RNA–Protein interactions for RNA: ENST00000463478.1

HERC4-208, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 3

Gene HERC4, Length 546 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-208ENST00000463478 TRGV2A0A075B6R0 118 aa1.75□□□□□ -2.13
HERC4-208ENST00000463478 TRBV6-5A0A0K0K1A5 114 aa1.75□□□□□ -2.13
HERC4-208ENST00000463478 ZNF727A8MUV8 499 aa1.75□□□□□ -2.13
HERC4-208ENST00000463478 J3QKU1 62 aa1.75□□□□□ -2.13
HERC4-208ENST00000463478 HLA-DRB4P13762 266 aa1.75□□□□□ -2.13
HERC4-208ENST00000463478 TMEM91Q6ZNR0 172 aa1.75□□□□□ -2.13
HERC4-208ENST00000463478 MPC1Q9Y5U8 109 aa1.75□□□□□ -2.13
HERC4-208ENST00000463478 HLA-DRB4X5D2U9 266 aa1.75□□□□□ -2.13
HERC4-208ENST00000463478 FAM135BQ49AJ0 1406 aa1.74□□□□□ -2.13
HERC4-208ENST00000463478 CCDC88CQ9P219 2028 aa1.74□□□□□ -2.13
HERC4-208ENST00000463478 RFX7Q2KHR2 1363 aa1.74□□□□□ -2.13
HERC4-208ENST00000463478 IFITM5A6NNB3 132 aa1.74□□□□□ -2.13
HERC4-208ENST00000463478 MT-ND4LP03901 98 aa1.74□□□□□ -2.13
HERC4-208ENST00000463478 SLC25A5P05141 298 aaKnown RBP1.74□□□□□ -2.13
HERC4-208ENST00000463478 AKR1D1P51857 326 aa1.74□□□□□ -2.13
HERC4-208ENST00000463478 DNAJB13P59910 316 aa1.74□□□□□ -2.13
HERC4-208ENST00000463478 NCS1P62166 190 aa1.74□□□□□ -2.13
HERC4-208ENST00000463478 BLCAPP62952 87 aa1.74□□□□□ -2.13
HERC4-208ENST00000463478 SELENOWP63302 87 aa1.74□□□□□ -2.13
HERC4-208ENST00000463478 SPCS2Q15005 226 aa1.74□□□□□ -2.13
HERC4-208ENST00000463478 Q6ZRN7 208 aaPredicted RBP1.74□□□□□ -2.13
HERC4-208ENST00000463478 TEN1Q86WV5 123 aa1.74□□□□□ -2.13
HERC4-208ENST00000463478 ZC2HC1AQ96GY0 325 aa1.74□□□□□ -2.13
HERC4-208ENST00000463478 ORMDL1Q9P0S3 153 aa1.74□□□□□ -2.13
HERC4-208ENST00000463478 METTL1Q9UBP6 276 aaKnown RBP1.74□□□□□ -2.13
HERC4-208ENST00000463478 NUP98P52948 1817 aa1.74□□□□□ -2.13
HERC4-208ENST00000463478 ZANQ9Y493 2812 aa1.74□□□□□ -2.13
HERC4-208ENST00000463478 EPPK1P58107 5090 aaKnown RBP1.73□□□□□ -2.13
HERC4-208ENST00000463478 KMT2CQ8NEZ4 4911 aaKnown RBP1.73□□□□□ -2.13
HERC4-208ENST00000463478 STRCQ7RTU9 1775 aa1.73□□□□□ -2.13
HERC4-208ENST00000463478 ZNF736B4DX44 427 aaPredicted RBP1.73□□□□□ -2.13
HERC4-208ENST00000463478 TCRAP04437 139 aa1.73□□□□□ -2.13
HERC4-208ENST00000463478 RNASE3P12724 160 aaKnown RBP1.73□□□□□ -2.13
HERC4-208ENST00000463478 COX7CP15954 63 aa1.73□□□□□ -2.13
HERC4-208ENST00000463478 KRTAP13-4Q3LI77 160 aa1.73□□□□□ -2.13
HERC4-208ENST00000463478 GLYATL3Q5SZD4 288 aa1.73□□□□□ -2.13
HERC4-208ENST00000463478 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.73□□□□□ -2.13
HERC4-208ENST00000463478 CLECL1Q8IZS7 167 aa1.73□□□□□ -2.13
HERC4-208ENST00000463478 ATOH7Q8N100 152 aa1.73□□□□□ -2.13
HERC4-208ENST00000463478 LINC00269Q8N2A0 174 aa1.73□□□□□ -2.13
HERC4-208ENST00000463478 CLEC2BQ92478 149 aa1.73□□□□□ -2.13
HERC4-208ENST00000463478 NAA38Q9BRA0 125 aaKnown RBP1.73□□□□□ -2.13
HERC4-208ENST00000463478 SAR1AQ9NR31 198 aa1.73□□□□□ -2.13
HERC4-208ENST00000463478 KLK9Q9UKQ9 250 aa1.73□□□□□ -2.13
HERC4-208ENST00000463478 SNURFQ9Y675 71 aa1.73□□□□□ -2.13
HERC4-208ENST00000463478 TAF1LQ8IZX4 1826 aa1.73□□□□□ -2.13
HERC4-208ENST00000463478 KDM5CP41229 1560 aa1.72□□□□□ -2.13
HERC4-208ENST00000463478 HYDINQ4G0P3 5121 aa1.72□□□□□ -2.13
HERC4-208ENST00000463478 DCHS1Q96JQ0 3298 aa1.72□□□□□ -2.13
HERC4-208ENST00000463478 B4DSR2 109 aa1.72□□□□□ -2.13
HERC4-208ENST00000463478 M0R2N4 97 aa1.72□□□□□ -2.13
HERC4-208ENST00000463478 CCL16O15467 120 aa1.72□□□□□ -2.13
HERC4-208ENST00000463478 IGHV3-33P01772 117 aa1.72□□□□□ -2.13
HERC4-208ENST00000463478 SLC25A4P12235 298 aa1.72□□□□□ -2.13
HERC4-208ENST00000463478 DIAPH2-AS1Q14236 149 aa1.72□□□□□ -2.13
HERC4-208ENST00000463478 PCOTHQ58A44 107 aa1.72□□□□□ -2.13
HERC4-208ENST00000463478 FAM74A1Q5RGS3 127 aa1.72□□□□□ -2.13
HERC4-208ENST00000463478 CTAGE3PQ8IX95 158 aa1.72□□□□□ -2.13
HERC4-208ENST00000463478 PATE1Q8WXA2 126 aa1.72□□□□□ -2.13
HERC4-208ENST00000463478 CIB3Q96Q77 187 aaPredicted RBP1.72□□□□□ -2.13
HERC4-208ENST00000463478 NABP2Q9BQ15 211 aa1.72□□□□□ -2.13
HERC4-208ENST00000463478 SMIM3Q9BZL3 60 aa1.72□□□□□ -2.13
HERC4-208ENST00000463478 BANF2Q9H503 90 aa1.72□□□□□ -2.13
HERC4-208ENST00000463478 VWDEQ8N2E2 1590 aa1.72□□□□□ -2.13
HERC4-208ENST00000463478 ICE1Q9Y2F5 2266 aa1.71□□□□□ -2.13
HERC4-208ENST00000463478 TENM2Q9NT68 2774 aa1.71□□□□□ -2.14
HERC4-208ENST00000463478 PLXNA3P51805 1871 aa1.71□□□□□ -2.14
HERC4-208ENST00000463478 CCDC171Q6TFL3 1326 aa1.71□□□□□ -2.14
HERC4-208ENST00000463478 CELSR1Q9NYQ6 3014 aa1.71□□□□□ -2.14
HERC4-208ENST00000463478 RIF1Q5UIP0 2472 aaKnown RBP1.71□□□□□ -2.14
HERC4-208ENST00000463478 NUPR1O60356 82 aa1.71□□□□□ -2.14
HERC4-208ENST00000463478 RBP4P02753 201 aa1.71□□□□□ -2.14
HERC4-208ENST00000463478 IGLC6P0CF74 106 aa1.71□□□□□ -2.14
HERC4-208ENST00000463478 CKS2P33552 79 aa1.71□□□□□ -2.14
HERC4-208ENST00000463478 RPL13AP3Q6NVV1 102 aa1.71□□□□□ -2.14
HERC4-208ENST00000463478 C10orf111Q8N326 155 aa1.71□□□□□ -2.14
HERC4-208ENST00000463478 TSTD1Q8NFU3 115 aa1.71□□□□□ -2.14
HERC4-208ENST00000463478 LINC00052Q96N35 136 aa1.71□□□□□ -2.14
HERC4-208ENST00000463478 VPS25Q9BRG1 176 aa1.71□□□□□ -2.14
HERC4-208ENST00000463478 SLC35B3Q9H1N7 401 aa1.71□□□□□ -2.14
HERC4-208ENST00000463478 NIT2Q9NQR4 276 aa1.71□□□□□ -2.14
HERC4-208ENST00000463478 ERG28Q9UKR5 140 aa1.71□□□□□ -2.14
HERC4-208ENST00000463478 PRG4Q92954 1404 aaPredicted RBP1.71□□□□□ -2.14
HERC4-208ENST00000463478 NCOA3Q9Y6Q9 1424 aa1.71□□□□□ -2.14
HERC4-208ENST00000463478 NBEAQ8NFP9 2946 aa1.71□□□□□ -2.14
HERC4-208ENST00000463478 NUP210Q8TEM1 1887 aaPredicted RBP1.71□□□□□ -2.14
HERC4-208ENST00000463478 TLN2Q9Y4G6 2542 aa1.71□□□□□ -2.14
HERC4-208ENST00000463478 EML6Q6ZMW3 1958 aa1.7□□□□□ -2.14
HERC4-208ENST00000463478 UHRF1BP1LA0JNW5 1464 aa1.7□□□□□ -2.14
HERC4-208ENST00000463478 WDR7Q9Y4E6 1490 aa1.7□□□□□ -2.14
HERC4-208ENST00000463478 TOP2BQ02880 1626 aa1.7□□□□□ -2.14
HERC4-208ENST00000463478 LAMA3Q16787 3333 aa1.7□□□□□ -2.14
HERC4-208ENST00000463478 MYH7BA7E2Y1 1941 aa1.7□□□□□ -2.14
HERC4-208ENST00000463478 MDC1Q14676 2089 aaKnown RBP1.7□□□□□ -2.14
HERC4-208ENST00000463478 RYR2Q92736 4967 aa1.7□□□□□ -2.14
HERC4-208ENST00000463478 TRBV6-8A0A0A6YYG3 113 aa1.7□□□□□ -2.14
HERC4-208ENST00000463478 CCDC160A6NGH7 325 aa1.7□□□□□ -2.14
HERC4-208ENST00000463478 INE1O15225 51 aa1.7□□□□□ -2.14
HERC4-208ENST00000463478 IL9P15248 144 aa1.7□□□□□ -2.14
HERC4-208ENST00000463478 KDELR1P24390 212 aa1.7□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms