RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 ORMDL3Q8N138 153 aa14.62□□□□□ -0.07
VIM-203ENST00000469543 GATD1Q8NB37 220 aa14.62□□□□□ -0.07
VIM-203ENST00000469543 TRBV7-1A0A0A6YYK4 115 aa14.62□□□□□ -0.07
VIM-203ENST00000469543 BMI1P35226 326 aa14.62□□□□□ -0.07
VIM-203ENST00000469543 C10orf105Q8TEF2 133 aa14.62□□□□□ -0.07
VIM-203ENST00000469543 EVI2AP22794 236 aa14.61□□□□□ -0.07
VIM-203ENST00000469543 MAPK1IP1LQ8NDC0 245 aa14.61□□□□□ -0.07
VIM-203ENST00000469543 C20orf173Q96LM9 149 aa14.61□□□□□ -0.07
VIM-203ENST00000469543 PIMREGQ9BSJ6 248 aa14.61□□□□□ -0.07
VIM-203ENST00000469543 EDN2P20800 178 aa14.6□□□□□ -0.07
VIM-203ENST00000469543 COL5A1-AS1Q5SY13 56 aa14.6□□□□□ -0.07
VIM-203ENST00000469543 A0A1B0GW15 77 aa14.6□□□□□ -0.07
VIM-203ENST00000469543 ARL3P36405 182 aa14.6□□□□□ -0.07
VIM-203ENST00000469543 TMEM95Q3KNT9 176 aa14.59□□□□□ -0.07
VIM-203ENST00000469543 C19orf54Q5BKX5 351 aa14.59□□□□□ -0.07
VIM-203ENST00000469543 ERASQ7Z444 233 aa14.59□□□□□ -0.07
VIM-203ENST00000469543 RNF185Q96GF1 192 aa14.59□□□□□ -0.07
VIM-203ENST00000469543 MYO9AB2RTY4 2548 aa14.59□□□□□ -0.07
VIM-203ENST00000469543 A0A087X0K7 114 aa14.59□□□□□ -0.07
VIM-203ENST00000469543 OR10AG1Q8NH19 301 aa14.59□□□□□ -0.07
VIM-203ENST00000469543 HSPB8Q9UJY1 196 aa14.59□□□□□ -0.07
VIM-203ENST00000469543 U3KQK5 164 aa14.59□□□□□ -0.07
VIM-203ENST00000469543 PRB1P04280 392 aa14.59□□□□□ -0.07
VIM-203ENST00000469543 RPL11P62913 178 aaKnown RBP14.59□□□□□ -0.07
VIM-203ENST00000469543 KLK9Q2XQG4 91 aa14.59□□□□□ -0.07
VIM-203ENST00000469543 PRR9Q5T870 116 aa14.59□□□□□ -0.07
VIM-203ENST00000469543 C16orf92Q96LL3 132 aa14.59□□□□□ -0.07
VIM-203ENST00000469543 KLK9Q9UKQ9 250 aa14.59□□□□□ -0.07
VIM-203ENST00000469543 SRD5A1P18405 259 aa14.58□□□□□ -0.08
VIM-203ENST00000469543 MPV17L2Q567V2 206 aa14.58□□□□□ -0.08
VIM-203ENST00000469543 TMEM191AQ9H0A3 160 aa14.58□□□□□ -0.08
VIM-203ENST00000469543 DLEU1O43261 78 aa14.58□□□□□ -0.08
VIM-203ENST00000469543 NAV2Q8IVL1 2488 aa14.58□□□□□ -0.08
VIM-203ENST00000469543 TRAV26-2A0A0B4J265 109 aa14.57□□□□□ -0.08
VIM-203ENST00000469543 F6UB75 175 aa14.57□□□□□ -0.08
VIM-203ENST00000469543 PF4V1P10720 104 aa14.57□□□□□ -0.08
VIM-203ENST00000469543 KIR3DS1Q14943 382 aa14.57□□□□□ -0.08
VIM-203ENST00000469543 CLEC2AQ6UVW9 174 aa14.57□□□□□ -0.08
VIM-203ENST00000469543 GPHB5Q86YW7 130 aa14.57□□□□□ -0.08
VIM-203ENST00000469543 C18orf15Q96N68 181 aa14.57□□□□□ -0.08
VIM-203ENST00000469543 HIF1ANQ9NWT6 349 aa14.57□□□□□ -0.08
VIM-203ENST00000469543 U3KQE9 123 aa14.57□□□□□ -0.08
VIM-203ENST00000469543 NBPF19A0A087WUL8 3843 aa14.57□□□□□ -0.08
VIM-203ENST00000469543 TMEM78Q5T7P6 136 aa14.57□□□□□ -0.08
VIM-203ENST00000469543 PET117Q6UWS5 81 aa14.57□□□□□ -0.08
VIM-203ENST00000469543 GLMPQ8WWB7 406 aa14.57□□□□□ -0.08
VIM-203ENST00000469543 MRPS16Q9Y3D3 137 aaKnown RBP14.57□□□□□ -0.08
VIM-203ENST00000469543 C20orf202A1L168 122 aa14.56□□□□□ -0.08
VIM-203ENST00000469543 LINC01545Q5VT33 79 aa14.56□□□□□ -0.08
VIM-203ENST00000469543 MRPL52Q86TS9 123 aaKnown RBP14.56□□□□□ -0.08
VIM-203ENST00000469543 SLC50A1Q9BRV3 221 aa14.56□□□□□ -0.08
VIM-203ENST00000469543 RAB9AP51151 201 aa14.56□□□□□ -0.08
VIM-203ENST00000469543 MEGF9Q9H1U4 602 aa14.56□□□□□ -0.08
VIM-203ENST00000469543 C10orf99Q6UWK7 81 aa14.55□□□□□ -0.08
VIM-203ENST00000469543 ARL6IP6Q8N6S5 226 aa14.55□□□□□ -0.08
VIM-203ENST00000469543 TMEM190Q8WZ59 177 aa14.55□□□□□ -0.08
VIM-203ENST00000469543 NF1P21359 2839 aa14.54□□□□□ -0.08
VIM-203ENST00000469543 ZNF124Q15973 351 aa14.54□□□□□ -0.08
VIM-203ENST00000469543 LINC01559Q495D7 138 aa14.54□□□□□ -0.08
VIM-203ENST00000469543 TM4SF20Q53R12 229 aa14.54□□□□□ -0.08
VIM-203ENST00000469543 MSMBP08118 114 aa14.54□□□□□ -0.08
VIM-203ENST00000469543 HSBP1L1C9JCN9 74 aa14.53□□□□□ -0.08
VIM-203ENST00000469543 NUDT3O95989 172 aa14.53□□□□□ -0.08
VIM-203ENST00000469543 RPS20P60866 119 aaKnown RBP14.53□□□□□ -0.08
VIM-203ENST00000469543 CACNG7P62955 275 aa14.53□□□□□ -0.08
VIM-203ENST00000469543 ZNF738Q8NE65 137 aa14.53□□□□□ -0.08
VIM-203ENST00000469543 WFDC12Q8WWY7 111 aa14.53□□□□□ -0.08
VIM-203ENST00000469543 ST20Q9HBF5 79 aa14.53□□□□□ -0.08
VIM-203ENST00000469543 SCRT2Q9NQ03 307 aa14.53□□□□□ -0.08
VIM-203ENST00000469543 GOLT1BQ9Y3E0 138 aa14.53□□□□□ -0.08
VIM-203ENST00000469543 SONP18583 2426 aaKnown RBP14.52□□□□□ -0.08
VIM-203ENST00000469543 IGHV7-4-1A0A0J9YVY3 117 aa14.52□□□□□ -0.08
VIM-203ENST00000469543 RBAKDNA6NC62 111 aa14.52□□□□□ -0.08
VIM-203ENST00000469543 S100A7P31151 101 aa14.52□□□□□ -0.08
VIM-203ENST00000469543 OR4X2Q8NGF9 303 aa14.52□□□□□ -0.08
VIM-203ENST00000469543 SPOCK3Q9BQ16 436 aa14.52□□□□□ -0.08
VIM-203ENST00000469543 FBLL1A6NHQ2 334 aaKnown RBP14.52□□□□□ -0.09
VIM-203ENST00000469543 FAM223BA6NKX1 122 aa14.52□□□□□ -0.09
VIM-203ENST00000469543 IGHG2P01859 326 aa14.52□□□□□ -0.09
VIM-203ENST00000469543 SLC25A34Q6PIV7 304 aa14.52□□□□□ -0.09
VIM-203ENST00000469543 FAM223AQ8IWN6 122 aa14.52□□□□□ -0.09
VIM-203ENST00000469543 TCF21O43680 179 aa14.51□□□□□ -0.09
VIM-203ENST00000469543 TNFRSF6BO95407 300 aa14.51□□□□□ -0.09
VIM-203ENST00000469543 ANKRD39Q53RE8 183 aa14.51□□□□□ -0.09
VIM-203ENST00000469543 CNFNQ9BYD5 112 aa14.51□□□□□ -0.09
VIM-203ENST00000469543 UFC1Q9Y3C8 167 aa14.51□□□□□ -0.09
VIM-203ENST00000469543 A6NDX4 124 aa14.51□□□□□ -0.09
VIM-203ENST00000469543 SETD2Q9BYW2 2564 aaPredicted RBP14.51□□□□□ -0.09
VIM-203ENST00000469543 H3BVH4 76 aa14.5□□□□□ -0.09
VIM-203ENST00000469543 DMRTA1Q5VZB9 504 aa14.5□□□□□ -0.09
VIM-203ENST00000469543 C9orf47Q6ZRZ4 202 aa14.5□□□□□ -0.09
VIM-203ENST00000469543 DKK2Q9UBU2 259 aa14.5□□□□□ -0.09
VIM-203ENST00000469543 HBDP02042 147 aa14.49□□□□□ -0.09
VIM-203ENST00000469543 LEPP41159 167 aa14.49□□□□□ -0.09
VIM-203ENST00000469543 IGHV4-59P01825 116 aa14.48□□□□□ -0.09
VIM-203ENST00000469543 UBR5O95071 2799 aaPredicted RBP14.48□□□□□ -0.09
VIM-203ENST00000469543 IFI27L1Q96BM0 104 aa14.48□□□□□ -0.09
VIM-203ENST00000469543 AGRNO00468 2067 aa14.47□□□□□ -0.09
VIM-203ENST00000469543 A1L4Q6 167 aa14.47□□□□□ -0.09
VIM-203ENST00000469543 HIST1H1AQ02539 215 aaPredicted RBP14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms