RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 IGHV3OR16-13A0A075B7E8 117 aa8.81□□□□□ -1
USP54-209ENST00000464635 IGHV3-49A0A0A0MS15 119 aa8.81□□□□□ -1
USP54-209ENST00000464635 TRAV8-1A0A0A6YYK1 113 aa8.81□□□□□ -1
USP54-209ENST00000464635 TGIF2-C20orf24A0A0A6YYL0 155 aa8.81□□□□□ -1
USP54-209ENST00000464635 IGHV3-74A0A0B4J1X5 117 aa8.81□□□□□ -1
USP54-209ENST00000464635 IZUMO1RA6ND01 250 aa8.81□□□□□ -1
USP54-209ENST00000464635 FABP5P3A8MUU1 101 aa8.81□□□□□ -1
USP54-209ENST00000464635 MT-ND6P03923 174 aa8.81□□□□□ -1
USP54-209ENST00000464635 RPS10P46783 165 aaKnown RBP8.81□□□□□ -1
USP54-209ENST00000464635 FAM162BQ5T6X4 162 aa8.81□□□□□ -1
USP54-209ENST00000464635 WDR73Q6P4I2 378 aa8.81□□□□□ -1
USP54-209ENST00000464635 OR2K2Q8NGT1 345 aa8.81□□□□□ -1
USP54-209ENST00000464635 OR10J6PQ8NGY7 276 aa8.81□□□□□ -1
USP54-209ENST00000464635 FAM19A4Q96LR4 140 aa8.81□□□□□ -1
USP54-209ENST00000464635 AGPAT4-IT1Q9H0P7 198 aa8.81□□□□□ -1
USP54-209ENST00000464635 KMT2CQ8NEZ4 4911 aaKnown RBP8.8□□□□□ -1
USP54-209ENST00000464635 A0A1B0GW15 77 aa8.8□□□□□ -1
USP54-209ENST00000464635 A0A1W2PPQ1 181 aa8.8□□□□□ -1
USP54-209ENST00000464635 ZNF705FA8MVS1 300 aaPredicted RBP8.8□□□□□ -1
USP54-209ENST00000464635 CSN3P07498 182 aa8.8□□□□□ -1
USP54-209ENST00000464635 CRISP2P16562 243 aa8.8□□□□□ -1
USP54-209ENST00000464635 SLURP1P55000 103 aa8.8□□□□□ -1
USP54-209ENST00000464635 CMC4P56277 68 aaPredicted RBP8.8□□□□□ -1
USP54-209ENST00000464635 HIST1H1AQ02539 215 aaPredicted RBP8.8□□□□□ -1
USP54-209ENST00000464635 DLX4Q92988 240 aaPredicted RBP8.8□□□□□ -1
USP54-209ENST00000464635 ZC2HC1AQ96GY0 325 aa8.8□□□□□ -1
USP54-209ENST00000464635 VGLL1Q99990 258 aa8.8□□□□□ -1
USP54-209ENST00000464635 GNB1LQ9BYB4 327 aa8.8□□□□□ -1
USP54-209ENST00000464635 MS4A6AQ9H2W1 248 aa8.8□□□□□ -1
USP54-209ENST00000464635 IGKV2-40A0A087WW87 121 aaPredicted RBP8.79□□□□□ -1
USP54-209ENST00000464635 PHOX2AO14813 284 aa8.79□□□□□ -1
USP54-209ENST00000464635 IGKV2D-40P01614 121 aaPredicted RBP8.79□□□□□ -1
USP54-209ENST00000464635 CRIP1P50238 77 aa8.79□□□□□ -1
USP54-209ENST00000464635 RPL11P62913 178 aaKnown RBP8.79□□□□□ -1
USP54-209ENST00000464635 ADAMTSL5Q6ZMM2 481 aa8.79□□□□□ -1
USP54-209ENST00000464635 LINC00322Q6ZN03 302 aaPredicted RBP8.79□□□□□ -1
USP54-209ENST00000464635 ZNF738Q8NE65 137 aa8.79□□□□□ -1
USP54-209ENST00000464635 OR8A1Q8NGG7 326 aa8.79□□□□□ -1
USP54-209ENST00000464635 CLUHP3Q96NS8 147 aa8.79□□□□□ -1
USP54-209ENST00000464635 SORL1Q92673 2214 aa8.78□□□□□ -1
USP54-209ENST00000464635 A8MTW9 85 aa8.78□□□□□ -1
USP54-209ENST00000464635 PRAC2D3DTV9 90 aa8.78□□□□□ -1
USP54-209ENST00000464635 DUSP14O95147 198 aaKnown RBP8.78□□□□□ -1
USP54-209ENST00000464635 HLA-DMBP28068 263 aa8.78□□□□□ -1
USP54-209ENST00000464635 DEFB114Q30KQ6 69 aa8.78□□□□□ -1
USP54-209ENST00000464635 LINC01559Q495D7 138 aa8.78□□□□□ -1
USP54-209ENST00000464635 RBPMS2Q6ZRY4 209 aaKnown RBP8.78□□□□□ -1
USP54-209ENST00000464635 RNF182Q8N6D2 247 aa8.78□□□□□ -1
USP54-209ENST00000464635 NHLRC2Q8NBF2 726 aa8.78□□□□□ -1
USP54-209ENST00000464635 C20orf173Q96LM9 149 aa8.78□□□□□ -1
USP54-209ENST00000464635 SGK494Q96LW2 274 aa8.78□□□□□ -1
USP54-209ENST00000464635 SPAG8Q99932 426 aaPredicted RBP8.78□□□□□ -1
USP54-209ENST00000464635 FAM110AQ9BQ89 295 aa8.78□□□□□ -1
USP54-209ENST00000464635 ZMAT5Q9UDW3 170 aaKnown RBP8.78□□□□□ -1
USP54-209ENST00000464635 ZNF256Q9Y2P7 627 aaPredicted RBP8.78□□□□□ -1
USP54-209ENST00000464635 NBEAL2Q6ZNJ1 2754 aa8.78□□□□□ -1
USP54-209ENST00000464635 S100A8P05109 93 aa8.77□□□□□ -1.01
USP54-209ENST00000464635 ACTL10Q5JWF8 245 aa8.77□□□□□ -1.01
USP54-209ENST00000464635 IGFL4Q6B9Z1 124 aa8.77□□□□□ -1.01
USP54-209ENST00000464635 PRR27Q6MZM9 219 aa8.77□□□□□ -1.01
USP54-209ENST00000464635 GATD1Q8NB37 220 aa8.77□□□□□ -1.01
USP54-209ENST00000464635 NUP35Q8NFH5 326 aa8.77□□□□□ -1.01
USP54-209ENST00000464635 NEU1Q99519 415 aa8.77□□□□□ -1.01
USP54-209ENST00000464635 TENM3Q9P273 2699 aa8.77□□□□□ -1.01
USP54-209ENST00000464635 HIGD1CA8MV81 97 aa8.76□□□□□ -1.01
USP54-209ENST00000464635 HLA-DQA1P01909 254 aa8.76□□□□□ -1.01
USP54-209ENST00000464635 TRGC2P03986 189 aa8.76□□□□□ -1.01
USP54-209ENST00000464635 DNLZQ5SXM8 178 aa8.76□□□□□ -1.01
USP54-209ENST00000464635 FOXI2Q6ZQN5 318 aa8.76□□□□□ -1.01
USP54-209ENST00000464635 OR2D3Q8NGH3 330 aa8.76□□□□□ -1.01
USP54-209ENST00000464635 WWC2-AS2Q96NR7 200 aa8.76□□□□□ -1.01
USP54-209ENST00000464635 TMA7Q9Y2S6 64 aaKnown RBP8.76□□□□□ -1.01
USP54-209ENST00000464635 HUWE1Q7Z6Z7 4374 aaKnown RBP8.76□□□□□ -1.01
USP54-209ENST00000464635 TRAV21A0A0B4J279 112 aa8.75□□□□□ -1.01
USP54-209ENST00000464635 A0A0J9YX75 114 aa8.75□□□□□ -1.01
USP54-209ENST00000464635 A0A1B0GXF2 115 aa8.75□□□□□ -1.01
USP54-209ENST00000464635 TMEM189A5PLL7 270 aa8.75□□□□□ -1.01
USP54-209ENST00000464635 OR4C46A6NHA9 309 aa8.75□□□□□ -1.01
USP54-209ENST00000464635 F2Z2F3 143 aa8.75□□□□□ -1.01
USP54-209ENST00000464635 SH2D1AO60880 128 aa8.75□□□□□ -1.01
USP54-209ENST00000464635 SAP30O75446 220 aa8.75□□□□□ -1.01
USP54-209ENST00000464635 INSL3P51460 131 aa8.75□□□□□ -1.01
USP54-209ENST00000464635 COA6Q5JTJ3 125 aaKnown RBP8.75□□□□□ -1.01
USP54-209ENST00000464635 DMRTA1Q5VZB9 504 aa8.75□□□□□ -1.01
USP54-209ENST00000464635 EBLN2Q6P2I7 272 aa8.75□□□□□ -1.01
USP54-209ENST00000464635 C8orf49Q96NF6 230 aa8.75□□□□□ -1.01
USP54-209ENST00000464635 CNFNQ9BYD5 112 aa8.75□□□□□ -1.01
USP54-209ENST00000464635 TRAPPC1Q9Y5R8 145 aa8.75□□□□□ -1.01
USP54-209ENST00000464635 U3KQK5 164 aa8.75□□□□□ -1.01
USP54-209ENST00000464635 RYR3Q15413 4870 aa8.74□□□□□ -1.01
USP54-209ENST00000464635 KLLNB2CW77 178 aa8.74□□□□□ -1.01
USP54-209ENST00000464635 TSPOP30536 169 aa8.74□□□□□ -1.01
USP54-209ENST00000464635 LEPP41159 167 aa8.74□□□□□ -1.01
USP54-209ENST00000464635 ERCC8Q13216 396 aa8.74□□□□□ -1.01
USP54-209ENST00000464635 ZFAND2AQ8N6M9 145 aa8.74□□□□□ -1.01
USP54-209ENST00000464635 DYNLRB2Q8TF09 96 aa8.74□□□□□ -1.01
USP54-209ENST00000464635 GTSF1Q8WW33 167 aa8.74□□□□□ -1.01
USP54-209ENST00000464635 STAB2Q8WWQ8 2551 aa8.74□□□□□ -1.01
USP54-209ENST00000464635 A0A1B0GUT8 65 aa8.73□□□□□ -1.01
USP54-209ENST00000464635 C5orf52A6NGY3 159 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms