q5VSR9 72 aa4.76□□□□□ -1.65
HERC4-209ENST00000473533 DTX2Q86UW9 622 aa4.76□□□□□ -1.65
HERC4-209ENST00000473533 EEF1AKMT3Q96AZ1 226 aa4.76□□□□□ -1.65
HERC4-209ENST00000473533 NHP2Q9NX24 153 aaKnown RBP4.76□□□□□ -1.65
HERC4-209ENST00000473533 F8VRH5 84 aa4.76□□□□□ -1.65
HERC4-209ENST00000473533 HERVK_113P61574 105 aa4.76□□□□□ -1.65
HERC4-209ENST00000473533 ZNF672Q499Z4 452 aaPredicted RBP4.76□□□□□ -1.65
HERC4-209ENST00000473533 ATP6V0E2Q8NHE4 81 aa4.76□□□□□ -1.65
HERC4-209ENST00000473533 HHLA3Q9XRX5 114 aa4.76□□□□□ -1.65
HERC4-209ENST00000473533 TRBV7-1A0A0A6YYK4 115 aa4.75□□□□□ -1.65
HERC4-209ENST00000473533 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.75□□□□□ -1.65
HERC4-209ENST00000473533 A0A1W2PRD5 423 aa4.75□□□□□ -1.65
HERC4-209ENST00000473533 A0A1W2PRF3 423 aa4.75□□□□□ -1.65
HERC4-209ENST00000473533 A0A1W2PRM7 423 aa4.75□□□□□ -1.65
HERC4-209ENST00000473533 SMKR1H3BMG3 65 aa4.75□□□□□ -1.65
HERC4-209ENST00000473533 M0R381 172 aa4.75□□□□□ -1.65
HERC4-209ENST00000473533 TMEM160Q9NX00 188 aa4.75□□□□□ -1.65
HERC4-209ENST00000473533 NAV3Q8IVL0 2385 aa4.75□□□□□ -1.65
HERC4-209ENST00000473533 DOPEY2Q9Y3R5 2298 aa4.75□□□□□ -1.65
HERC4-209ENST00000473533 IGLL5B9A064 214 aa4.75□□□□□ -1.65
HERC4-209ENST00000473533 KLK10O43240 276 aa4.75□□□□□ -1.65
HERC4-209ENST00000473533 CTSGP08311 255 aa4.75□□□□□ -1.65
HERC4-209ENST00000473533 FXYD2P54710 66 aa4.75□□□□□ -1.65
HERC4-209ENST00000473533 FBXL19-AS1Q494R0 122 aa4.75□□□□□ -1.65
HERC4-209ENST00000473533 GAGE13Q4V321 117 aa4.75□□□□□ -1.65
HERC4-209ENST00000473533 C9orf47Q6ZRZ4 202 aa4.75□□□□□ -1.65
HERC4-209ENST00000473533 C9orf139Q6ZV77 190 aa4.75□□□□□ -1.65
HERC4-209ENST00000473533 PSMG3-AS1Q96PY0 264 aa4.75□□□□□ -1.65
HERC4-209ENST00000473533 TCTAP57738 103 aa4.75□□□□□ -1.65
HERC4-209ENST00000473533 GTSCR1Q86UQ5 136 aa4.75□□□□□ -1.65
HERC4-209ENST00000473533 Q8N6K4 173 aa4.75□□□□□ -1.65
HERC4-209ENST00000473533 Q8TAT8 98 aa4.75□□□□□ -1.65
HERC4-209ENST00000473533 A0A1B0GWB2 263 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 ZNF80P51504 273 aaPredicted RBP4.74□□□□□ -1.65
HERC4-209ENST00000473533 RRN3P1Q2M238 152 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 C12orf74Q32Q52 190 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 VMO1Q7Z5L0 202 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 LINC00477Q96M19 166 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 SMIM2Q9BVW6 85 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 UFC1Q9Y3C8 167 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 MUC6Q6W4X9 2439 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 ATRXP46100 2492 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 IGLV2-18A0A075B6J9 118 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 TRBV7-9A0A0J9YWB2 115 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 MYMXA0A1B0GTQ4 84 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 OVOL1O14753 267 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 HOXA3O43365 443 aaPredicted RBP4.74□□□□□ -1.65
HERC4-209ENST00000473533 BUB3O43684 328 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 DYNAPQ8N1N2 210 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 PHLDA1Q8WV24 401 aaPredicted RBP4.74□□□□□ -1.65
HERC4-209ENST00000473533 MRPL35Q9NZE8 188 aaKnown RBP4.74□□□□□ -1.65
HERC4-209ENST00000473533 SELENOKQ9Y6D0 94 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 PIEZO1Q92508 2521 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 TRAV21A0A0B4J279 112 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 TRAV40A0A0B4J280 105 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 IGHV1-69DA0A0B4J2H0 117 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 TEX48A0A1B0GUV7 120 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 F8W735 103 aaPredicted RBP4.74□□□□□ -1.65
HERC4-209ENST00000473533 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 LCNL1Q6ZST4 164 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 SCGB3A1Q96QR1 104 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 SPATA25Q9BR10 227 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 DPH3P1Q9H4G8 78 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 RAXQ9Y2V3 346 aa4.74□□□□□ -1.65
HERC4-209ENST00000473533 MALRD1Q5VYJ5 2156 aa4.73□□□□□ -1.65
HERC4-209ENST00000473533 GAGE12HA6NDE8 117 aa4.73□□□□□ -1.65
HERC4-209ENST00000473533 SMAD5-AS1Q9Y6J3 95 aa4.73□□□□□ -1.65
HERC4-209ENST00000473533 ASIPP42127 132 aa4.73□□□□□ -1.65
HERC4-209ENST00000473533 FXYD7P58549 80 aa4.73□□□□□ -1.65
HERC4-209ENST00000473533 RPL32P62910 135 aaKnown RBP4.73□□□□□ -1.65
HERC4-209ENST00000473533 OR10J6PQ8NGY7 276 aa4.73□□□□□ -1.65
HERC4-209ENST00000473533 DLX4Q92988 240 aaPredicted RBP4.73□□□□□ -1.65
HERC4-209ENST00000473533 TOMM6Q96B49 74 aa4.73□□□□□ -1.65
HERC4-209ENST00000473533 SPANXB1Q9NS25 103 aaPredicted RBP4.73□□□□□ -1.65
HERC4-209ENST00000473533 SH3BGRL2Q9UJC5 107 aa4.73□□□□□ -1.65
HERC4-209ENST00000473533 SETD2Q9BYW2 2564 aaPredicted RBP4.73□□□□□ -1.65
HERC4-209ENST00000473533 TRBV20-1A0A075B6N2 111 aa4.73□□□□□ -1.65
HERC4-209ENST00000473533 IGKV2D-26A0A0A0MRZ7 120 aa4.73□□□□□ -1.65
HERC4-209ENST00000473533 FAM223BA6NKX1 122 aa4.73□□□□□ -1.65
HERC4-209ENST00000473533 C15orf32Q32M92 178 aa4.73□□□□□ -1.65
HERC4-209ENST00000473533 TM4SF20Q53R12 229 aa4.73□□□□□ -1.65
HERC4-209ENST00000473533 WFDC3Q8IUB2 231 aa4.73□□□□□ -1.65
HERC4-209ENST00000473533 FAM223AQ8IWN6 122 aa4.73□□□□□ -1.65
HERC4-209ENST00000473533 NRACQ8N912 160 aa4.73□□□□□ -1.65
HERC4-209ENST00000473533 NAA38Q9BRA0 125 aaKnown RBP4.73□□□□□ -1.65
HERC4-209ENST00000473533 ZFAND3Q9H8U3 227 aa4.73□□□□□ -1.65
HERC4-209ENST00000473533 CENPVL3A0A0U1RRI6 287 aa4.72□□□□□ -1.65
HERC4-209ENST00000473533 S100A4P26447 101 aaKnown RBP4.72□□□□□ -1.65
HERC4-209ENST00000473533 SUMO2P61956 95 aaKnown RBP4.72□□□□□ -1.65
HERC4-209ENST00000473533 C16orf92Q96LL3 132 aa4.72□□□□□ -1.65
HERC4-209ENST00000473533 AGPAT4-IT1Q9H0P7 198 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms