RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 TMEM167BQ9NRX6 74 aa2.57□□□□□ -2
VPS54-204ENST00000416400 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.57□□□□□ -2
VPS54-204ENST00000416400 RBM12B-AS1Q9P1G2 102 aa2.57□□□□□ -2
VPS54-204ENST00000416400 UFC1Q9Y3C8 167 aa2.57□□□□□ -2
VPS54-204ENST00000416400 ZNF706Q9Y5V0 76 aaPredicted RBP2.57□□□□□ -2
VPS54-204ENST00000416400 SIP14410 1827 aa2.56□□□□□ -2
VPS54-204ENST00000416400 KIAA1671Q9BY89 1806 aa2.56□□□□□ -2
VPS54-204ENST00000416400 TRIP11Q15643 1979 aa2.56□□□□□ -2
VPS54-204ENST00000416400 H3BMG7 143 aa2.56□□□□□ -2
VPS54-204ENST00000416400 H3BP45 60 aa2.56□□□□□ -2
VPS54-204ENST00000416400 H3BUT2 72 aa2.56□□□□□ -2
VPS54-204ENST00000416400 OR7C1O76099 320 aaPredicted RBP2.56□□□□□ -2
VPS54-204ENST00000416400 SCGB1C2P0DMR2 95 aa2.56□□□□□ -2
VPS54-204ENST00000416400 EVI2AP22794 236 aa2.56□□□□□ -2
VPS54-204ENST00000416400 CBLN1P23435 193 aa2.56□□□□□ -2
VPS54-204ENST00000416400 SRIP30626 198 aa2.56□□□□□ -2
VPS54-204ENST00000416400 ASIPP42127 132 aa2.56□□□□□ -2
VPS54-204ENST00000416400 TAS2R45P59539 299 aa2.56□□□□□ -2
VPS54-204ENST00000416400 FXYD4P59646 89 aa2.56□□□□□ -2
VPS54-204ENST00000416400 SLC38A11Q08AI6 406 aa2.56□□□□□ -2
VPS54-204ENST00000416400 IGFBP7Q16270 282 aa2.56□□□□□ -2
VPS54-204ENST00000416400 Q6Q795 121 aa2.56□□□□□ -2
VPS54-204ENST00000416400 TMEM14EPQ6UXP3 125 aa2.56□□□□□ -2
VPS54-204ENST00000416400 DGAT2L6Q6ZPD8 337 aa2.56□□□□□ -2
VPS54-204ENST00000416400 MARCH3Q86UD3 253 aa2.56□□□□□ -2
VPS54-204ENST00000416400 OR10D3Q8NH80 312 aa2.56□□□□□ -2
VPS54-204ENST00000416400 APOBEC3DQ96AK3 386 aaPredicted RBP2.56□□□□□ -2
VPS54-204ENST00000416400 MAP1LC3AQ9H492 121 aa2.56□□□□□ -2
VPS54-204ENST00000416400 WDR54Q9H977 334 aa2.56□□□□□ -2
VPS54-204ENST00000416400 HIGD1BQ9P298 99 aa2.56□□□□□ -2
VPS54-204ENST00000416400 ZNF831Q5JPB2 1677 aa2.56□□□□□ -2
VPS54-204ENST00000416400 STRCP1A6NGW2 1772 aa2.56□□□□□ -2
VPS54-204ENST00000416400 ITGB4P16144 1822 aa2.56□□□□□ -2
VPS54-204ENST00000416400 DOCK1Q14185 1865 aa2.56□□□□□ -2
VPS54-204ENST00000416400 NOTCH2Q04721 2471 aa2.56□□□□□ -2
VPS54-204ENST00000416400 IGKV1D-42A0A075B6H8 117 aa2.55□□□□□ -2
VPS54-204ENST00000416400 A0A1W2PQD3 144 aa2.55□□□□□ -2
VPS54-204ENST00000416400 SMIM27A0A1W2PRY6 76 aa2.55□□□□□ -2
VPS54-204ENST00000416400 PGPA6NDG6 321 aa2.55□□□□□ -2
VPS54-204ENST00000416400 C2orf70A6NJV1 201 aa2.55□□□□□ -2
VPS54-204ENST00000416400 PDCD6O75340 191 aa2.55□□□□□ -2
VPS54-204ENST00000416400 PGLYRP1O75594 196 aaPredicted RBP2.55□□□□□ -2
VPS54-204ENST00000416400 KLF7O75840 302 aaPredicted RBP2.55□□□□□ -2
VPS54-204ENST00000416400 IGLV3-19P01714 112 aa2.55□□□□□ -2
VPS54-204ENST00000416400 COL4A1P02462 1669 aa2.55□□□□□ -2
VPS54-204ENST00000416400 SPANXN5Q5MJ07 72 aa2.55□□□□□ -2
VPS54-204ENST00000416400 TMEM42Q69YG0 159 aa2.55□□□□□ -2
VPS54-204ENST00000416400 OR5AS1Q8N127 324 aa2.55□□□□□ -2
VPS54-204ENST00000416400 ANKRD31Q8N7Z5 1873 aa2.55□□□□□ -2
VPS54-204ENST00000416400 ZNF436-AS1Q8NC38 126 aaPredicted RBP2.55□□□□□ -2
VPS54-204ENST00000416400 OR2M3Q8NG83 312 aa2.55□□□□□ -2
VPS54-204ENST00000416400 OR13C6PQ8NH95 151 aa2.55□□□□□ -2
VPS54-204ENST00000416400 CHD5Q8TDI0 1954 aa2.55□□□□□ -2
VPS54-204ENST00000416400 ZNF721Q8TF20 911 aa2.55□□□□□ -2
VPS54-204ENST00000416400 H1FXQ92522 213 aaKnown RBP2.55□□□□□ -2
VPS54-204ENST00000416400 SPTSSAQ969W0 71 aa2.55□□□□□ -2
VPS54-204ENST00000416400 PTH2Q96A98 100 aa2.55□□□□□ -2
VPS54-204ENST00000416400 CLDN23Q96B33 292 aa2.55□□□□□ -2
VPS54-204ENST00000416400 BORCS8Q96FH0 119 aa2.55□□□□□ -2
VPS54-204ENST00000416400 AMELYQ99218 206 aa2.55□□□□□ -2
VPS54-204ENST00000416400 V9GYV3 84 aa2.55□□□□□ -2
VPS54-204ENST00000416400 ANKRD36A6QL64 1941 aa2.54□□□□□ -2
VPS54-204ENST00000416400 MIA3Q5JRA6 1907 aa2.54□□□□□ -2
VPS54-204ENST00000416400 DOCK5Q9H7D0 1870 aa2.54□□□□□ -2
VPS54-204ENST00000416400 TSC2P49815 1807 aa2.54□□□□□ -2
VPS54-204ENST00000416400 STRCQ7RTU9 1775 aa2.54□□□□□ -2
VPS54-204ENST00000416400 TNKS1BP1Q9C0C2 1729 aaKnown RBP2.54□□□□□ -2
VPS54-204ENST00000416400 TRBV20-1A0A075B6N2 111 aa2.54□□□□□ -2
VPS54-204ENST00000416400 TMED7-TICAM2A0A0A6YYA0 188 aa2.54□□□□□ -2
VPS54-204ENST00000416400 TRAV8-3A0A0A6YYJ7 113 aa2.54□□□□□ -2
VPS54-204ENST00000416400 IGHV1-24A0A0C4DH33 117 aa2.54□□□□□ -2
VPS54-204ENST00000416400 SPRR5A0A1B0GTR4 108 aa2.54□□□□□ -2
VPS54-204ENST00000416400 FNDC10F2Z333 226 aa2.54□□□□□ -2
VPS54-204ENST00000416400 H3BSH0 61 aa2.54□□□□□ -2
VPS54-204ENST00000416400 M0QXV9 152 aa2.54□□□□□ -2
VPS54-204ENST00000416400 CNIH1O95406 144 aa2.54□□□□□ -2
VPS54-204ENST00000416400 NAPSAO96009 420 aa2.54□□□□□ -2
VPS54-204ENST00000416400 IGHV3-7P01780 117 aa2.54□□□□□ -2
VPS54-204ENST00000416400 IFITM1P13164 125 aa2.54□□□□□ -2
VPS54-204ENST00000416400 HLA-DRB4P13762 266 aa2.54□□□□□ -2
VPS54-204ENST00000416400 CTLA4P16410 223 aa2.54□□□□□ -2
VPS54-204ENST00000416400 RPS28P62857 69 aaKnown RBP2.54□□□□□ -2
VPS54-204ENST00000416400 CATR1Q13166 79 aa2.54□□□□□ -2
VPS54-204ENST00000416400 FAM53BQ14153 422 aa2.54□□□□□ -2
VPS54-204ENST00000416400 LGALS9BQ3B8N2 356 aa2.54□□□□□ -2
VPS54-204ENST00000416400 IBA57Q5T440 356 aaKnown RBP2.54□□□□□ -2
VPS54-204ENST00000416400 PRR9Q5T870 116 aa2.54□□□□□ -2
VPS54-204ENST00000416400 LINC01545Q5VT33 79 aa2.54□□□□□ -2
VPS54-204ENST00000416400 LGALS9CQ6DKI2 356 aa2.54□□□□□ -2
VPS54-204ENST00000416400 EBLN2Q6P2I7 272 aa2.54□□□□□ -2
VPS54-204ENST00000416400 TCF23Q7RTU1 214 aa2.54□□□□□ -2
VPS54-204ENST00000416400 C6orf201Q7Z4U5 140 aa2.54□□□□□ -2
VPS54-204ENST00000416400 OOSP2Q86WS3 158 aa2.54□□□□□ -2
VPS54-204ENST00000416400 FAM19A2Q8N3H0 131 aa2.54□□□□□ -2
VPS54-204ENST00000416400 C2orf73Q8N5S3 287 aaPredicted RBP2.54□□□□□ -2
VPS54-204ENST00000416400 OR8B12Q8NGG6 310 aa2.54□□□□□ -2
VPS54-204ENST00000416400 OR51H1Q8NH63 302 aa2.54□□□□□ -2
VPS54-204ENST00000416400 COX14Q96I36 57 aa2.54□□□□□ -2
VPS54-204ENST00000416400 LINC01587Q99440 93 aa2.54□□□□□ -2
VPS54-204ENST00000416400 TMEM133Q9H2Q1 129 aa2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms