RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 CCDC168Q8NDH2 2452 aa12.63□□□□□ -0.39
PCDH1-203ENST00000394536 DMXL2Q8TDJ6 3036 aa12.63□□□□□ -0.39
PCDH1-203ENST00000394536 PRAC2D3DTV9 90 aa12.63□□□□□ -0.39
PCDH1-203ENST00000394536 LGALS9BQ3B8N2 356 aa12.63□□□□□ -0.39
PCDH1-203ENST00000394536 LGALS9CQ6DKI2 356 aa12.63□□□□□ -0.39
PCDH1-203ENST00000394536 SLC50A1Q9BRV3 221 aa12.63□□□□□ -0.39
PCDH1-203ENST00000394536 APOMO95445 188 aa12.62□□□□□ -0.39
PCDH1-203ENST00000394536 TGFAP01135 160 aa12.62□□□□□ -0.39
PCDH1-203ENST00000394536 C14orf178Q8N769 122 aaPredicted RBP12.62□□□□□ -0.39
PCDH1-203ENST00000394536 CFAP47Q6ZTR5 3102 aa12.62□□□□□ -0.39
PCDH1-203ENST00000394536 SAA4P35542 130 aa12.62□□□□□ -0.39
PCDH1-203ENST00000394536 EFNA4P52798 201 aa12.62□□□□□ -0.39
PCDH1-203ENST00000394536 EMP1P54849 157 aa12.62□□□□□ -0.39
PCDH1-203ENST00000394536 DTX2Q86UW9 622 aa12.62□□□□□ -0.39
PCDH1-203ENST00000394536 SRSF8Q9BRL6 282 aaKnown RBP12.62□□□□□ -0.39
PCDH1-203ENST00000394536 C7orf69Q9H7B7 122 aa12.62□□□□□ -0.39
PCDH1-203ENST00000394536 SRSF1Q07955 248 aaKnown RBP eCLIP12.61□□□□□ -0.39
PCDH1-203ENST00000394536 OR1N2Q8NGR9 330 aa12.61□□□□□ -0.39
PCDH1-203ENST00000394536 IGLV2-11P01706 119 aa12.61□□□□□ -0.39
PCDH1-203ENST00000394536 LAGE3Q14657 143 aa12.61□□□□□ -0.39
PCDH1-203ENST00000394536 CLEC2AQ6UVW9 174 aa12.61□□□□□ -0.39
PCDH1-203ENST00000394536 CHAC1Q9BUX1 264 aa12.61□□□□□ -0.39
PCDH1-203ENST00000394536 CYSLTR1Q9Y271 337 aa12.61□□□□□ -0.39
PCDH1-203ENST00000394536 K7EP13 123 aa12.61□□□□□ -0.39
PCDH1-203ENST00000394536 CTSGP08311 255 aa12.61□□□□□ -0.39
PCDH1-203ENST00000394536 ZNF80P51504 273 aaPredicted RBP12.61□□□□□ -0.39
PCDH1-203ENST00000394536 Q8NA96 180 aa12.61□□□□□ -0.39
PCDH1-203ENST00000394536 FANCD2OSQ96PS1 177 aa12.61□□□□□ -0.39
PCDH1-203ENST00000394536 NOTCH2Q04721 2471 aa12.61□□□□□ -0.39
PCDH1-203ENST00000394536 C9orf118A6NHY6 69 aa12.6□□□□□ -0.39
PCDH1-203ENST00000394536 MRPL35Q9NZE8 188 aaKnown RBP12.6□□□□□ -0.39
PCDH1-203ENST00000394536 DMDP11532 3685 aa12.6□□□□□ -0.39
PCDH1-203ENST00000394536 TMEM170BQ5T4T1 132 aa12.6□□□□□ -0.39
PCDH1-203ENST00000394536 PIEZO1Q92508 2521 aa12.6□□□□□ -0.39
PCDH1-203ENST00000394536 SONP18583 2426 aaKnown RBP12.6□□□□□ -0.39
PCDH1-203ENST00000394536 M0R1W7 72 aa12.6□□□□□ -0.39
PCDH1-203ENST00000394536 ASIPP42127 132 aa12.6□□□□□ -0.39
PCDH1-203ENST00000394536 PAX8Q06710 450 aa12.6□□□□□ -0.39
PCDH1-203ENST00000394536 CD300EQ496F6 205 aaPredicted RBP12.59□□□□□ -0.39
PCDH1-203ENST00000394536 ZNF479Q96JC4 524 aa12.59□□□□□ -0.39
PCDH1-203ENST00000394536 MRPL16Q9NX20 251 aaKnown RBP12.59□□□□□ -0.39
PCDH1-203ENST00000394536 A0A1B0GWB2 263 aa12.59□□□□□ -0.39
PCDH1-203ENST00000394536 AGPAT4-IT1Q9H0P7 198 aa12.59□□□□□ -0.39
PCDH1-203ENST00000394536 IGLV11-55A0A075B6I3 123 aa12.59□□□□□ -0.39
PCDH1-203ENST00000394536 H3BRM9 83 aa12.59□□□□□ -0.39
PCDH1-203ENST00000394536 BPESC1Q9GZL8 116 aa12.59□□□□□ -0.39
PCDH1-203ENST00000394536 ASPMQ8IZT6 3477 aa12.58□□□□□ -0.39
PCDH1-203ENST00000394536 PSMB2P49721 201 aa12.58□□□□□ -0.4
PCDH1-203ENST00000394536 LY6DQ14210 128 aa12.58□□□□□ -0.4
PCDH1-203ENST00000394536 ZNF256Q9Y2P7 627 aaPredicted RBP12.58□□□□□ -0.4
PCDH1-203ENST00000394536 KLRB1Q12918 225 aa12.58□□□□□ -0.4
PCDH1-203ENST00000394536 Q5PR19 223 aa12.58□□□□□ -0.4
PCDH1-203ENST00000394536 FAM159AQ6UWV7 190 aa12.58□□□□□ -0.4
PCDH1-203ENST00000394536 ZNF418Q8TF45 676 aaPredicted RBP12.58□□□□□ -0.4
PCDH1-203ENST00000394536 CFHR4Q92496 578 aa12.58□□□□□ -0.4
PCDH1-203ENST00000394536 MYO18BQ8IUG5 2567 aa12.58□□□□□ -0.4
PCDH1-203ENST00000394536 CDKN1BP46527 198 aa12.58□□□□□ -0.4
PCDH1-203ENST00000394536 FOXE3Q13461 319 aa12.58□□□□□ -0.4
PCDH1-203ENST00000394536 FSTL3O95633 263 aa12.57□□□□□ -0.4
PCDH1-203ENST00000394536 CRYGBP07316 175 aa12.57□□□□□ -0.4
PCDH1-203ENST00000394536 HERVK_113P61574 105 aa12.57□□□□□ -0.4
PCDH1-203ENST00000394536 SMAGPQ0VAQ4 97 aa12.57□□□□□ -0.4
PCDH1-203ENST00000394536 NPIPB6E9PJ23 425 aa12.57□□□□□ -0.4
PCDH1-203ENST00000394536 PTPRBP23467 1997 aa12.57□□□□□ -0.4
PCDH1-203ENST00000394536 DEFB1P60022 68 aa12.57□□□□□ -0.4
PCDH1-203ENST00000394536 CRXO43186 299 aaPredicted RBP12.56□□□□□ -0.4
PCDH1-203ENST00000394536 AMTNQ6UX39 209 aa12.56□□□□□ -0.4
PCDH1-203ENST00000394536 OR5A1Q8NGJ0 315 aa12.56□□□□□ -0.4
PCDH1-203ENST00000394536 GTSF1LQ9H1H1 148 aa12.56□□□□□ -0.4
PCDH1-203ENST00000394536 CHTOPQ9Y3Y2 248 aaKnown RBP12.56□□□□□ -0.4
PCDH1-203ENST00000394536 IGHV7-81A0A0B4J1V7 117 aa12.56□□□□□ -0.4
PCDH1-203ENST00000394536 MINOS1Q5TGZ0 78 aa12.56□□□□□ -0.4
PCDH1-203ENST00000394536 C8orf86Q6ZUL3 223 aa12.56□□□□□ -0.4
PCDH1-203ENST00000394536 NEGR1Q7Z3B1 354 aa12.56□□□□□ -0.4
PCDH1-203ENST00000394536 MINOS1-NBL1R4GNA1 71 aa12.56□□□□□ -0.4
PCDH1-203ENST00000394536 TRAV41A0A0B4J266 112 aa12.55□□□□□ -0.4
PCDH1-203ENST00000394536 WI2-2373I1.2A0A1W2PRP0 233 aa12.55□□□□□ -0.4
PCDH1-203ENST00000394536 PRSS47A8MTI9 375 aa12.55□□□□□ -0.4
PCDH1-203ENST00000394536 RBX1P62877 108 aa12.55□□□□□ -0.4
PCDH1-203ENST00000394536 KALRNO60229 2985 aa12.55□□□□□ -0.4
PCDH1-203ENST00000394536 OR11H6Q8NGC7 330 aa12.55□□□□□ -0.4
PCDH1-203ENST00000394536 TACC2O95359 2948 aa12.55□□□□□ -0.4
PCDH1-203ENST00000394536 ZNF815PA8K554 130 aa12.54□□□□□ -0.4
PCDH1-203ENST00000394536 ZNF56Q15929 161 aa12.54□□□□□ -0.4
PCDH1-203ENST00000394536 KIR2DL4Q99706 377 aa12.54□□□□□ -0.4
PCDH1-203ENST00000394536 TRAV21A0A0B4J279 112 aa12.54□□□□□ -0.4
PCDH1-203ENST00000394536 GAS8-AS1O95177 125 aa12.54□□□□□ -0.4
PCDH1-203ENST00000394536 PRSS2P07478 247 aa12.54□□□□□ -0.4
PCDH1-203ENST00000394536 K7ENP7 123 aa12.54□□□□□ -0.4
PCDH1-203ENST00000394536 CD7P09564 240 aa12.54□□□□□ -0.4
PCDH1-203ENST00000394536 FXYD2P54710 66 aa12.54□□□□□ -0.4
PCDH1-203ENST00000394536 A0A1W2PPM0 123 aa12.53□□□□□ -0.4
PCDH1-203ENST00000394536 F6UB75 175 aa12.53□□□□□ -0.4
PCDH1-203ENST00000394536 POLQO75417 2590 aa12.53□□□□□ -0.4
PCDH1-203ENST00000394536 TMEM238LA0A1B0GVL6 79 aa12.53□□□□□ -0.4
PCDH1-203ENST00000394536 A6NJY4 79 aa12.53□□□□□ -0.4
PCDH1-203ENST00000394536 K7EP34 96 aa12.53□□□□□ -0.4
PCDH1-203ENST00000394536 ETDBQ3ZM63 59 aa12.53□□□□□ -0.4
PCDH1-203ENST00000394536 RAI1Q7Z5J4 1906 aaPredicted RBP12.52□□□□□ -0.4
PCDH1-203ENST00000394536 Q8N8P6 123 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms