RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 DKK1O94907 266 aa4.82□□□□□ -1.64
SCN1A-203ENST00000409050 RPL35AP18077 110 aaKnown RBP4.82□□□□□ -1.64
SCN1A-203ENST00000409050 LINC01620Q4KN68 170 aa4.82□□□□□ -1.64
SCN1A-203ENST00000409050 NTN5Q8WTR8 489 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-203ENST00000409050 ODF3Q96PU9 254 aa4.82□□□□□ -1.64
SCN1A-203ENST00000409050 IGHV3-73A0A0B4J1V6 119 aa4.82□□□□□ -1.64
SCN1A-203ENST00000409050 ATP5EP56381 51 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-203ENST00000409050 NPC2P61916 151 aa4.82□□□□□ -1.64
SCN1A-203ENST00000409050 RBM3P98179 157 aaKnown RBP4.82□□□□□ -1.64
SCN1A-203ENST00000409050 NAA38Q9BRA0 125 aaKnown RBP4.82□□□□□ -1.64
SCN1A-203ENST00000409050 MYO7AQ13402 2215 aa4.81□□□□□ -1.64
SCN1A-203ENST00000409050 F5H768 121 aa4.81□□□□□ -1.64
SCN1A-203ENST00000409050 MAJINQ3KP22 176 aa4.81□□□□□ -1.64
SCN1A-203ENST00000409050 COL4A1P02462 1669 aa4.81□□□□□ -1.64
SCN1A-203ENST00000409050 TRBV10-2A0A0K0K1G8 114 aa4.81□□□□□ -1.64
SCN1A-203ENST00000409050 E9PLD3 99 aa4.81□□□□□ -1.64
SCN1A-203ENST00000409050 CTRLP40313 264 aa4.81□□□□□ -1.64
SCN1A-203ENST00000409050 SPINK13Q1W4C9 94 aa4.81□□□□□ -1.64
SCN1A-203ENST00000409050 TRBV10-1A0A0K0K1A3 114 aa4.81□□□□□ -1.64
SCN1A-203ENST00000409050 FSTL3O95633 263 aa4.81□□□□□ -1.64
SCN1A-203ENST00000409050 IGHV3-53P01767 116 aa4.81□□□□□ -1.64
SCN1A-203ENST00000409050 LINC00479Q96M42 142 aa4.81□□□□□ -1.64
SCN1A-203ENST00000409050 A0A0J9YXY3 114 aa4.81□□□□□ -1.64
SCN1A-203ENST00000409050 H7C423 109 aa4.81□□□□□ -1.64
SCN1A-203ENST00000409050 IGHG2P01859 326 aa4.81□□□□□ -1.64
SCN1A-203ENST00000409050 C9orf66Q5T8R8 295 aa4.81□□□□□ -1.64
SCN1A-203ENST00000409050 UNQ6494/PRO21346Q6UXR6 183 aa4.81□□□□□ -1.64
SCN1A-203ENST00000409050 Q6ZR03 302 aa4.81□□□□□ -1.64
SCN1A-203ENST00000409050 C9orf47Q6ZRZ4 202 aa4.81□□□□□ -1.64
SCN1A-203ENST00000409050 Q8N1Y9 231 aa4.81□□□□□ -1.64
SCN1A-203ENST00000409050 CYYR1Q96J86 154 aa4.81□□□□□ -1.64
SCN1A-203ENST00000409050 UBE2E2Q96LR5 201 aa4.81□□□□□ -1.64
SCN1A-203ENST00000409050 DOCK6Q96HP0 2047 aa4.8□□□□□ -1.64
SCN1A-203ENST00000409050 KNL1Q8NG31 2342 aa4.8□□□□□ -1.64
SCN1A-203ENST00000409050 DEFB130BP0DP73 79 aa4.8□□□□□ -1.64
SCN1A-203ENST00000409050 DEFB130AP0DP74 79 aa4.8□□□□□ -1.64
SCN1A-203ENST00000409050 TM2D2Q9BX73 214 aa4.8□□□□□ -1.64
SCN1A-203ENST00000409050 VPREB3Q9UKI3 123 aa4.8□□□□□ -1.64
SCN1A-203ENST00000409050 NPSP0C0P6 89 aa4.8□□□□□ -1.64
SCN1A-203ENST00000409050 MORN5Q5VZ52 161 aa4.8□□□□□ -1.64
SCN1A-203ENST00000409050 DUX4L9Q6RFH8 374 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-203ENST00000409050 VSIG2Q96IQ7 327 aa4.8□□□□□ -1.64
SCN1A-203ENST00000409050 IGFL2Q6UWQ7 119 aa4.8□□□□□ -1.64
SCN1A-203ENST00000409050 ZNF625Q96I27 306 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-203ENST00000409050 ICOSQ9Y6W8 199 aa4.8□□□□□ -1.64
SCN1A-203ENST00000409050 IGHV1-58A0A0C4DH39 117 aa4.8□□□□□ -1.64
SCN1A-203ENST00000409050 A4D1N5 150 aa4.8□□□□□ -1.64
SCN1A-203ENST00000409050 TMEM256-PLSCR3K7ERE1 68 aa4.8□□□□□ -1.64
SCN1A-203ENST00000409050 TFF1P04155 84 aa4.8□□□□□ -1.64
SCN1A-203ENST00000409050 GP9P14770 177 aa4.8□□□□□ -1.64
SCN1A-203ENST00000409050 PFN2P35080 140 aa4.8□□□□□ -1.64
SCN1A-203ENST00000409050 LINC00643Q86TS7 51 aa4.8□□□□□ -1.64
SCN1A-203ENST00000409050 TOMM6Q96B49 74 aa4.8□□□□□ -1.64
SCN1A-203ENST00000409050 ETDCA0A1B0GVM5 59 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 CRYGCP07315 174 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 C3orf56Q8N813 242 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 CHD5Q8TDI0 1954 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 K7EQD1 137 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 LHBP01229 141 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 PSMB8P28062 276 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 BRD3OSQ6XYD6 125 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 DYNAPQ8N1N2 210 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 MUC7Q8TAX7 377 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 AGPAT4-IT1Q9H0P7 198 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 ZMAT4Q9H898 229 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 SPANXB1Q9NS25 103 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-203ENST00000409050 XCL2Q9UBD3 114 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 LINC00527Q9UJ94 153 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 BRWD1Q9NSI6 2320 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 RALGAPA1Q6GYQ0 2036 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 IGF2BP2-AS1Q96M15 143 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 TPRP12270 2363 aaKnown RBP4.79□□□□□ -1.64
SCN1A-203ENST00000409050 POLR2AP24928 1970 aaKnown RBP4.79□□□□□ -1.64
SCN1A-203ENST00000409050 A0A1B0GX51 115 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 WI2-2373I1.2A0A1W2PRP0 233 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 MLANAQ16655 118 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 WDR86Q86TI4 376 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 Q9H8V8 135 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 PROK2Q9HC23 129 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 IGLV11-55A0A075B6I3 123 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 GNLYP22749 145 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 INSL3P51460 131 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 CR1LQ2VPA4 569 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 C1orf43Q9BWL3 253 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 V9GYY9 64 aa4.79□□□□□ -1.64
SCN1A-203ENST00000409050 LTBP1Q14766 1721 aa4.78□□□□□ -1.64
SCN1A-203ENST00000409050 I3L2K1 104 aa4.78□□□□□ -1.64
SCN1A-203ENST00000409050 K7EN84 100 aa4.78□□□□□ -1.64
SCN1A-203ENST00000409050 COX7A2LO14548 114 aa4.78□□□□□ -1.64
SCN1A-203ENST00000409050 C14orf177Q52M58 125 aa4.78□□□□□ -1.64
SCN1A-203ENST00000409050 FXYD7P58549 80 aa4.78□□□□□ -1.64
SCN1A-203ENST00000409050 GPHB5Q86YW7 130 aa4.78□□□□□ -1.64
SCN1A-203ENST00000409050 IL17DQ8TAD2 202 aa4.78□□□□□ -1.64
SCN1A-203ENST00000409050 COX7B2Q8TF08 81 aa4.78□□□□□ -1.64
SCN1A-203ENST00000409050 NDUFA1O15239 70 aa4.78□□□□□ -1.64
SCN1A-203ENST00000409050 ANGP03950 147 aaKnown RBP4.78□□□□□ -1.64
SCN1A-203ENST00000409050 SND1-IT1Q9HBX3 110 aa4.78□□□□□ -1.64
SCN1A-203ENST00000409050 PLXNA4Q9HCM2 1894 aa4.78□□□□□ -1.64
SCN1A-203ENST00000409050 CENPVL3A0A0U1RRI6 287 aa4.78□□□□□ -1.65
SCN1A-203ENST00000409050 SPART-AS1P0CW21 52 aa4.78□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 101.3 ms