RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 OR11H2Q8NH07 326 aa8.27□□□□□ -1.08
USP54-204ENST00000422491 RNF5Q99942 180 aa8.27□□□□□ -1.08
USP54-204ENST00000422491 H7C1H1 209 aa8.27□□□□□ -1.09
USP54-204ENST00000422491 LGALS1P09382 135 aaKnown RBP8.27□□□□□ -1.09
USP54-204ENST00000422491 GLMPQ8WWB7 406 aa8.27□□□□□ -1.09
USP54-204ENST00000422491 DMXL2Q8TDJ6 3036 aa8.27□□□□□ -1.09
USP54-204ENST00000422491 ROS1P08922 2347 aa8.27□□□□□ -1.09
USP54-204ENST00000422491 TRAV26-2A0A0B4J265 109 aa8.27□□□□□ -1.09
USP54-204ENST00000422491 IGKV3D-20A0A0C4DH25 116 aa8.27□□□□□ -1.09
USP54-204ENST00000422491 DYNAPQ8N1N2 210 aa8.27□□□□□ -1.09
USP54-204ENST00000422491 CFHR4Q92496 578 aa8.27□□□□□ -1.09
USP54-204ENST00000422491 FANCD2OSQ96PS1 177 aa8.27□□□□□ -1.09
USP54-204ENST00000422491 UBE2D1P51668 147 aa8.26□□□□□ -1.09
USP54-204ENST00000422491 ERCC8Q13216 396 aa8.26□□□□□ -1.09
USP54-204ENST00000422491 BOD1L1Q8NFC6 3051 aa8.26□□□□□ -1.09
USP54-204ENST00000422491 IGLV11-55A0A075B6I3 123 aa8.26□□□□□ -1.09
USP54-204ENST00000422491 MFAP4P55083 255 aa8.26□□□□□ -1.09
USP54-204ENST00000422491 CARD19Q96LW7 228 aa8.26□□□□□ -1.09
USP54-204ENST00000422491 C11orf21Q9P2W6 132 aa8.26□□□□□ -1.09
USP54-204ENST00000422491 ERG28Q9UKR5 140 aa8.26□□□□□ -1.09
USP54-204ENST00000422491 LINC01549A6NIU2 74 aa8.25□□□□□ -1.09
USP54-204ENST00000422491 LY6LH3BQJ8 138 aa8.25□□□□□ -1.09
USP54-204ENST00000422491 UBE2D3P61077 147 aa8.25□□□□□ -1.09
USP54-204ENST00000422491 UBE2D2P62837 147 aa8.25□□□□□ -1.09
USP54-204ENST00000422491 IGHV7-4-1A0A0J9YVY3 117 aa8.25□□□□□ -1.09
USP54-204ENST00000422491 PRAC2D3DTV9 90 aa8.25□□□□□ -1.09
USP54-204ENST00000422491 CDX4O14627 284 aaPredicted RBP8.25□□□□□ -1.09
USP54-204ENST00000422491 GATA3P23771 443 aa8.25□□□□□ -1.09
USP54-204ENST00000422491 COX7A1P24310 79 aa8.25□□□□□ -1.09
USP54-204ENST00000422491 ZFP2Q6ZN57 461 aa8.25□□□□□ -1.09
USP54-204ENST00000422491 PTH2Q96A98 100 aa8.25□□□□□ -1.09
USP54-204ENST00000422491 ZGRF1Q86YA3 2104 aa8.25□□□□□ -1.09
USP54-204ENST00000422491 LINC01548A6NM66 108 aa8.24□□□□□ -1.09
USP54-204ENST00000422491 C5orf64Q2M2E5 130 aa8.24□□□□□ -1.09
USP54-204ENST00000422491 TMEM78Q5T7P6 136 aa8.24□□□□□ -1.09
USP54-204ENST00000422491 RNF183Q96D59 192 aa8.24□□□□□ -1.09
USP54-204ENST00000422491 A6NJY4 79 aa8.24□□□□□ -1.09
USP54-204ENST00000422491 TIMM23O14925 209 aa8.24□□□□□ -1.09
USP54-204ENST00000422491 PSMB2P49721 201 aa8.24□□□□□ -1.09
USP54-204ENST00000422491 TEN1Q86WV5 123 aa8.24□□□□□ -1.09
USP54-204ENST00000422491 NEXN-AS1Q8NBZ9 246 aa8.24□□□□□ -1.09
USP54-204ENST00000422491 PPDPFLQ8WWR9 84 aa8.24□□□□□ -1.09
USP54-204ENST00000422491 NBR2O15453 112 aa8.23□□□□□ -1.09
USP54-204ENST00000422491 BSPH1Q075Z2 132 aa8.23□□□□□ -1.09
USP54-204ENST00000422491 C21orf62Q9NYP8 219 aa8.23□□□□□ -1.09
USP54-204ENST00000422491 RALYQ9UKM9 306 aaKnown RBP8.23□□□□□ -1.09
USP54-204ENST00000422491 RAXQ9Y2V3 346 aa8.23□□□□□ -1.09
USP54-204ENST00000422491 PKDREJQ9NTG1 2253 aa8.23□□□□□ -1.09
USP54-204ENST00000422491 CD7P09564 240 aa8.23□□□□□ -1.09
USP54-204ENST00000422491 PRADC1Q9BSG0 188 aa8.23□□□□□ -1.09
USP54-204ENST00000422491 SMIM2Q9BVW6 85 aa8.23□□□□□ -1.09
USP54-204ENST00000422491 LOC107984156A0A0G2JMH3 177 aa8.22□□□□□ -1.09
USP54-204ENST00000422491 IGHV3-23P01764 117 aa8.22□□□□□ -1.09
USP54-204ENST00000422491 COX6B1P14854 86 aa8.22□□□□□ -1.09
USP54-204ENST00000422491 SFTA2Q6UW10 78 aa8.22□□□□□ -1.09
USP54-204ENST00000422491 SBSPONQ8IVN8 264 aa8.22□□□□□ -1.09
USP54-204ENST00000422491 ARL17AQ8IVW1 177 aa8.22□□□□□ -1.09
USP54-204ENST00000422491 OR11H6Q8NGC7 330 aa8.22□□□□□ -1.09
USP54-204ENST00000422491 RNASE6Q93091 150 aaKnown RBP8.22□□□□□ -1.09
USP54-204ENST00000422491 TOMM6Q96B49 74 aa8.22□□□□□ -1.09
USP54-204ENST00000422491 PLEKHB2Q96CS7 222 aa8.22□□□□□ -1.09
USP54-204ENST00000422491 UFC1Q9Y3C8 167 aa8.22□□□□□ -1.09
USP54-204ENST00000422491 NCOR1O75376 2440 aa8.22□□□□□ -1.09
USP54-204ENST00000422491 IGHV4-4A0A075B6R2 117 aa8.22□□□□□ -1.09
USP54-204ENST00000422491 RBAKDNA6NC62 111 aa8.22□□□□□ -1.09
USP54-204ENST00000422491 PRSS29PA6NIE9 313 aa8.22□□□□□ -1.09
USP54-204ENST00000422491 ZNF815PA8K554 130 aa8.22□□□□□ -1.09
USP54-204ENST00000422491 CTSGP08311 255 aa8.22□□□□□ -1.09
USP54-204ENST00000422491 NPBQ8NG41 125 aa8.22□□□□□ -1.09
USP54-204ENST00000422491 SCGB3A1Q96QR1 104 aa8.22□□□□□ -1.09
USP54-204ENST00000422491 CSMD1Q96PZ7 3565 aa8.21□□□□□ -1.09
USP54-204ENST00000422491 SLC25A16P16260 332 aa8.21□□□□□ -1.1
USP54-204ENST00000422491 RNF182Q8N6D2 247 aa8.21□□□□□ -1.1
USP54-204ENST00000422491 IGFBPL1Q8WX77 278 aa8.21□□□□□ -1.1
USP54-204ENST00000422491 VCX2Q9H322 139 aa8.21□□□□□ -1.1
USP54-204ENST00000422491 TCL1BO95988 128 aa8.21□□□□□ -1.1
USP54-204ENST00000422491 BAALCQ8WXS3 180 aa8.21□□□□□ -1.1
USP54-204ENST00000422491 RASL10AQ92737 203 aa8.21□□□□□ -1.1
USP54-204ENST00000422491 KLK15Q9H2R5 256 aa8.21□□□□□ -1.1
USP54-204ENST00000422491 IGHV3OR16-8A0A075B7F1 116 aa8.2□□□□□ -1.1
USP54-204ENST00000422491 NDPQ00604 133 aa8.2□□□□□ -1.1
USP54-204ENST00000422491 ORMDL2Q53FV1 153 aa8.2□□□□□ -1.1
USP54-204ENST00000422491 NDUFA11Q86Y39 141 aa8.2□□□□□ -1.1
USP54-204ENST00000422491 VKORC1Q9BQB6 163 aa8.2□□□□□ -1.1
USP54-204ENST00000422491 AGPAT4-IT1Q9H0P7 198 aa8.2□□□□□ -1.1
USP54-204ENST00000422491 ZNF688P0C7X2 276 aa8.2□□□□□ -1.1
USP54-204ENST00000422491 SRSF9Q13242 221 aaKnown RBP eCLIP8.2□□□□□ -1.1
USP54-204ENST00000422491 PLA2G2CQ5R387 149 aa8.2□□□□□ -1.1
USP54-204ENST00000422491 LYRM7Q5U5X0 104 aa8.2□□□□□ -1.1
USP54-204ENST00000422491 SCGB1D4Q6XE38 83 aa8.2□□□□□ -1.1
USP54-204ENST00000422491 SLC50A1Q9BRV3 221 aa8.2□□□□□ -1.1
USP54-204ENST00000422491 SPANXN1Q5VSR9 72 aa8.19□□□□□ -1.1
USP54-204ENST00000422491 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.19□□□□□ -1.1
USP54-204ENST00000422491 Q6ZQT7 251 aa8.19□□□□□ -1.1
USP54-204ENST00000422491 ANAPC13Q9BS18 74 aa8.19□□□□□ -1.1
USP54-204ENST00000422491 MSRB2Q9Y3D2 182 aa8.19□□□□□ -1.1
USP54-204ENST00000422491 RP1L1Q8IWN7 2480 aaPredicted RBP8.19□□□□□ -1.1
USP54-204ENST00000422491 TRBV20-1A0A075B6N2 111 aa8.19□□□□□ -1.1
USP54-204ENST00000422491 DEFB109BQ30KR1 87 aa8.19□□□□□ -1.1
USP54-204ENST00000422491 KIR2DL4Q99706 377 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms