RNA–Protein interactions for RNA: ENST00000446225.5

MCF2-206, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-206ENST00000446225 ZDHHC22Q8N966 263 aa4.52□□□□□ -1.69
MCF2-206ENST00000446225 RXFP4Q8TDU9 374 aa4.52□□□□□ -1.69
MCF2-206ENST00000446225 ZNF331Q9NQX6 463 aaPredicted RBP4.52□□□□□ -1.69
MCF2-206ENST00000446225 TNFRSF19Q9NS68 423 aa4.52□□□□□ -1.69
MCF2-206ENST00000446225 IGHV3-43A0A0B4J1X8 118 aa4.52□□□□□ -1.69
MCF2-206ENST00000446225 A0A1B0GW64 132 aa4.52□□□□□ -1.69
MCF2-206ENST00000446225 KRBOX1C9JBD0 128 aa4.52□□□□□ -1.69
MCF2-206ENST00000446225 SDCBPO00560 298 aaPredicted RBP4.52□□□□□ -1.69
MCF2-206ENST00000446225 TAS2R20P59543 309 aa4.52□□□□□ -1.69
MCF2-206ENST00000446225 DEFA1P59665 94 aa4.52□□□□□ -1.69
MCF2-206ENST00000446225 TMEM267Q0VDI3 215 aaPredicted RBP4.52□□□□□ -1.69
MCF2-206ENST00000446225 CENPWQ5EE01 88 aa4.52□□□□□ -1.69
MCF2-206ENST00000446225 COL5A1-AS1Q5SY13 56 aa4.52□□□□□ -1.69
MCF2-206ENST00000446225 ZNF880Q6PDB4 577 aa4.52□□□□□ -1.69
MCF2-206ENST00000446225 TCTE3Q8IZS6 198 aa4.52□□□□□ -1.69
MCF2-206ENST00000446225 SLC25A31Q9H0C2 315 aa4.52□□□□□ -1.69
MCF2-206ENST00000446225 ABRACLQ9P1F3 81 aa4.52□□□□□ -1.69
MCF2-206ENST00000446225 FBN1P35555 2871 aaKnown RBP4.51□□□□□ -1.69
MCF2-206ENST00000446225 TRBV6-6A0A0A6YYG2 114 aa4.51□□□□□ -1.69
MCF2-206ENST00000446225 WI2-2373I1.2A0A1W2PRP0 233 aa4.51□□□□□ -1.69
MCF2-206ENST00000446225 KNCNA6PVL3 124 aa4.51□□□□□ -1.69
MCF2-206ENST00000446225 KRTAP4-16G5E9R7 235 aaPredicted RBP4.51□□□□□ -1.69
MCF2-206ENST00000446225 LY6LH3BQJ8 138 aa4.51□□□□□ -1.69
MCF2-206ENST00000446225 I3L521 148 aa4.51□□□□□ -1.69
MCF2-206ENST00000446225 CA2P00918 260 aa4.51□□□□□ -1.69
MCF2-206ENST00000446225 IGLV1-47P01700 117 aa4.51□□□□□ -1.69
MCF2-206ENST00000446225 CFC1BP0CG36 223 aa4.51□□□□□ -1.69
MCF2-206ENST00000446225 CFC1P0CG37 223 aa4.51□□□□□ -1.69
MCF2-206ENST00000446225 HIST1H1DP16402 221 aaKnown RBP4.51□□□□□ -1.69
MCF2-206ENST00000446225 TMBIM6P55061 237 aa4.51□□□□□ -1.69
MCF2-206ENST00000446225 UBA52P62987 128 aaKnown RBP4.51□□□□□ -1.69
MCF2-206ENST00000446225 DAZ2Q13117 558 aaKnown RBP4.51□□□□□ -1.69
MCF2-206ENST00000446225 RASL11AQ6T310 242 aa4.51□□□□□ -1.69
MCF2-206ENST00000446225 DAZ4Q86SG3 579 aaKnown RBP4.51□□□□□ -1.69
MCF2-206ENST00000446225 ANKRD29Q8N6D5 301 aa4.51□□□□□ -1.69
MCF2-206ENST00000446225 PRADC1Q9BSG0 188 aa4.51□□□□□ -1.69
MCF2-206ENST00000446225 ZNF471Q9BX82 626 aaPredicted RBP4.51□□□□□ -1.69
MCF2-206ENST00000446225 DAZ1Q9NQZ3 744 aaKnown RBP4.51□□□□□ -1.69
MCF2-206ENST00000446225 DAZ3Q9NR90 486 aaKnown RBP4.51□□□□□ -1.69
MCF2-206ENST00000446225 COMMD3Q9UBI1 195 aa4.51□□□□□ -1.69
MCF2-206ENST00000446225 HILPDAQ9Y5L2 63 aa4.51□□□□□ -1.69
MCF2-206ENST00000446225 DSCAML1Q8TD84 2053 aa4.51□□□□□ -1.69
MCF2-206ENST00000446225 H3BP45 60 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 BUB1B-PAK6H3BSN5 160 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 K7EPK0 472 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 UPK2O00526 184 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 CRYBA1P05813 215 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 PTHLHP12272 177 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 PPP1CCP36873 323 aaKnown RBP4.5□□□□□ -1.69
MCF2-206ENST00000446225 DIAPH2-AS1Q14236 149 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 HMGN3Q15651 99 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 KRTAP24-1Q3LI83 254 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 MINOS1Q5TGZ0 78 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 NUP35Q8NFH5 326 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 RAB2BQ8WUD1 216 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 S100A16Q96FQ6 103 aaKnown RBP4.5□□□□□ -1.69
MCF2-206ENST00000446225 SMIM8Q96KF7 97 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 HSD17B10Q99714 261 aaKnown RBP4.5□□□□□ -1.69
MCF2-206ENST00000446225 ANAPC13Q9BS18 74 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 TMEM243Q9BU79 118 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 MOB4Q9Y3A3 225 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 MINOS1-NBL1R4GNA1 71 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 IGKV1-6A0A0C4DH72 117 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 TMEM235A6NFC5 223 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 H3BUX3 64 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 HLA-DRB1P01911 266 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 ELK1P19419 428 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 RAB5CP51148 216 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 HERVK_113P61574 105 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 RHOGP84095 191 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 LY6EQ16553 131 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 UBE2NLQ5JXB2 153 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.5□□□□□ -1.69
MCF2-206ENST00000446225 PAXXQ9BUH6 204 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 PARP12Q9H0J9 701 aaKnown RBP4.5□□□□□ -1.69
MCF2-206ENST00000446225 LAMTOR3Q9UHA4 124 aa4.5□□□□□ -1.69
MCF2-206ENST00000446225 COL6A5A8TX70 2615 aa4.49□□□□□ -1.69
MCF2-206ENST00000446225 FOLR2P14207 255 aa4.49□□□□□ -1.69
MCF2-206ENST00000446225 CD24P25063 80 aa4.49□□□□□ -1.69
MCF2-206ENST00000446225 GNG4P50150 75 aa4.49□□□□□ -1.69
MCF2-206ENST00000446225 MMDQ15546 238 aa4.49□□□□□ -1.69
MCF2-206ENST00000446225 KRTAP21-3Q3LHN1 58 aa4.49□□□□□ -1.69
MCF2-206ENST00000446225 HRCT1Q6UXD1 115 aa4.49□□□□□ -1.69
MCF2-206ENST00000446225 LINC00311Q8N616 119 aa4.49□□□□□ -1.69
MCF2-206ENST00000446225 TMEM158Q8WZ71 300 aa4.49□□□□□ -1.69
MCF2-206ENST00000446225 RBMXL1Q96E39 390 aaKnown RBP4.49□□□□□ -1.69
MCF2-206ENST00000446225 SLC35E1Q96K37 410 aa4.49□□□□□ -1.69
MCF2-206ENST00000446225 SAMD10Q9BYL1 202 aa4.49□□□□□ -1.69
MCF2-206ENST00000446225 PARP11Q9NR21 331 aa4.49□□□□□ -1.69
MCF2-206ENST00000446225 OR5AC2Q9NZP5 309 aa4.49□□□□□ -1.69
MCF2-206ENST00000446225 LOC102724200A0A096LPH7 203 aaPredicted RBP4.48□□□□□ -1.69
MCF2-206ENST00000446225 PGPA6NDG6 321 aa4.48□□□□□ -1.69
MCF2-206ENST00000446225 J3QR89 54 aa4.48□□□□□ -1.69
MCF2-206ENST00000446225 YPEL1O60688 119 aa4.48□□□□□ -1.69
MCF2-206ENST00000446225 CXorf1O96002 111 aa4.48□□□□□ -1.69
MCF2-206ENST00000446225 HLA-DQB1P01920 261 aa4.48□□□□□ -1.69
MCF2-206ENST00000446225 NTF3P20783 257 aa4.48□□□□□ -1.69
MCF2-206ENST00000446225 RPL23P62829 140 aaKnown RBP4.48□□□□□ -1.69
MCF2-206ENST00000446225 Q6ZRU5 148 aa4.48□□□□□ -1.69
MCF2-206ENST00000446225 YPEL2Q96QA6 119 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms