RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 LENEPQ9Y5L5 61 aa10.7□□□□□ -0.7
COL9A3-209ENST00000469852 TRBV7-9A0A0J9YWB2 115 aa10.69□□□□□ -0.7
COL9A3-209ENST00000469852 ZNF324O75467 553 aaPredicted RBP10.69□□□□□ -0.7
COL9A3-209ENST00000469852 ZNF80P51504 273 aaPredicted RBP10.69□□□□□ -0.7
COL9A3-209ENST00000469852 FMC1Q96HJ9 113 aa10.69□□□□□ -0.7
COL9A3-209ENST00000469852 TXNDC17Q9BRA2 123 aa10.69□□□□□ -0.7
COL9A3-209ENST00000469852 TREM1Q9NP99 234 aa10.69□□□□□ -0.7
COL9A3-209ENST00000469852 UBE2G1P62253 170 aa10.68□□□□□ -0.7
COL9A3-209ENST00000469852 SRSF3P84103 164 aaKnown RBP10.68□□□□□ -0.7
COL9A3-209ENST00000469852 TMEM183BQ1AE95 376 aa10.68□□□□□ -0.7
COL9A3-209ENST00000469852 GOLT1BQ9Y3E0 138 aa10.68□□□□□ -0.7
COL9A3-209ENST00000469852 TRBV6-1A0A0K0K1D8 114 aa10.67□□□□□ -0.7
COL9A3-209ENST00000469852 ZNF705GA8MUZ8 300 aaPredicted RBP10.67□□□□□ -0.7
COL9A3-209ENST00000469852 DEFB4AO15263 64 aa10.67□□□□□ -0.7
COL9A3-209ENST00000469852 PDE6DO43924 150 aa10.67□□□□□ -0.7
COL9A3-209ENST00000469852 LTAP01374 205 aa10.67□□□□□ -0.7
COL9A3-209ENST00000469852 TAGLN2P37802 199 aaKnown RBP10.67□□□□□ -0.7
COL9A3-209ENST00000469852 RPL35P42766 123 aaKnown RBP10.67□□□□□ -0.7
COL9A3-209ENST00000469852 CLLU1Q5K131 121 aa10.67□□□□□ -0.7
COL9A3-209ENST00000469852 Q8NAQ8 132 aa10.67□□□□□ -0.7
COL9A3-209ENST00000469852 NHLRC2Q8NBF2 726 aa10.67□□□□□ -0.7
COL9A3-209ENST00000469852 TMEM208Q9BTX3 173 aa10.67□□□□□ -0.7
COL9A3-209ENST00000469852 EIF5A2Q9GZV4 153 aaKnown RBP10.67□□□□□ -0.7
COL9A3-209ENST00000469852 MED9Q9NWA0 146 aa10.67□□□□□ -0.7
COL9A3-209ENST00000469852 U3KQK5 164 aa10.67□□□□□ -0.7
COL9A3-209ENST00000469852 IGHV4-28A0A0C4DH34 117 aa10.66□□□□□ -0.7
COL9A3-209ENST00000469852 RAB19A4D1S5 217 aa10.66□□□□□ -0.7
COL9A3-209ENST00000469852 FBLL1A6NHQ2 334 aaKnown RBP10.66□□□□□ -0.7
COL9A3-209ENST00000469852 C9JQL5 133 aa10.66□□□□□ -0.7
COL9A3-209ENST00000469852 AZU1P20160 251 aa10.66□□□□□ -0.7
COL9A3-209ENST00000469852 RAB14P61106 215 aa10.66□□□□□ -0.7
COL9A3-209ENST00000469852 Q6AWC8 147 aa10.66□□□□□ -0.7
COL9A3-209ENST00000469852 ZC2HC1AQ96GY0 325 aa10.66□□□□□ -0.7
COL9A3-209ENST00000469852 LINC01587Q99440 93 aa10.66□□□□□ -0.7
COL9A3-209ENST00000469852 NDFIP1Q9BT67 221 aa10.66□□□□□ -0.7
COL9A3-209ENST00000469852 RYR3Q15413 4870 aa10.66□□□□□ -0.7
COL9A3-209ENST00000469852 TRBV20OR9-2A0A075B6H5 130 aa10.65□□□□□ -0.7
COL9A3-209ENST00000469852 GCGP01275 180 aa10.65□□□□□ -0.7
COL9A3-209ENST00000469852 SRP19P09132 144 aaKnown RBP10.65□□□□□ -0.7
COL9A3-209ENST00000469852 HTN1P15515 57 aa10.65□□□□□ -0.7
COL9A3-209ENST00000469852 SAPCD1Q5SSQ6 148 aa10.65□□□□□ -0.7
COL9A3-209ENST00000469852 NEU1Q99519 415 aa10.65□□□□□ -0.7
COL9A3-209ENST00000469852 C20orf144Q9BQM9 153 aa10.65□□□□□ -0.7
COL9A3-209ENST00000469852 NIPSNAP3BQ9BS92 247 aa10.65□□□□□ -0.7
COL9A3-209ENST00000469852 C11orf21Q9P2W6 132 aa10.65□□□□□ -0.7
COL9A3-209ENST00000469852 DNAH7Q8WXX0 4024 aa10.65□□□□□ -0.7
COL9A3-209ENST00000469852 A0A0J9YWU9 116 aa10.64□□□□□ -0.71
COL9A3-209ENST00000469852 PGPEP1LA6NFU8 196 aa10.64□□□□□ -0.71
COL9A3-209ENST00000469852 H7BYZ3 331 aa10.64□□□□□ -0.71
COL9A3-209ENST00000469852 RGS13O14921 159 aa10.64□□□□□ -0.71
COL9A3-209ENST00000469852 IGLV2-8P01709 118 aa10.64□□□□□ -0.71
COL9A3-209ENST00000469852 CRIP1P50238 77 aa10.64□□□□□ -0.71
COL9A3-209ENST00000469852 SMUG1Q53HV7 270 aa10.64□□□□□ -0.71
COL9A3-209ENST00000469852 CENPWQ5EE01 88 aa10.64□□□□□ -0.71
COL9A3-209ENST00000469852 MUC21Q5SSG8 566 aa10.64□□□□□ -0.71
COL9A3-209ENST00000469852 TMEM256Q8N2U0 113 aa10.64□□□□□ -0.71
COL9A3-209ENST00000469852 TP53TG3Q9ULZ0 132 aa10.64□□□□□ -0.71
COL9A3-209ENST00000469852 ZFP30Q9Y2G7 519 aa10.64□□□□□ -0.71
COL9A3-209ENST00000469852 TMEM250H0YL14 139 aa10.63□□□□□ -0.71
COL9A3-209ENST00000469852 S100A9P06702 114 aaKnown RBP10.63□□□□□ -0.71
COL9A3-209ENST00000469852 MIFP14174 115 aa10.63□□□□□ -0.71
COL9A3-209ENST00000469852 CEBPGP53567 150 aa10.63□□□□□ -0.71
COL9A3-209ENST00000469852 TAS2R60P59551 318 aa10.63□□□□□ -0.71
COL9A3-209ENST00000469852 COX8CQ7Z4L0 72 aa10.63□□□□□ -0.71
COL9A3-209ENST00000469852 BAGE2Q86Y30 109 aa10.63□□□□□ -0.71
COL9A3-209ENST00000469852 MLST8Q9BVC4 326 aa10.63□□□□□ -0.71
COL9A3-209ENST00000469852 PARLQ9H300 379 aa10.63□□□□□ -0.71
COL9A3-209ENST00000469852 EDA2RQ9HAV5 297 aa10.63□□□□□ -0.71
COL9A3-209ENST00000469852 PLAC8L1A1L4L8 177 aa10.62□□□□□ -0.71
COL9A3-209ENST00000469852 RRN3P1Q2M238 152 aa10.62□□□□□ -0.71
COL9A3-209ENST00000469852 ZNF674Q2M3X9 581 aa10.62□□□□□ -0.71
COL9A3-209ENST00000469852 TMEM183AQ8IXX5 376 aa10.62□□□□□ -0.71
COL9A3-209ENST00000469852 PYGO2Q9BRQ0 406 aa10.62□□□□□ -0.71
COL9A3-209ENST00000469852 IGHV1OR15-1A0A075B7D0 117 aa10.61□□□□□ -0.71
COL9A3-209ENST00000469852 TRAV21A0A0B4J279 112 aa10.61□□□□□ -0.71
COL9A3-209ENST00000469852 SMIM9A6NGZ8 99 aa10.61□□□□□ -0.71
COL9A3-209ENST00000469852 PFN1P07737 140 aaKnown RBP10.61□□□□□ -0.71
COL9A3-209ENST00000469852 ANXA2RQ3ZCQ2 193 aa10.61□□□□□ -0.71
COL9A3-209ENST00000469852 RNASE8Q8TDE3 154 aaKnown RBP10.61□□□□□ -0.71
COL9A3-209ENST00000469852 LINC00467Q9BRT7 94 aa10.61□□□□□ -0.71
COL9A3-209ENST00000469852 C11orf68Q9H3H3 251 aaKnown RBP10.61□□□□□ -0.71
COL9A3-209ENST00000469852 NAGKQ9UJ70 344 aa10.61□□□□□ -0.71
COL9A3-209ENST00000469852 SH2D1AO60880 128 aa10.6□□□□□ -0.71
COL9A3-209ENST00000469852 NDUFS6O75380 124 aaKnown RBP10.6□□□□□ -0.71
COL9A3-209ENST00000469852 GNG4P50150 75 aa10.6□□□□□ -0.71
COL9A3-209ENST00000469852 EMP1P54849 157 aa10.6□□□□□ -0.71
COL9A3-209ENST00000469852 EIF4E3Q8N5X7 224 aaKnown RBP10.6□□□□□ -0.71
COL9A3-209ENST00000469852 CELA1Q9UNI1 258 aa10.6□□□□□ -0.71
COL9A3-209ENST00000469852 CBY3A6NI87 242 aa10.59□□□□□ -0.71
COL9A3-209ENST00000469852 GNRH2O43555 120 aa10.59□□□□□ -0.71
COL9A3-209ENST00000469852 PEA15Q15121 130 aa10.59□□□□□ -0.71
COL9A3-209ENST00000469852 PRR27Q6MZM9 219 aa10.59□□□□□ -0.71
COL9A3-209ENST00000469852 C11orf72Q8NBR9 251 aa10.59□□□□□ -0.71
COL9A3-209ENST00000469852 TMEM263Q8WUH6 116 aaKnown RBP10.59□□□□□ -0.71
COL9A3-209ENST00000469852 IGKV3D-20A0A0C4DH25 116 aa10.58□□□□□ -0.72
COL9A3-209ENST00000469852 FABP5P3A8MUU1 101 aa10.58□□□□□ -0.72
COL9A3-209ENST00000469852 C9JCJ5 164 aa10.58□□□□□ -0.72
COL9A3-209ENST00000469852 K7EN84 100 aa10.58□□□□□ -0.72
COL9A3-209ENST00000469852 TDRG1Q3Y452 100 aa10.58□□□□□ -0.72
COL9A3-209ENST00000469852 FAM159AQ6UWV7 190 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms