RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 CRISP2P16562 243 aa9.59□□□□□ -0.87
VPS13D-205ENST00000473099 RAB5AP20339 215 aa9.59□□□□□ -0.87
VPS13D-205ENST00000473099 KRTAP24-1Q3LI83 254 aa9.59□□□□□ -0.87
VPS13D-205ENST00000473099 FAM210BQ96KR6 192 aa9.59□□□□□ -0.87
VPS13D-205ENST00000473099 GPR61Q9BZJ8 451 aa9.59□□□□□ -0.87
VPS13D-205ENST00000473099 SAV1Q9H4B6 383 aaPredicted RBP9.59□□□□□ -0.87
VPS13D-205ENST00000473099 SELENOKQ9Y6D0 94 aa9.59□□□□□ -0.87
VPS13D-205ENST00000473099 SH2D1AO60880 128 aa9.58□□□□□ -0.88
VPS13D-205ENST00000473099 TSPOP30536 169 aa9.58□□□□□ -0.88
VPS13D-205ENST00000473099 LEPP41159 167 aa9.58□□□□□ -0.88
VPS13D-205ENST00000473099 COX19Q49B96 90 aa9.58□□□□□ -0.88
VPS13D-205ENST00000473099 Q6AWC8 147 aa9.58□□□□□ -0.88
VPS13D-205ENST00000473099 LINC00322Q6ZN03 302 aaPredicted RBP9.58□□□□□ -0.88
VPS13D-205ENST00000473099 APRG1Q8IVJ8 170 aa9.58□□□□□ -0.88
VPS13D-205ENST00000473099 OR2D3Q8NGH3 330 aa9.58□□□□□ -0.88
VPS13D-205ENST00000473099 FAM19A4Q96LR4 140 aa9.58□□□□□ -0.88
VPS13D-205ENST00000473099 FAM110AQ9BQ89 295 aa9.58□□□□□ -0.88
VPS13D-205ENST00000473099 MCRIP2Q9BUT9 160 aaKnown RBP9.58□□□□□ -0.88
VPS13D-205ENST00000473099 ZNF747Q9BV97 191 aa9.58□□□□□ -0.88
VPS13D-205ENST00000473099 NAT8BQ9UHF3 227 aa9.58□□□□□ -0.88
VPS13D-205ENST00000473099 ZNF256Q9Y2P7 627 aaPredicted RBP9.58□□□□□ -0.88
VPS13D-205ENST00000473099 TGIF2-C20orf24A0A0A6YYL0 155 aa9.57□□□□□ -0.88
VPS13D-205ENST00000473099 TMEM189A5PLL7 270 aa9.57□□□□□ -0.88
VPS13D-205ENST00000473099 TYMSP04818 313 aa9.57□□□□□ -0.88
VPS13D-205ENST00000473099 CXCL1P09341 107 aa9.57□□□□□ -0.88
VPS13D-205ENST00000473099 CRIP1P50238 77 aa9.57□□□□□ -0.88
VPS13D-205ENST00000473099 C9orf66Q5T8R8 295 aa9.57□□□□□ -0.88
VPS13D-205ENST00000473099 TRAV21A0A0B4J279 112 aa9.56□□□□□ -0.88
VPS13D-205ENST00000473099 IZUMO1RA6ND01 250 aa9.56□□□□□ -0.88
VPS13D-205ENST00000473099 A8MTW9 85 aa9.56□□□□□ -0.88
VPS13D-205ENST00000473099 F6UB75 175 aa9.56□□□□□ -0.88
VPS13D-205ENST00000473099 GPX1P07203 203 aa9.56□□□□□ -0.88
VPS13D-205ENST00000473099 ZNF705DP0CH99 300 aaPredicted RBP9.56□□□□□ -0.88
VPS13D-205ENST00000473099 ZNF705BP0CI00 300 aaPredicted RBP9.56□□□□□ -0.88
VPS13D-205ENST00000473099 PRB4P10163 310 aaPredicted RBP9.56□□□□□ -0.88
VPS13D-205ENST00000473099 HLA-DRB4P13762 266 aa9.56□□□□□ -0.88
VPS13D-205ENST00000473099 FAM3BP58499 235 aaPredicted RBP9.56□□□□□ -0.88
VPS13D-205ENST00000473099 DEFB131AP59861 70 aa9.56□□□□□ -0.88
VPS13D-205ENST00000473099 RASL11AQ6T310 242 aa9.56□□□□□ -0.88
VPS13D-205ENST00000473099 CLUHP3Q96NS8 147 aa9.56□□□□□ -0.88
VPS13D-205ENST00000473099 SRD5A3Q9H8P0 318 aa9.56□□□□□ -0.88
VPS13D-205ENST00000473099 MAP6D1Q9H9H5 199 aa9.56□□□□□ -0.88
VPS13D-205ENST00000473099 HLA-DRB4X5D2U9 266 aa9.56□□□□□ -0.88
VPS13D-205ENST00000473099 RPS10P46783 165 aaKnown RBP9.55□□□□□ -0.88
VPS13D-205ENST00000473099 ZNF80P51504 273 aaPredicted RBP9.55□□□□□ -0.88
VPS13D-205ENST00000473099 FOXA3P55318 350 aaPredicted RBP9.55□□□□□ -0.88
VPS13D-205ENST00000473099 LINC01559Q495D7 138 aa9.55□□□□□ -0.88
VPS13D-205ENST00000473099 SHISA2Q6UWI4 295 aa9.55□□□□□ -0.88
VPS13D-205ENST00000473099 ATP5L2Q7Z4Y8 100 aa9.55□□□□□ -0.88
VPS13D-205ENST00000473099 ZFAND2AQ8N6M9 145 aa9.55□□□□□ -0.88
VPS13D-205ENST00000473099 NEU1Q99519 415 aa9.55□□□□□ -0.88
VPS13D-205ENST00000473099 HIGD1CA8MV81 97 aa9.54□□□□□ -0.88
VPS13D-205ENST00000473099 C1orf196B1AJZ1 125 aa9.54□□□□□ -0.88
VPS13D-205ENST00000473099 KLLNB2CW77 178 aa9.54□□□□□ -0.88
VPS13D-205ENST00000473099 OR11H12B2RN74 326 aa9.54□□□□□ -0.88
VPS13D-205ENST00000473099 CA1P00915 261 aaPredicted RBP9.54□□□□□ -0.88
VPS13D-205ENST00000473099 ORM1P02763 201 aa9.54□□□□□ -0.88
VPS13D-205ENST00000473099 WDR73Q6P4I2 378 aa9.54□□□□□ -0.88
VPS13D-205ENST00000473099 C12orf54Q6X4T0 127 aa9.54□□□□□ -0.88
VPS13D-205ENST00000473099 C3orf56Q8N813 242 aa9.54□□□□□ -0.88
VPS13D-205ENST00000473099 MT-ND6P03923 174 aa9.53□□□□□ -0.88
VPS13D-205ENST00000473099 CD33P20138 364 aa9.53□□□□□ -0.88
VPS13D-205ENST00000473099 CDKN1BP46527 198 aa9.53□□□□□ -0.88
VPS13D-205ENST00000473099 TCL1AP56279 114 aa9.53□□□□□ -0.88
VPS13D-205ENST00000473099 DEFB1P60022 68 aa9.53□□□□□ -0.88
VPS13D-205ENST00000473099 RAB5BP61020 215 aa9.53□□□□□ -0.88
VPS13D-205ENST00000473099 BEAN1Q3B7T3 259 aa9.53□□□□□ -0.88
VPS13D-205ENST00000473099 GDF5OSQ5U4N7 250 aa9.53□□□□□ -0.88
VPS13D-205ENST00000473099 NUP35Q8NFH5 326 aa9.53□□□□□ -0.88
VPS13D-205ENST00000473099 BORCS7Q96B45 105 aa9.53□□□□□ -0.88
VPS13D-205ENST00000473099 A0A1B0GW15 77 aa9.52□□□□□ -0.89
VPS13D-205ENST00000473099 H3BMM0 161 aa9.52□□□□□ -0.89
VPS13D-205ENST00000473099 AMBPP02760 352 aa9.52□□□□□ -0.89
VPS13D-205ENST00000473099 S100A8P05109 93 aa9.52□□□□□ -0.89
VPS13D-205ENST00000473099 ODF3L2Q3SX64 289 aa9.52□□□□□ -0.89
VPS13D-205ENST00000473099 ACTL10Q5JWF8 245 aa9.52□□□□□ -0.89
VPS13D-205ENST00000473099 WFDC9Q8NEX5 89 aa9.52□□□□□ -0.89
VPS13D-205ENST00000473099 GNB1LQ9BYB4 327 aa9.52□□□□□ -0.89
VPS13D-205ENST00000473099 C7orf71A4D174 169 aa9.51□□□□□ -0.89
VPS13D-205ENST00000473099 RNASE4P34096 147 aaKnown RBP9.51□□□□□ -0.89
VPS13D-205ENST00000473099 AMTNQ6UX39 209 aa9.51□□□□□ -0.89
VPS13D-205ENST00000473099 GTSF1Q8WW33 167 aa9.51□□□□□ -0.89
VPS13D-205ENST00000473099 KCNS1Q96KK3 526 aa9.51□□□□□ -0.89
VPS13D-205ENST00000473099 TMA7Q9Y2S6 64 aaKnown RBP9.51□□□□□ -0.89
VPS13D-205ENST00000473099 ANK2Q01484 3957 aa9.51□□□□□ -0.89
VPS13D-205ENST00000473099 A0A1B0GUT8 65 aa9.5□□□□□ -0.89
VPS13D-205ENST00000473099 KNCNA6PVL3 124 aa9.5□□□□□ -0.89
VPS13D-205ENST00000473099 F2Z2F3 143 aa9.5□□□□□ -0.89
VPS13D-205ENST00000473099 HLA-DQA1P01909 254 aa9.5□□□□□ -0.89
VPS13D-205ENST00000473099 RIGQ13278 110 aa9.5□□□□□ -0.89
VPS13D-205ENST00000473099 PRR9Q5T870 116 aa9.5□□□□□ -0.89
VPS13D-205ENST00000473099 STHQ8IWL8 128 aa9.5□□□□□ -0.89
VPS13D-205ENST00000473099 FER1L6-AS1Q8NA97 138 aa9.5□□□□□ -0.89
VPS13D-205ENST00000473099 C20orf144Q9BQM9 153 aa9.5□□□□□ -0.89
VPS13D-205ENST00000473099 WIPF1O43516 503 aa9.49□□□□□ -0.89
VPS13D-205ENST00000473099 IGKV3-20P01619 116 aa9.49□□□□□ -0.89
VPS13D-205ENST00000473099 IGLC6P0CF74 106 aa9.49□□□□□ -0.89
VPS13D-205ENST00000473099 MED14OSP0DP75 135 aa9.49□□□□□ -0.89
VPS13D-205ENST00000473099 CTRLP40313 264 aa9.49□□□□□ -0.89
VPS13D-205ENST00000473099 NUTF2P61970 127 aaKnown RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms