RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 SEM1Q6ZVN7 128 aa5.82□□□□□ -1.48
SCN9A-202ENST00000409435 AGMATQ9BSE5 352 aa5.82□□□□□ -1.48
SCN9A-202ENST00000409435 RETNQ9HD89 108 aa5.82□□□□□ -1.48
SCN9A-202ENST00000409435 TMEM14BQ9NUH8 114 aa5.82□□□□□ -1.48
SCN9A-202ENST00000409435 PRO1854Q9UHT4 67 aa5.82□□□□□ -1.48
SCN9A-202ENST00000409435 PTPN13Q12923 2485 aa5.82□□□□□ -1.48
SCN9A-202ENST00000409435 COX8AP10176 69 aa5.82□□□□□ -1.48
SCN9A-202ENST00000409435 KLF5Q13887 457 aaPredicted RBP5.82□□□□□ -1.48
SCN9A-202ENST00000409435 LINC01551Q86U37 167 aa5.82□□□□□ -1.48
SCN9A-202ENST00000409435 C4orf3Q8WVX3 66 aa5.82□□□□□ -1.48
SCN9A-202ENST00000409435 LY96Q9Y6Y9 160 aa5.82□□□□□ -1.48
SCN9A-202ENST00000409435 ALPK2Q86TB3 2170 aa5.82□□□□□ -1.48
SCN9A-202ENST00000409435 C17orf98A8MV24 154 aa5.82□□□□□ -1.48
SCN9A-202ENST00000409435 GZMMP51124 257 aa5.82□□□□□ -1.48
SCN9A-202ENST00000409435 C11orf45Q8TAV5 145 aa5.82□□□□□ -1.48
SCN9A-202ENST00000409435 ZNRD1Q9P1U0 126 aa5.82□□□□□ -1.48
SCN9A-202ENST00000409435 NDUFC2-KCTD14E9PQ53 114 aa5.82□□□□□ -1.48
SCN9A-202ENST00000409435 H0YJW9 148 aa5.82□□□□□ -1.48
SCN9A-202ENST00000409435 SIVA1O15304 175 aa5.82□□□□□ -1.48
SCN9A-202ENST00000409435 C1QCP02747 245 aa5.82□□□□□ -1.48
SCN9A-202ENST00000409435 RNASE2P10153 161 aaKnown RBP5.82□□□□□ -1.48
SCN9A-202ENST00000409435 CEND1Q8N111 149 aa5.82□□□□□ -1.48
SCN9A-202ENST00000409435 DOCK4Q8N1I0 1966 aa5.82□□□□□ -1.48
SCN9A-202ENST00000409435 PYYP10082 97 aa5.81□□□□□ -1.48
SCN9A-202ENST00000409435 SLURP1P55000 103 aa5.81□□□□□ -1.48
SCN9A-202ENST00000409435 NYNRINQ9P2P1 1898 aaKnown RBP5.81□□□□□ -1.48
SCN9A-202ENST00000409435 A0A0B4J2C4 111 aa5.81□□□□□ -1.48
SCN9A-202ENST00000409435 A0A1B0GTI1 187 aa5.81□□□□□ -1.48
SCN9A-202ENST00000409435 PRIMA1Q86XR5 153 aa5.81□□□□□ -1.48
SCN9A-202ENST00000409435 NUP35Q8NFH5 326 aa5.81□□□□□ -1.48
SCN9A-202ENST00000409435 PSG8Q9UQ74 426 aa5.81□□□□□ -1.48
SCN9A-202ENST00000409435 ARID1AO14497 2285 aa5.81□□□□□ -1.48
SCN9A-202ENST00000409435 PRSS29PA6NIE9 313 aa5.81□□□□□ -1.48
SCN9A-202ENST00000409435 LYZL4Q96KX0 146 aa5.81□□□□□ -1.48
SCN9A-202ENST00000409435 SLC25A39Q9BZJ4 359 aaPredicted RBP5.81□□□□□ -1.48
SCN9A-202ENST00000409435 TRAV1-1A0A0B4J248 108 aa5.81□□□□□ -1.48
SCN9A-202ENST00000409435 hADV29S1A0JD25 119 aa5.81□□□□□ -1.48
SCN9A-202ENST00000409435 SPRY2O43597 315 aa5.81□□□□□ -1.48
SCN9A-202ENST00000409435 TCRAP04437 139 aa5.81□□□□□ -1.48
SCN9A-202ENST00000409435 LYPD6BQ8NI32 183 aa5.81□□□□□ -1.48
SCN9A-202ENST00000409435 TNFRSF13BO14836 293 aaPredicted RBP5.81□□□□□ -1.48
SCN9A-202ENST00000409435 CCL25O15444 150 aa5.8□□□□□ -1.48
SCN9A-202ENST00000409435 NPYP01303 97 aa5.8□□□□□ -1.48
SCN9A-202ENST00000409435 SEC61GP60059 68 aa5.8□□□□□ -1.48
SCN9A-202ENST00000409435 RPL36AP83881 106 aaKnown RBP5.8□□□□□ -1.48
SCN9A-202ENST00000409435 FAM104BQ5XKR9 115 aa5.8□□□□□ -1.48
SCN9A-202ENST00000409435 LY6G5BQ8NDX9 201 aa5.8□□□□□ -1.48
SCN9A-202ENST00000409435 RPL36ALQ969Q0 106 aaKnown RBP5.8□□□□□ -1.48
SCN9A-202ENST00000409435 U3KQK5 164 aa5.8□□□□□ -1.48
SCN9A-202ENST00000409435 TSC2P49815 1807 aa5.8□□□□□ -1.48
SCN9A-202ENST00000409435 COL4A3Q01955 1670 aa5.8□□□□□ -1.48
SCN9A-202ENST00000409435 TRAV12-2A0A075B6T6 113 aa5.8□□□□□ -1.48
SCN9A-202ENST00000409435 VCYO14598 125 aa5.8□□□□□ -1.48
SCN9A-202ENST00000409435 CFHR3Q02985 330 aa5.8□□□□□ -1.48
SCN9A-202ENST00000409435 STPG4Q8N801 248 aa5.8□□□□□ -1.48
SCN9A-202ENST00000409435 HEATR1Q9H583 2144 aaKnown RBP5.8□□□□□ -1.48
SCN9A-202ENST00000409435 NTF4P34130 210 aa5.8□□□□□ -1.48
SCN9A-202ENST00000409435 C9orf139Q6ZV77 190 aa5.8□□□□□ -1.48
SCN9A-202ENST00000409435 RNASE8Q8TDE3 154 aaKnown RBP5.8□□□□□ -1.48
SCN9A-202ENST00000409435 KIF26BQ2KJY2 2108 aa5.8□□□□□ -1.48
SCN9A-202ENST00000409435 C6orf226Q5I0X4 101 aa5.8□□□□□ -1.48
SCN9A-202ENST00000409435 SPATA31B1PQ5VZV4 182 aa5.8□□□□□ -1.48
SCN9A-202ENST00000409435 RNF126Q9BV68 326 aa5.8□□□□□ -1.48
SCN9A-202ENST00000409435 RFNGQ9Y644 331 aa5.8□□□□□ -1.48
SCN9A-202ENST00000409435 DOCK7Q96N67 2140 aa5.79□□□□□ -1.48
SCN9A-202ENST00000409435 ALPK3Q96L96 1907 aa5.79□□□□□ -1.48
SCN9A-202ENST00000409435 RS1O15537 224 aa5.79□□□□□ -1.48
SCN9A-202ENST00000409435 HLA-DRB4P13762 266 aa5.79□□□□□ -1.48
SCN9A-202ENST00000409435 PAX9P55771 341 aa5.79□□□□□ -1.48
SCN9A-202ENST00000409435 VWC2Q2TAL6 325 aa5.79□□□□□ -1.48
SCN9A-202ENST00000409435 C8orf31Q8N9H6 132 aa5.79□□□□□ -1.48
SCN9A-202ENST00000409435 PTH2Q96A98 100 aa5.79□□□□□ -1.48
SCN9A-202ENST00000409435 HLA-DRB4X5D2U9 266 aa5.79□□□□□ -1.48
SCN9A-202ENST00000409435 PKDREJQ9NTG1 2253 aa5.79□□□□□ -1.48
SCN9A-202ENST00000409435 PRB2P02812 416 aaPredicted RBP5.79□□□□□ -1.48
SCN9A-202ENST00000409435 Q6ZR03 302 aa5.79□□□□□ -1.48
SCN9A-202ENST00000409435 TM2D1Q9BX74 207 aa5.79□□□□□ -1.48
SCN9A-202ENST00000409435 TINCRA0A1B0GVN0 87 aa5.79□□□□□ -1.48
SCN9A-202ENST00000409435 NDUFA4O00483 81 aa5.79□□□□□ -1.48
SCN9A-202ENST00000409435 TM2D2Q9BX73 214 aa5.79□□□□□ -1.48
SCN9A-202ENST00000409435 TMEM14DPA8MWL7 114 aa5.79□□□□□ -1.48
SCN9A-202ENST00000409435 K7ERS5 55 aa5.79□□□□□ -1.48
SCN9A-202ENST00000409435 GPHA2Q96T91 129 aa5.79□□□□□ -1.48
SCN9A-202ENST00000409435 TRAV25A0A0B4J276 109 aa5.78□□□□□ -1.48
SCN9A-202ENST00000409435 HELZP42694 1942 aaKnown RBP5.78□□□□□ -1.48
SCN9A-202ENST00000409435 TRAV13-2A0A0B4J235 113 aa5.78□□□□□ -1.48
SCN9A-202ENST00000409435 WIPF3A6NGB9 483 aa5.78□□□□□ -1.48
SCN9A-202ENST00000409435 IGLV2-23P01705 113 aa5.78□□□□□ -1.48
SCN9A-202ENST00000409435 WIPF2Q8TF74 440 aaPredicted RBP5.78□□□□□ -1.48
SCN9A-202ENST00000409435 TMEM131Q92545 1883 aa5.78□□□□□ -1.48
SCN9A-202ENST00000409435 DOCK9Q9BZ29 2069 aa5.78□□□□□ -1.48
SCN9A-202ENST00000409435 FAM236DA0A1B0GTK5 79 aa5.78□□□□□ -1.48
SCN9A-202ENST00000409435 IGLC7A0M8Q6 106 aa5.78□□□□□ -1.48
SCN9A-202ENST00000409435 FAM236CP0DP71 79 aa5.78□□□□□ -1.48
SCN9A-202ENST00000409435 PPIFP30405 207 aaKnown RBP5.78□□□□□ -1.48
SCN9A-202ENST00000409435 BLCAPP62952 87 aa5.78□□□□□ -1.48
SCN9A-202ENST00000409435 NDUFS5O43920 106 aa5.78□□□□□ -1.48
SCN9A-202ENST00000409435 NHLRC4P0CG21 123 aaPredicted RBP5.78□□□□□ -1.48
SCN9A-202ENST00000409435 CFPP27918 469 aa5.78□□□□□ -1.48
SCN9A-202ENST00000409435 LYRM9A8MSI8 78 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms