RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 TRAV12-2A0A075B6T6 113 aa11.04□□□□□ -0.64
NPHP4-205ENST00000466897 RAB19A4D1S5 217 aa11.04□□□□□ -0.64
NPHP4-205ENST00000466897 SPRY2O43597 315 aa11.04□□□□□ -0.64
NPHP4-205ENST00000466897 RPL35P42766 123 aaKnown RBP11.04□□□□□ -0.64
NPHP4-205ENST00000466897 PEA15Q15121 130 aa11.04□□□□□ -0.64
NPHP4-205ENST00000466897 Q6AWC8 147 aa11.04□□□□□ -0.64
NPHP4-205ENST00000466897 C1orf158Q8N1D5 194 aa11.04□□□□□ -0.64
NPHP4-205ENST00000466897 SGK494Q96LW2 274 aa11.04□□□□□ -0.64
NPHP4-205ENST00000466897 NEU1Q99519 415 aa11.04□□□□□ -0.64
NPHP4-205ENST00000466897 ASCL2Q99929 193 aa11.04□□□□□ -0.64
NPHP4-205ENST00000466897 ZNF324O75467 553 aaPredicted RBP11.03□□□□□ -0.64
NPHP4-205ENST00000466897 KIR3DS1Q14943 382 aa11.03□□□□□ -0.64
NPHP4-205ENST00000466897 SMUG1Q53HV7 270 aa11.03□□□□□ -0.64
NPHP4-205ENST00000466897 PRR9Q5T870 116 aa11.03□□□□□ -0.64
NPHP4-205ENST00000466897 TMEM183AQ8IXX5 376 aa11.03□□□□□ -0.64
NPHP4-205ENST00000466897 DNAH9Q9NYC9 4486 aa11.02□□□□□ -0.65
NPHP4-205ENST00000466897 SMIM9A6NGZ8 99 aa11.02□□□□□ -0.65
NPHP4-205ENST00000466897 H7BYZ3 331 aa11.02□□□□□ -0.65
NPHP4-205ENST00000466897 SRP19P09132 144 aaKnown RBP11.02□□□□□ -0.65
NPHP4-205ENST00000466897 RBMY1A1P0DJD3 496 aaKnown RBP11.02□□□□□ -0.65
NPHP4-205ENST00000466897 RBMY1CP0DJD4 496 aa11.02□□□□□ -0.65
NPHP4-205ENST00000466897 BTN1A1Q13410 526 aa11.02□□□□□ -0.65
NPHP4-205ENST00000466897 RBMY1FQ15415 496 aaKnown RBP11.02□□□□□ -0.65
NPHP4-205ENST00000466897 LINC00467Q9BRT7 94 aa11.02□□□□□ -0.65
NPHP4-205ENST00000466897 NIPSNAP3BQ9BS92 247 aa11.02□□□□□ -0.65
NPHP4-205ENST00000466897 DERL1Q9BUN8 251 aa11.02□□□□□ -0.65
NPHP4-205ENST00000466897 MLST8Q9BVC4 326 aa11.02□□□□□ -0.65
NPHP4-205ENST00000466897 COL7A1Q02388 2944 aa11.02□□□□□ -0.65
NPHP4-205ENST00000466897 TRAV21A0A0B4J279 112 aa11.01□□□□□ -0.65
NPHP4-205ENST00000466897 C9JCJ5 164 aa11.01□□□□□ -0.65
NPHP4-205ENST00000466897 RNASE4P34096 147 aaKnown RBP11.01□□□□□ -0.65
NPHP4-205ENST00000466897 BAGE2Q86Y30 109 aa11.01□□□□□ -0.65
NPHP4-205ENST00000466897 OR11H2Q8NH07 326 aa11.01□□□□□ -0.65
NPHP4-205ENST00000466897 C8orf49Q96NF6 230 aa11.01□□□□□ -0.65
NPHP4-205ENST00000466897 PYGO2Q9BRQ0 406 aa11.01□□□□□ -0.65
NPHP4-205ENST00000466897 PARLQ9H300 379 aa11.01□□□□□ -0.65
NPHP4-205ENST00000466897 X6R8D5 127 aa11.01□□□□□ -0.65
NPHP4-205ENST00000466897 TRAV12-3A0A0B4J271 114 aa11□□□□□ -0.65
NPHP4-205ENST00000466897 J3KRW8 73 aa11□□□□□ -0.65
NPHP4-205ENST00000466897 PFN1P07737 140 aaKnown RBP11□□□□□ -0.65
NPHP4-205ENST00000466897 MIFP14174 115 aa11□□□□□ -0.65
NPHP4-205ENST00000466897 CENPWQ5EE01 88 aa11□□□□□ -0.65
NPHP4-205ENST00000466897 TMEM208Q9BTX3 173 aa11□□□□□ -0.65
NPHP4-205ENST00000466897 RETNQ9HD89 108 aa11□□□□□ -0.65
NPHP4-205ENST00000466897 NBEAL2Q6ZNJ1 2754 aa10.99□□□□□ -0.65
NPHP4-205ENST00000466897 TRBV20OR9-2A0A075B6H5 130 aa10.99□□□□□ -0.65
NPHP4-205ENST00000466897 LINC00862A6NCI5 91 aa10.99□□□□□ -0.65
NPHP4-205ENST00000466897 GCGP01275 180 aa10.99□□□□□ -0.65
NPHP4-205ENST00000466897 GNG4P50150 75 aa10.99□□□□□ -0.65
NPHP4-205ENST00000466897 SRSF3P84103 164 aaKnown RBP10.99□□□□□ -0.65
NPHP4-205ENST00000466897 UQCC3Q6UW78 93 aa10.99□□□□□ -0.65
NPHP4-205ENST00000466897 EIF4E3Q8N5X7 224 aaKnown RBP10.99□□□□□ -0.65
NPHP4-205ENST00000466897 LY96Q9Y6Y9 160 aa10.99□□□□□ -0.65
NPHP4-205ENST00000466897 C9JQL5 133 aa10.98□□□□□ -0.65
NPHP4-205ENST00000466897 ZNF80P51504 273 aaPredicted RBP10.98□□□□□ -0.65
NPHP4-205ENST00000466897 ZNF674Q2M3X9 581 aa10.98□□□□□ -0.65
NPHP4-205ENST00000466897 TDRG1Q3Y452 100 aa10.98□□□□□ -0.65
NPHP4-205ENST00000466897 FAM74A3Q4VXF1 159 aa10.98□□□□□ -0.65
NPHP4-205ENST00000466897 ZC2HC1AQ96GY0 325 aa10.98□□□□□ -0.65
NPHP4-205ENST00000466897 LINC01587Q99440 93 aa10.98□□□□□ -0.65
NPHP4-205ENST00000466897 BIN3Q9NQY0 253 aa10.98□□□□□ -0.65
NPHP4-205ENST00000466897 HUWE1Q7Z6Z7 4374 aaKnown RBP10.98□□□□□ -0.65
NPHP4-205ENST00000466897 FABP5P3A8MUU1 101 aa10.97□□□□□ -0.65
NPHP4-205ENST00000466897 IGLV2-8P01709 118 aa10.97□□□□□ -0.65
NPHP4-205ENST00000466897 ANXA2RQ3ZCQ2 193 aa10.97□□□□□ -0.65
NPHP4-205ENST00000466897 FAM162BQ5T6X4 162 aa10.97□□□□□ -0.65
NPHP4-205ENST00000466897 Q8NAQ8 132 aa10.97□□□□□ -0.65
NPHP4-205ENST00000466897 C11orf68Q9H3H3 251 aaKnown RBP10.97□□□□□ -0.65
NPHP4-205ENST00000466897 TENM3Q9P273 2699 aa10.97□□□□□ -0.65
NPHP4-205ENST00000466897 IGHV3OR16-12A0A075B7B8 117 aa10.96□□□□□ -0.65
NPHP4-205ENST00000466897 IGHV1OR15-1A0A075B7D0 117 aa10.96□□□□□ -0.65
NPHP4-205ENST00000466897 CRIP1P50238 77 aa10.96□□□□□ -0.65
NPHP4-205ENST00000466897 RRN3P1Q2M238 152 aa10.96□□□□□ -0.65
NPHP4-205ENST00000466897 ZNF493Q6ZR52 646 aa10.96□□□□□ -0.65
NPHP4-205ENST00000466897 TMEM263Q8WUH6 116 aaKnown RBP10.96□□□□□ -0.65
NPHP4-205ENST00000466897 SMIM7Q9BQ49 75 aa10.96□□□□□ -0.65
NPHP4-205ENST00000466897 TMEM189A5PLL7 270 aa10.95□□□□□ -0.66
NPHP4-205ENST00000466897 ZNF727A8MUV8 499 aa10.95□□□□□ -0.66
NPHP4-205ENST00000466897 FAM159AQ6UWV7 190 aa10.95□□□□□ -0.66
NPHP4-205ENST00000466897 Q6ZQT7 251 aa10.95□□□□□ -0.66
NPHP4-205ENST00000466897 NHLRC2Q8NBF2 726 aa10.95□□□□□ -0.66
NPHP4-205ENST00000466897 RNASE8Q8TDE3 154 aaKnown RBP10.95□□□□□ -0.66
NPHP4-205ENST00000466897 C16orf74Q96GX8 76 aa10.95□□□□□ -0.66
NPHP4-205ENST00000466897 KCNS1Q96KK3 526 aa10.95□□□□□ -0.66
NPHP4-205ENST00000466897 U3KQK5 164 aa10.95□□□□□ -0.66
NPHP4-205ENST00000466897 IGHV4-28A0A0C4DH34 117 aa10.94□□□□□ -0.66
NPHP4-205ENST00000466897 ZNF705GA8MUZ8 300 aaPredicted RBP10.94□□□□□ -0.66
NPHP4-205ENST00000466897 CEBPGP53567 150 aa10.94□□□□□ -0.66
NPHP4-205ENST00000466897 SOHLH1Q5JUK2 328 aa10.94□□□□□ -0.66
NPHP4-205ENST00000466897 IBA57Q5T440 356 aaKnown RBP10.94□□□□□ -0.66
NPHP4-205ENST00000466897 COMMD7Q86VX2 200 aa10.94□□□□□ -0.66
NPHP4-205ENST00000466897 TP53TG3Q9ULZ0 132 aa10.94□□□□□ -0.66
NPHP4-205ENST00000466897 TGP01266 2768 aa10.93□□□□□ -0.66
NPHP4-205ENST00000466897 SH2D1AO60880 128 aa10.93□□□□□ -0.66
NPHP4-205ENST00000466897 LINC01559Q495D7 138 aa10.93□□□□□ -0.66
NPHP4-205ENST00000466897 OCC1Q8TAD7 63 aa10.93□□□□□ -0.66
NPHP4-205ENST00000466897 TRGV11A0A075B6L2 103 aa10.92□□□□□ -0.66
NPHP4-205ENST00000466897 PLAC8L1A1L4L8 177 aa10.92□□□□□ -0.66
NPHP4-205ENST00000466897 C19orf71A6NCJ1 209 aa10.92□□□□□ -0.66
NPHP4-205ENST00000466897 PGPEP1LA6NFU8 196 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms