RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 CKS2P33552 79 aa6.62□□□□□ -1.35
VPS50-208ENST00000458707 C8orf86Q6ZUL3 223 aa6.62□□□□□ -1.35
VPS50-208ENST00000458707 PCP2Q8IVA1 136 aa6.62□□□□□ -1.35
VPS50-208ENST00000458707 NPBQ8NG41 125 aa6.62□□□□□ -1.35
VPS50-208ENST00000458707 MSRB2Q9Y3D2 182 aa6.62□□□□□ -1.35
VPS50-208ENST00000458707 HILPDAQ9Y5L2 63 aa6.62□□□□□ -1.35
VPS50-208ENST00000458707 KALRNO60229 2985 aa6.62□□□□□ -1.35
VPS50-208ENST00000458707 RP1L1Q8IWN7 2480 aaPredicted RBP6.62□□□□□ -1.35
VPS50-208ENST00000458707 IGLV11-55A0A075B6I3 123 aa6.62□□□□□ -1.35
VPS50-208ENST00000458707 TMSB15BA0A087X1C1 80 aa6.62□□□□□ -1.35
VPS50-208ENST00000458707 E7EQL1 145 aa6.62□□□□□ -1.35
VPS50-208ENST00000458707 F8W735 103 aaPredicted RBP6.62□□□□□ -1.35
VPS50-208ENST00000458707 NBR2O15453 112 aa6.62□□□□□ -1.35
VPS50-208ENST00000458707 GFRALQ6UXV0 394 aa6.62□□□□□ -1.35
VPS50-208ENST00000458707 BCL6BQ8N143 479 aaPredicted RBP6.62□□□□□ -1.35
VPS50-208ENST00000458707 RNF185Q96GF1 192 aa6.62□□□□□ -1.35
VPS50-208ENST00000458707 DYNLRB1Q9NP97 96 aa6.62□□□□□ -1.35
VPS50-208ENST00000458707 BOD1L1Q8NFC6 3051 aa6.61□□□□□ -1.35
VPS50-208ENST00000458707 AGRNO00468 2067 aa6.61□□□□□ -1.35
VPS50-208ENST00000458707 NPIPB5A8MRT5 1133 aa6.61□□□□□ -1.35
VPS50-208ENST00000458707 SCGB2A1O75556 95 aa6.61□□□□□ -1.35
VPS50-208ENST00000458707 HLA-DRB4P13762 266 aa6.61□□□□□ -1.35
VPS50-208ENST00000458707 FCER1GP30273 86 aa6.61□□□□□ -1.35
VPS50-208ENST00000458707 FXYD7P58549 80 aa6.61□□□□□ -1.35
VPS50-208ENST00000458707 RPL24P83731 157 aaKnown RBP6.61□□□□□ -1.35
VPS50-208ENST00000458707 KRTAP1-3Q8IUG1 177 aa6.61□□□□□ -1.35
VPS50-208ENST00000458707 IGFBPL1Q8WX77 278 aa6.61□□□□□ -1.35
VPS50-208ENST00000458707 CFHR4Q92496 578 aa6.61□□□□□ -1.35
VPS50-208ENST00000458707 FANCD2OSQ96PS1 177 aa6.61□□□□□ -1.35
VPS50-208ENST00000458707 MAP1LC3AQ9H492 121 aa6.61□□□□□ -1.35
VPS50-208ENST00000458707 ONECUT1Q9UBC0 465 aa6.61□□□□□ -1.35
VPS50-208ENST00000458707 DKK2Q9UBU2 259 aa6.61□□□□□ -1.35
VPS50-208ENST00000458707 HHLA3Q9XRX5 114 aa6.61□□□□□ -1.35
VPS50-208ENST00000458707 SPCS1Q9Y6A9 102 aa6.61□□□□□ -1.35
VPS50-208ENST00000458707 HLA-DRB4X5D2U9 266 aa6.61□□□□□ -1.35
VPS50-208ENST00000458707 IGKV2-40A0A087WW87 121 aaPredicted RBP6.6□□□□□ -1.35
VPS50-208ENST00000458707 SMKR1H3BMG3 65 aa6.6□□□□□ -1.35
VPS50-208ENST00000458707 TIMM23O14925 209 aa6.6□□□□□ -1.35
VPS50-208ENST00000458707 IGKV2D-40P01614 121 aaPredicted RBP6.6□□□□□ -1.35
VPS50-208ENST00000458707 SMIM13P0DJ93 91 aa6.6□□□□□ -1.35
VPS50-208ENST00000458707 PRB4P10163 310 aaPredicted RBP6.6□□□□□ -1.35
VPS50-208ENST00000458707 RPL7P18124 248 aaKnown RBP6.6□□□□□ -1.35
VPS50-208ENST00000458707 COX7A1P24310 79 aa6.6□□□□□ -1.35
VPS50-208ENST00000458707 NMUP48645 174 aa6.6□□□□□ -1.35
VPS50-208ENST00000458707 ZNF80P51504 273 aaPredicted RBP6.6□□□□□ -1.35
VPS50-208ENST00000458707 MFAP4P55083 255 aa6.6□□□□□ -1.35
VPS50-208ENST00000458707 PRB3Q04118 309 aaPredicted RBP6.6□□□□□ -1.35
VPS50-208ENST00000458707 TWIST1Q15672 202 aa6.6□□□□□ -1.35
VPS50-208ENST00000458707 C1QTNF4Q9BXJ3 329 aa6.6□□□□□ -1.35
VPS50-208ENST00000458707 NXT2Q9NPJ8 142 aaKnown RBP6.6□□□□□ -1.35
VPS50-208ENST00000458707 SPANXB1Q9NS25 103 aaPredicted RBP6.6□□□□□ -1.35
VPS50-208ENST00000458707 ARHGAP32A7KAX9 2087 aa6.6□□□□□ -1.35
VPS50-208ENST00000458707 DMXL2Q8TDJ6 3036 aa6.6□□□□□ -1.35
VPS50-208ENST00000458707 PRRG2O14669 202 aa6.6□□□□□ -1.35
VPS50-208ENST00000458707 FABP2P12104 132 aa6.6□□□□□ -1.35
VPS50-208ENST00000458707 EVI2AP22794 236 aa6.6□□□□□ -1.35
VPS50-208ENST00000458707 LY6G5BQ8NDX9 201 aa6.6□□□□□ -1.35
VPS50-208ENST00000458707 PHLDA1Q8WV24 401 aaPredicted RBP6.6□□□□□ -1.35
VPS50-208ENST00000458707 RAB37Q96AX2 223 aa6.6□□□□□ -1.35
VPS50-208ENST00000458707 ANAPC13Q9BS18 74 aa6.6□□□□□ -1.35
VPS50-208ENST00000458707 TMEM126AQ9H061 195 aa6.6□□□□□ -1.35
VPS50-208ENST00000458707 PTPN13Q12923 2485 aa6.59□□□□□ -1.35
VPS50-208ENST00000458707 IGKV2D-26A0A0A0MRZ7 120 aa6.59□□□□□ -1.35
VPS50-208ENST00000458707 CENPVL3A0A0U1RRI6 287 aa6.59□□□□□ -1.35
VPS50-208ENST00000458707 SMIM9A6NGZ8 99 aa6.59□□□□□ -1.35
VPS50-208ENST00000458707 F8W1H4 67 aa6.59□□□□□ -1.35
VPS50-208ENST00000458707 KLF17Q5JT82 389 aaPredicted RBP6.59□□□□□ -1.35
VPS50-208ENST00000458707 SAMD5Q5TGI4 173 aa6.59□□□□□ -1.35
VPS50-208ENST00000458707 OR11H6Q8NGC7 330 aa6.59□□□□□ -1.35
VPS50-208ENST00000458707 VGLL1Q99990 258 aa6.59□□□□□ -1.35
VPS50-208ENST00000458707 NAA38Q9BRA0 125 aaKnown RBP6.59□□□□□ -1.35
VPS50-208ENST00000458707 TM2D2Q9BX73 214 aa6.59□□□□□ -1.35
VPS50-208ENST00000458707 SMAD5-AS1Q9Y6J3 95 aa6.59□□□□□ -1.35
VPS50-208ENST00000458707 IGLV2-18A0A075B6J9 118 aa6.58□□□□□ -1.36
VPS50-208ENST00000458707 GAGE12JA6NER3 117 aa6.58□□□□□ -1.36
VPS50-208ENST00000458707 GAGE7O76087 117 aa6.58□□□□□ -1.36
VPS50-208ENST00000458707 TNFRSF6BO95407 300 aa6.58□□□□□ -1.36
VPS50-208ENST00000458707 GAGE12FP0CL80 117 aa6.58□□□□□ -1.36
VPS50-208ENST00000458707 GAGE12GP0CL81 117 aa6.58□□□□□ -1.36
VPS50-208ENST00000458707 GAGE12IP0CL82 117 aa6.58□□□□□ -1.36
VPS50-208ENST00000458707 LEPP41159 167 aa6.58□□□□□ -1.36
VPS50-208ENST00000458707 FXYD2P54710 66 aa6.58□□□□□ -1.36
VPS50-208ENST00000458707 TCTAP57738 103 aa6.58□□□□□ -1.36
VPS50-208ENST00000458707 GAGE4Q13068 117 aa6.58□□□□□ -1.36
VPS50-208ENST00000458707 KLRD1Q13241 179 aa6.58□□□□□ -1.36
VPS50-208ENST00000458707 ZNF672Q499Z4 452 aaPredicted RBP6.58□□□□□ -1.36
VPS50-208ENST00000458707 TMEM78Q5T7P6 136 aa6.58□□□□□ -1.36
VPS50-208ENST00000458707 SPAG8Q99932 426 aaPredicted RBP6.58□□□□□ -1.36
VPS50-208ENST00000458707 PPDPFQ9H3Y8 114 aa6.58□□□□□ -1.36
VPS50-208ENST00000458707 C21orf62Q9NYP8 219 aa6.58□□□□□ -1.36
VPS50-208ENST00000458707 DPM3Q9P2X0 92 aa6.58□□□□□ -1.36
VPS50-208ENST00000458707 FABP5P3A8MUU1 101 aa6.58□□□□□ -1.36
VPS50-208ENST00000458707 ATP5LO75964 103 aa6.58□□□□□ -1.36
VPS50-208ENST00000458707 IGKCP01834 107 aa6.58□□□□□ -1.36
VPS50-208ENST00000458707 SPINK8P0C7L1 97 aa6.58□□□□□ -1.36
VPS50-208ENST00000458707 NHLRC4P0CG21 123 aaPredicted RBP6.58□□□□□ -1.36
VPS50-208ENST00000458707 Q8N8P6 123 aa6.58□□□□□ -1.36
VPS50-208ENST00000458707 Q8TAT8 98 aa6.58□□□□□ -1.36
VPS50-208ENST00000458707 C18orf15Q96N68 181 aa6.58□□□□□ -1.36
VPS50-208ENST00000458707 DUX5Q96PT3 197 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms