RNA–Protein interactions for RNA: ENST00000470588.1

SMARCD3-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,755 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-206ENST00000470588 DUX5Q96PT3 197 aa12.86□□□□□ -0.35
SMARCD3-206ENST00000470588 DNAJC9-AS1A6NH13 148 aa12.85□□□□□ -0.35
SMARCD3-206ENST00000470588 RPLP1P05386 114 aaKnown RBP12.85□□□□□ -0.35
SMARCD3-206ENST00000470588 RPL11P62913 178 aaKnown RBP12.85□□□□□ -0.35
SMARCD3-206ENST00000470588 SAMD13Q5VXD3 122 aa12.85□□□□□ -0.35
SMARCD3-206ENST00000470588 RNF152Q8N8N0 203 aa12.85□□□□□ -0.35
SMARCD3-206ENST00000470588 HSBP1O75506 76 aa12.84□□□□□ -0.35
SMARCD3-206ENST00000470588 PMCHP20382 165 aa12.84□□□□□ -0.35
SMARCD3-206ENST00000470588 OR10J6PQ8NGY7 276 aa12.84□□□□□ -0.35
SMARCD3-206ENST00000470588 UBE2E2Q96LR5 201 aa12.84□□□□□ -0.35
SMARCD3-206ENST00000470588 TSTD3H0UI37 97 aa12.84□□□□□ -0.35
SMARCD3-206ENST00000470588 LGALS1P09382 135 aaKnown RBP12.84□□□□□ -0.35
SMARCD3-206ENST00000470588 SRD5A1P18405 259 aa12.84□□□□□ -0.35
SMARCD3-206ENST00000470588 ZNF418Q8TF45 676 aaPredicted RBP12.84□□□□□ -0.35
SMARCD3-206ENST00000470588 CHCHD1Q96BP2 118 aaKnown RBP12.84□□□□□ -0.35
SMARCD3-206ENST00000470588 ZNF705DP0CH99 300 aaPredicted RBP12.83□□□□□ -0.36
SMARCD3-206ENST00000470588 ZNF705BP0CI00 300 aaPredicted RBP12.83□□□□□ -0.36
SMARCD3-206ENST00000470588 CSMD1Q96PZ7 3565 aa12.82□□□□□ -0.36
SMARCD3-206ENST00000470588 ID1P41134 155 aa12.82□□□□□ -0.36
SMARCD3-206ENST00000470588 PRR31Q5SQ13 230 aa12.82□□□□□ -0.36
SMARCD3-206ENST00000470588 FAM104BQ5XKR9 115 aa12.82□□□□□ -0.36
SMARCD3-206ENST00000470588 RNASEKQ6P5S7 137 aaKnown RBP12.82□□□□□ -0.36
SMARCD3-206ENST00000470588 REC114Q7Z4M0 266 aa12.82□□□□□ -0.36
SMARCD3-206ENST00000470588 FAM19A2Q8N3H0 131 aa12.82□□□□□ -0.36
SMARCD3-206ENST00000470588 ZNF664Q8N3J9 261 aa12.82□□□□□ -0.36
SMARCD3-206ENST00000470588 TMEM213A2RRL7 107 aa12.81□□□□□ -0.36
SMARCD3-206ENST00000470588 LGALS9O00182 355 aa12.81□□□□□ -0.36
SMARCD3-206ENST00000470588 NTF3P20783 257 aa12.81□□□□□ -0.36
SMARCD3-206ENST00000470588 URB1-AS1Q96HZ7 61 aa12.81□□□□□ -0.36
SMARCD3-206ENST00000470588 CNFNQ9BYD5 112 aa12.81□□□□□ -0.36
SMARCD3-206ENST00000470588 IGKV3D-20A0A0C4DH25 116 aa12.81□□□□□ -0.36
SMARCD3-206ENST00000470588 LY6G6DO95868 133 aa12.81□□□□□ -0.36
SMARCD3-206ENST00000470588 LINC00614P0C842 121 aa12.81□□□□□ -0.36
SMARCD3-206ENST00000470588 CD33P20138 364 aa12.81□□□□□ -0.36
SMARCD3-206ENST00000470588 TWIST1Q15672 202 aa12.81□□□□□ -0.36
SMARCD3-206ENST00000470588 PRO1933Q9H354 126 aa12.81□□□□□ -0.36
SMARCD3-206ENST00000470588 U3KQK5 164 aa12.81□□□□□ -0.36
SMARCD3-206ENST00000470588 TRBV7-9A0A0J9YWB2 115 aa12.8□□□□□ -0.36
SMARCD3-206ENST00000470588 M0R2Z0 102 aa12.8□□□□□ -0.36
SMARCD3-206ENST00000470588 KRTDAPP60985 99 aa12.8□□□□□ -0.36
SMARCD3-206ENST00000470588 FAM181BA6NEQ2 426 aa12.79□□□□□ -0.36
SMARCD3-206ENST00000470588 RAB4AP20338 218 aa12.79□□□□□ -0.36
SMARCD3-206ENST00000470588 OR8A1Q8NGG7 326 aa12.79□□□□□ -0.36
SMARCD3-206ENST00000470588 C11orf21Q9P2W6 132 aa12.79□□□□□ -0.36
SMARCD3-206ENST00000470588 TEX43Q6ZNM6 134 aa12.79□□□□□ -0.36
SMARCD3-206ENST00000470588 FAM19A4Q96LR4 140 aa12.79□□□□□ -0.36
SMARCD3-206ENST00000470588 JMJD8Q96S16 334 aa12.79□□□□□ -0.36
SMARCD3-206ENST00000470588 SMR3AQ99954 134 aa12.79□□□□□ -0.36
SMARCD3-206ENST00000470588 TMEM191AQ9H0A3 160 aa12.79□□□□□ -0.36
SMARCD3-206ENST00000470588 AKAP9Q99996 3911 aa12.78□□□□□ -0.36
SMARCD3-206ENST00000470588 C3orf79P0CE67 100 aa12.78□□□□□ -0.36
SMARCD3-206ENST00000470588 FOSL1P15407 271 aa12.78□□□□□ -0.36
SMARCD3-206ENST00000470588 ZFAND2AQ8N6M9 145 aa12.78□□□□□ -0.36
SMARCD3-206ENST00000470588 TLN2Q9Y4G6 2542 aa12.78□□□□□ -0.36
SMARCD3-206ENST00000470588 IGKV3-7A0A075B6H7 116 aa12.77□□□□□ -0.36
SMARCD3-206ENST00000470588 IGHV4OR15-8A0A075B7B6 117 aa12.77□□□□□ -0.36
SMARCD3-206ENST00000470588 A0A087WW49 117 aa12.77□□□□□ -0.36
SMARCD3-206ENST00000470588 RNASE1P07998 156 aaKnown RBP12.77□□□□□ -0.36
SMARCD3-206ENST00000470588 SSTP61278 116 aa12.77□□□□□ -0.36
SMARCD3-206ENST00000470588 DCANP1Q8TF63 244 aa12.77□□□□□ -0.36
SMARCD3-206ENST00000470588 RNF114Q9Y508 228 aa12.77□□□□□ -0.36
SMARCD3-206ENST00000470588 MYO9AB2RTY4 2548 aa12.77□□□□□ -0.36
SMARCD3-206ENST00000470588 TRAV21A0A0B4J279 112 aa12.76□□□□□ -0.37
SMARCD3-206ENST00000470588 MUC21A0A0G2JKD1 596 aa12.76□□□□□ -0.37
SMARCD3-206ENST00000470588 MUC21A0A140T8X8 626 aa12.76□□□□□ -0.37
SMARCD3-206ENST00000470588 OR5AL1P0C617 328 aa12.76□□□□□ -0.37
SMARCD3-206ENST00000470588 EDN2P20800 178 aa12.76□□□□□ -0.37
SMARCD3-206ENST00000470588 DDTP30046 118 aa12.76□□□□□ -0.37
SMARCD3-206ENST00000470588 MRPL51Q4U2R6 128 aaKnown RBP12.76□□□□□ -0.37
SMARCD3-206ENST00000470588 MUC21Q5SSG8 566 aa12.76□□□□□ -0.37
SMARCD3-206ENST00000470588 Q6ZSV7 163 aa12.76□□□□□ -0.37
SMARCD3-206ENST00000470588 AMN1Q8IY45 258 aa12.76□□□□□ -0.37
SMARCD3-206ENST00000470588 Q8N976 141 aa12.76□□□□□ -0.37
SMARCD3-206ENST00000470588 ESM1Q9NQ30 184 aa12.76□□□□□ -0.37
SMARCD3-206ENST00000470588 MXRA5Q9NR99 2828 aa12.76□□□□□ -0.37
SMARCD3-206ENST00000470588 ZFHX3Q15911 3703 aa12.76□□□□□ -0.37
SMARCD3-206ENST00000470588 SYNJ2BPP57105 145 aa12.76□□□□□ -0.37
SMARCD3-206ENST00000470588 APRG1Q8IVJ8 170 aa12.76□□□□□ -0.37
SMARCD3-206ENST00000470588 ORMDL3Q8N138 153 aa12.76□□□□□ -0.37
SMARCD3-206ENST00000470588 KLHDC1Q8N7A1 406 aa12.76□□□□□ -0.37
SMARCD3-206ENST00000470588 PRELID3AQ96N28 172 aa12.76□□□□□ -0.37
SMARCD3-206ENST00000470588 ZNF469Q96JG9 3925 aaPredicted RBP12.76□□□□□ -0.37
SMARCD3-206ENST00000470588 M0QZ24 198 aa12.75□□□□□ -0.37
SMARCD3-206ENST00000470588 HOXD3P31249 432 aaPredicted RBP12.75□□□□□ -0.37
SMARCD3-206ENST00000470588 HILS1P60008 231 aa12.75□□□□□ -0.37
SMARCD3-206ENST00000470588 PRR9Q5T870 116 aa12.75□□□□□ -0.37
SMARCD3-206ENST00000470588 MS4A6AQ9H2W1 248 aa12.75□□□□□ -0.37
SMARCD3-206ENST00000470588 D6R8Y8 96 aa12.74□□□□□ -0.37
SMARCD3-206ENST00000470588 CACNG7P62955 275 aa12.74□□□□□ -0.37
SMARCD3-206ENST00000470588 WFDC3Q8IUB2 231 aa12.74□□□□□ -0.37
SMARCD3-206ENST00000470588 PRSS3P2Q8NHM4 247 aa12.74□□□□□ -0.37
SMARCD3-206ENST00000470588 IGHV4-4A0A075B6R2 117 aa12.74□□□□□ -0.37
SMARCD3-206ENST00000470588 SNAI2O43623 268 aa12.74□□□□□ -0.37
SMARCD3-206ENST00000470588 PPBPP02775 128 aa12.74□□□□□ -0.37
SMARCD3-206ENST00000470588 BTF3P20290 206 aaKnown RBP12.74□□□□□ -0.37
SMARCD3-206ENST00000470588 DEFA6Q01524 100 aa12.74□□□□□ -0.37
SMARCD3-206ENST00000470588 MSRB1Q9NZV6 116 aa12.74□□□□□ -0.37
SMARCD3-206ENST00000470588 IGHV1-24A0A0C4DH33 117 aa12.73□□□□□ -0.37
SMARCD3-206ENST00000470588 F6UB75 175 aa12.73□□□□□ -0.37
SMARCD3-206ENST00000470588 CSN3P07498 182 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms