RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 PMS2P5A8MQ11 134 aa4.95□□□□□ -1.62
VPS13D-202ENST00000460333 SHANK2-AS3Q9BTD1 123 aa4.95□□□□□ -1.62
VPS13D-202ENST00000460333 PRORYQ9H606 182 aa4.95□□□□□ -1.62
VPS13D-202ENST00000460333 FXYD7P58549 80 aa4.94□□□□□ -1.62
VPS13D-202ENST00000460333 IGF2BP2-AS1Q96M15 143 aa4.94□□□□□ -1.62
VPS13D-202ENST00000460333 CACNA1DQ01668 2161 aa4.94□□□□□ -1.62
VPS13D-202ENST00000460333 TRAV12-3A0A0B4J271 114 aa4.94□□□□□ -1.62
VPS13D-202ENST00000460333 FAM106AQ4KMX7 169 aa4.94□□□□□ -1.62
VPS13D-202ENST00000460333 SH2D6Q7Z4S9 175 aa4.94□□□□□ -1.62
VPS13D-202ENST00000460333 ANKRD29Q8N6D5 301 aa4.94□□□□□ -1.62
VPS13D-202ENST00000460333 DPM3Q9P2X0 92 aa4.94□□□□□ -1.62
VPS13D-202ENST00000460333 KAAG1Q9UBP8 84 aa4.94□□□□□ -1.62
VPS13D-202ENST00000460333 LSM4Q9Y4Z0 139 aaKnown RBP4.94□□□□□ -1.62
VPS13D-202ENST00000460333 NAV3Q8IVL0 2385 aa4.94□□□□□ -1.62
VPS13D-202ENST00000460333 CADP27708 2225 aa4.94□□□□□ -1.62
VPS13D-202ENST00000460333 NBR2O15453 112 aa4.94□□□□□ -1.62
VPS13D-202ENST00000460333 ATP5G1P05496 136 aa4.94□□□□□ -1.62
VPS13D-202ENST00000460333 CR1LQ2VPA4 569 aa4.94□□□□□ -1.62
VPS13D-202ENST00000460333 THAP8Q8NA92 274 aa4.94□□□□□ -1.62
VPS13D-202ENST00000460333 REV3LO60673 3130 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 TRBV25-1A0A075B6N4 114 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 IGKV2-40A0A087WW87 121 aaPredicted RBP4.93□□□□□ -1.62
VPS13D-202ENST00000460333 IGKV2D-40P01614 121 aaPredicted RBP4.93□□□□□ -1.62
VPS13D-202ENST00000460333 CD28P10747 220 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 TMEM200BQ69YZ2 307 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 AMTNQ6UX39 209 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 DNAJC30Q96LL9 226 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 ZNF462Q96JM2 2506 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 CSPG4Q6UVK1 2322 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 C2orf70A6NJV1 201 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 SMKR1H3BMG3 65 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 SNRPD3P62318 126 aaKnown RBP4.93□□□□□ -1.62
VPS13D-202ENST00000460333 WFDC2Q14508 124 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 LY6EQ16553 131 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 CITED2Q99967 270 aaPredicted RBP4.93□□□□□ -1.62
VPS13D-202ENST00000460333 TMEM133Q9H2Q1 129 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 SZT2Q5T011 3432 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 TMEM213A2RRL7 107 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 FGF6P10767 208 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 FXYD5Q96DB9 178 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 Q96MF0 132 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 PRADC1Q9BSG0 188 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 MRPL35Q9NZE8 188 aaKnown RBP4.93□□□□□ -1.62
VPS13D-202ENST00000460333 CCDC168Q8NDH2 2452 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 WNK2Q9Y3S1 2297 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 TRAV8-3A0A0A6YYJ7 113 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 PRSS29PA6NIE9 313 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 CCL3L1P16619 93 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 MSMPQ1L6U9 139 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 C17orf58Q2M2W7 97 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 C1orf122Q6ZSJ8 110 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 PCP2Q8IVA1 136 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 GLMPQ8WWB7 406 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 UNC80Q8N2C7 3258 aa4.93□□□□□ -1.62
VPS13D-202ENST00000460333 MRPL23Q16540 153 aaKnown RBP4.92□□□□□ -1.62
VPS13D-202ENST00000460333 NDUFA4L2Q9NRX3 87 aa4.92□□□□□ -1.62
VPS13D-202ENST00000460333 DKK2Q9UBU2 259 aa4.92□□□□□ -1.62
VPS13D-202ENST00000460333 TRBV19A0A075B6N1 114 aa4.92□□□□□ -1.62
VPS13D-202ENST00000460333 RNASE4P34096 147 aaKnown RBP4.92□□□□□ -1.62
VPS13D-202ENST00000460333 PRR31Q5SQ13 230 aa4.92□□□□□ -1.62
VPS13D-202ENST00000460333 Q6ZPA2 131 aa4.92□□□□□ -1.62
VPS13D-202ENST00000460333 C8orf31Q8N9H6 132 aa4.92□□□□□ -1.62
VPS13D-202ENST00000460333 NTN5Q8WTR8 489 aaPredicted RBP4.92□□□□□ -1.62
VPS13D-202ENST00000460333 DDB2Q92466 427 aa4.92□□□□□ -1.62
VPS13D-202ENST00000460333 PRSS22Q9GZN4 317 aa4.92□□□□□ -1.62
VPS13D-202ENST00000460333 IGHV3OR16-10A0A075B7F0 116 aa4.92□□□□□ -1.62
VPS13D-202ENST00000460333 RNF223E7ERA6 249 aa4.92□□□□□ -1.62
VPS13D-202ENST00000460333 C5orf47Q569G3 176 aa4.92□□□□□ -1.62
VPS13D-202ENST00000460333 LINC00311Q8N616 119 aa4.92□□□□□ -1.62
VPS13D-202ENST00000460333 LINC01356Q8N9X3 169 aa4.92□□□□□ -1.62
VPS13D-202ENST00000460333 WFDC12Q8WWY7 111 aa4.92□□□□□ -1.62
VPS13D-202ENST00000460333 LINC00477Q96M19 166 aa4.92□□□□□ -1.62
VPS13D-202ENST00000460333 SHANK1Q9Y566 2161 aa4.92□□□□□ -1.62
VPS13D-202ENST00000460333 IGKV3-7A0A075B6H7 116 aa4.92□□□□□ -1.62
VPS13D-202ENST00000460333 A0A1W2PPI3 338 aa4.92□□□□□ -1.62
VPS13D-202ENST00000460333 CRPP02741 224 aa4.92□□□□□ -1.62
VPS13D-202ENST00000460333 IGHV1-8P0DP01 117 aa4.92□□□□□ -1.62
VPS13D-202ENST00000460333 PPIFP30405 207 aaKnown RBP4.92□□□□□ -1.62
VPS13D-202ENST00000460333 RASL10AQ92737 203 aa4.92□□□□□ -1.62
VPS13D-202ENST00000460333 C20orf78Q9BR46 151 aa4.92□□□□□ -1.62
VPS13D-202ENST00000460333 TIMM21Q9BVV7 248 aa4.92□□□□□ -1.62
VPS13D-202ENST00000460333 HIST1H4AP62805 103 aaKnown RBP4.91□□□□□ -1.62
VPS13D-202ENST00000460333 ADORA2A-AS1P86434 159 aa4.91□□□□□ -1.62
VPS13D-202ENST00000460333 DAZAP2Q15038 168 aaPredicted RBP4.91□□□□□ -1.62
VPS13D-202ENST00000460333 C2orf66Q6UXQ4 117 aa4.91□□□□□ -1.62
VPS13D-202ENST00000460333 C9orf139Q6ZV77 190 aa4.91□□□□□ -1.62
VPS13D-202ENST00000460333 SPATA25Q9BR10 227 aa4.91□□□□□ -1.62
VPS13D-202ENST00000460333 SPANXB1Q9NS25 103 aaPredicted RBP4.91□□□□□ -1.62
VPS13D-202ENST00000460333 MED13LQ71F56 2210 aa4.91□□□□□ -1.62
VPS13D-202ENST00000460333 KIAA2026Q5HYC2 2103 aa4.91□□□□□ -1.62
VPS13D-202ENST00000460333 TRGV11A0A075B6L2 103 aa4.91□□□□□ -1.62
VPS13D-202ENST00000460333 ATOX1O00244 68 aa4.91□□□□□ -1.62
VPS13D-202ENST00000460333 CFC1BP0CG36 223 aa4.91□□□□□ -1.62
VPS13D-202ENST00000460333 CFC1P0CG37 223 aa4.91□□□□□ -1.62
VPS13D-202ENST00000460333 GATA3P23771 443 aa4.91□□□□□ -1.62
VPS13D-202ENST00000460333 FXYD2P54710 66 aa4.91□□□□□ -1.62
VPS13D-202ENST00000460333 Q6ZUT4 128 aa4.91□□□□□ -1.62
VPS13D-202ENST00000460333 PRUNE2Q8WUY3 3088 aa4.91□□□□□ -1.62
VPS13D-202ENST00000460333 RNASE1P07998 156 aaKnown RBP4.91□□□□□ -1.62
VPS13D-202ENST00000460333 HERV-K104P63124 156 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms