RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	TFAM	Q00059	246 aa	Known RBP	0.39	□□□□□ -2.35
PTCD3-209	ENST00000472044	XAF1	Q6GPH4	301 aa		0.39	□□□□□ -2.35
PTCD3-209	ENST00000472044	TOMM20L	Q6UXN7	152 aa		0.39	□□□□□ -2.35
PTCD3-209	ENST00000472044	TCTEX1D1	Q8N7M0	179 aa		0.39	□□□□□ -2.35
PTCD3-209	ENST00000472044	TMEM229B	Q8NBD8	167 aa		0.39	□□□□□ -2.35
PTCD3-209	ENST00000472044	FAM103A1	Q9BTL3	118 aa	Known RBP	0.39	□□□□□ -2.35
PTCD3-209	ENST00000472044	C19orf12	Q9NSK7	152 aa		0.39	□□□□□ -2.35
PTCD3-209	ENST00000472044	AFDN	P55196	1824 aa	Known RBP	0.38	□□□□□ -2.35
PTCD3-209	ENST00000472044	ARL5C	A6NH57	179 aa		0.38	□□□□□ -2.35
PTCD3-209	ENST00000472044		H3BMG7	143 aa		0.38	□□□□□ -2.35
PTCD3-209	ENST00000472044	CAV3	P56539	151 aa		0.38	□□□□□ -2.35
PTCD3-209	ENST00000472044	C3orf62	Q6ZUJ4	267 aa		0.38	□□□□□ -2.35
PTCD3-209	ENST00000472044	DEFB132	Q7Z7B7	95 aa		0.38	□□□□□ -2.35
PTCD3-209	ENST00000472044	TEX29	Q8N6K0	151 aa		0.38	□□□□□ -2.35
PTCD3-209	ENST00000472044	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	0.38	□□□□□ -2.35
PTCD3-209	ENST00000472044	NAV2	Q8IVL1	2488 aa		0.38	□□□□□ -2.35
PTCD3-209	ENST00000472044	DSPP	Q9NZW4	1301 aa		0.38	□□□□□ -2.35
PTCD3-209	ENST00000472044	A2M	P01023	1474 aa		0.37	□□□□□ -2.35
PTCD3-209	ENST00000472044	LOC107984640	A0A0U1RRK4	108 aa		0.37	□□□□□ -2.35
PTCD3-209	ENST00000472044		A0A1W2PPB8	328 aa		0.37	□□□□□ -2.35
PTCD3-209	ENST00000472044		A0A1W2PRS3	328 aa		0.37	□□□□□ -2.35
PTCD3-209	ENST00000472044	BBIP1	A8MTZ0	92 aa		0.37	□□□□□ -2.35
PTCD3-209	ENST00000472044	KIR3DP1	A8MWS1	328 aa		0.37	□□□□□ -2.35
PTCD3-209	ENST00000472044	KRTAP2-3	P0C7H8	128 aa		0.37	□□□□□ -2.35
PTCD3-209	ENST00000472044	RPS3	P23396	243 aa	Known RBP eCLIP	0.37	□□□□□ -2.35
PTCD3-209	ENST00000472044	OR51A4	Q8NGJ6	313 aa		0.37	□□□□□ -2.35
PTCD3-209	ENST00000472044	NAT14	Q8WUY8	206 aa		0.37	□□□□□ -2.35
PTCD3-209	ENST00000472044	KRTAP2-4	Q9BYR9	128 aa		0.37	□□□□□ -2.35
PTCD3-209	ENST00000472044	KRTAP2-1	Q9BYU5	128 aa		0.37	□□□□□ -2.35
PTCD3-209	ENST00000472044	CBLN4	Q9NTU7	201 aa		0.37	□□□□□ -2.35
PTCD3-209	ENST00000472044	FKBP11	Q9NYL4	201 aa		0.37	□□□□□ -2.35
PTCD3-209	ENST00000472044	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	0.36	□□□□□ -2.35
PTCD3-209	ENST00000472044	RPL7	P18124	248 aa	Known RBP	0.36	□□□□□ -2.35
PTCD3-209	ENST00000472044	CRYGS	P22914	178 aa		0.36	□□□□□ -2.35
PTCD3-209	ENST00000472044	CSAG1	Q6PB30	78 aa		0.36	□□□□□ -2.35
PTCD3-209	ENST00000472044	OR9Q1	Q8NGQ5	310 aa		0.36	□□□□□ -2.35
PTCD3-209	ENST00000472044	DDA1	Q9BW61	102 aa		0.36	□□□□□ -2.35
PTCD3-209	ENST00000472044	MRPL35	Q9NZE8	188 aa	Known RBP	0.36	□□□□□ -2.35
PTCD3-209	ENST00000472044	MEGF8	Q7Z7M0	2845 aa		0.36	□□□□□ -2.35
PTCD3-209	ENST00000472044	TNC	P24821	2201 aa		0.36	□□□□□ -2.35
PTCD3-209	ENST00000472044	IFITM5	A6NNB3	132 aa		0.35	□□□□□ -2.35
PTCD3-209	ENST00000472044	IGF2	P01344	180 aa		0.35	□□□□□ -2.35
PTCD3-209	ENST00000472044	IFNA21	P01568	189 aa		0.35	□□□□□ -2.35
PTCD3-209	ENST00000472044	SLC25A4	P12235	298 aa		0.35	□□□□□ -2.35
PTCD3-209	ENST00000472044	EVI2A	P22794	236 aa		0.35	□□□□□ -2.35
PTCD3-209	ENST00000472044	SNRPD3	P62318	126 aa	Known RBP	0.35	□□□□□ -2.35
PTCD3-209	ENST00000472044	QRFP	P83859	136 aa		0.35	□□□□□ -2.35
PTCD3-209	ENST00000472044	GLYATL3	Q5SZD4	288 aa		0.35	□□□□□ -2.35
PTCD3-209	ENST00000472044	TRAPPC2L	Q9UL33	140 aa		0.35	□□□□□ -2.35
PTCD3-209	ENST00000472044	NEFH	P12036	1026 aa		0.34	□□□□□ -2.36
PTCD3-209	ENST00000472044	KDELR1	P24390	212 aa		0.34	□□□□□ -2.36
PTCD3-209	ENST00000472044	ETV6	P41212	452 aa		0.34	□□□□□ -2.36
PTCD3-209	ENST00000472044	SPINK13	Q1W4C9	94 aa		0.34	□□□□□ -2.36
PTCD3-209	ENST00000472044	ASB16-AS1	Q495Z4	193 aa		0.34	□□□□□ -2.36
PTCD3-209	ENST00000472044	TMEM128	Q5BJH2	165 aa		0.34	□□□□□ -2.36
PTCD3-209	ENST00000472044	SAMD13	Q5VXD3	122 aa		0.34	□□□□□ -2.36
PTCD3-209	ENST00000472044	OR5A2	Q8NGI9	324 aa		0.34	□□□□□ -2.36
PTCD3-209	ENST00000472044	ESPL1	Q14674	2120 aa		0.34	□□□□□ -2.36
PTCD3-209	ENST00000472044	KIDINS220	Q9ULH0	1771 aa		0.33	□□□□□ -2.36
PTCD3-209	ENST00000472044	DLEC1	Q9Y238	1755 aa		0.33	□□□□□ -2.36
PTCD3-209	ENST00000472044	LOC107984156	A0A0G2JMH3	177 aa		0.33	□□□□□ -2.36
PTCD3-209	ENST00000472044	NBDY	A0A0U1RRE5	68 aa		0.33	□□□□□ -2.36
PTCD3-209	ENST00000472044	PRORSD1P	A6NEY8	169 aa		0.33	□□□□□ -2.36
PTCD3-209	ENST00000472044	PGRMC1	O00264	195 aa	Known RBP	0.33	□□□□□ -2.36
PTCD3-209	ENST00000472044	EDF1	O60869	148 aa	Known RBP	0.33	□□□□□ -2.36
PTCD3-209	ENST00000472044	RPL22	P35268	128 aa	Known RBP	0.33	□□□□□ -2.36
PTCD3-209	ENST00000472044	LSM3	P62310	102 aa	Known RBP	0.33	□□□□□ -2.36
PTCD3-209	ENST00000472044	BLCAP	P62952	87 aa		0.33	□□□□□ -2.36
PTCD3-209	ENST00000472044	FXYD3	Q14802	87 aa		0.33	□□□□□ -2.36
PTCD3-209	ENST00000472044	ARL17A	Q8IVW1	177 aa		0.33	□□□□□ -2.36
PTCD3-209	ENST00000472044	OR8J3	Q8NGG0	315 aa		0.33	□□□□□ -2.36
PTCD3-209	ENST00000472044	CCDC115	Q96NT0	180 aa		0.33	□□□□□ -2.36
PTCD3-209	ENST00000472044	MAP2	P11137	1827 aa	Known RBP	0.33	□□□□□ -2.36
PTCD3-209	ENST00000472044	HBD	P02042	147 aa		0.32	□□□□□ -2.36
PTCD3-209	ENST00000472044	GTF2A1	P52655	376 aa	Predicted RBP	0.32	□□□□□ -2.36
PTCD3-209	ENST00000472044	RPL37	P61927	97 aa	Known RBP	0.32	□□□□□ -2.36
PTCD3-209	ENST00000472044	LINC00208	Q96KT6	92 aa		0.32	□□□□□ -2.36
PTCD3-209	ENST00000472044	MRPL36	Q9P0J6	103 aa	Known RBP	0.32	□□□□□ -2.36
PTCD3-209	ENST00000472044	BDP1	A6H8Y1	2624 aa		0.32	□□□□□ -2.36
PTCD3-209	ENST00000472044	MED23	Q9ULK4	1368 aa		0.32	□□□□□ -2.36
PTCD3-209	ENST00000472044	PTPRG	P23470	1445 aa		0.31	□□□□□ -2.36
PTCD3-209	ENST00000472044	RREB1	Q92766	1687 aa		0.31	□□□□□ -2.36
PTCD3-209	ENST00000472044	HELZ	P42694	1942 aa	Known RBP	0.31	□□□□□ -2.36
PTCD3-209	ENST00000472044	TMEM30CP	A0ZSE6	113 aa		0.31	□□□□□ -2.36
PTCD3-209	ENST00000472044	TMEM189	A5PLL7	270 aa		0.31	□□□□□ -2.36
PTCD3-209	ENST00000472044	HIGD1C	A8MV81	97 aa		0.31	□□□□□ -2.36
PTCD3-209	ENST00000472044		M0QZK8	103 aa		0.31	□□□□□ -2.36
PTCD3-209	ENST00000472044	UQCRQ	O14949	82 aa		0.31	□□□□□ -2.36
PTCD3-209	ENST00000472044	LY6G6C	O95867	125 aa		0.31	□□□□□ -2.36
PTCD3-209	ENST00000472044	C5orf56	Q8N8D9	126 aa		0.31	□□□□□ -2.36
PTCD3-209	ENST00000472044	BRK1	Q8WUW1	75 aa		0.31	□□□□□ -2.36
PTCD3-209	ENST00000472044	SMIM7	Q9BQ49	75 aa		0.31	□□□□□ -2.36
PTCD3-209	ENST00000472044	RBBP6	Q7Z6E9	1792 aa	Known RBP	0.3	□□□□□ -2.36
PTCD3-209	ENST00000472044	RHOH	Q15669	191 aa		0.3	□□□□□ -2.36
PTCD3-209	ENST00000472044	LYPD5	Q6UWN5	251 aa		0.3	□□□□□ -2.36
PTCD3-209	ENST00000472044	SMIM15	Q7Z3B0	74 aa		0.3	□□□□□ -2.36
PTCD3-209	ENST00000472044	DMAC1	Q96GE9	116 aa		0.3	□□□□□ -2.36
PTCD3-209	ENST00000472044	COMMD3	Q9UBI1	195 aa		0.3	□□□□□ -2.36
PTCD3-209	ENST00000472044	PLXNA2	O75051	1894 aa		0.3	□□□□□ -2.36
PTCD3-209	ENST00000472044	SPAG17	Q6Q759	2223 aa		0.3	□□□□□ -2.36

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