RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CFHR3Q02985 330 aa9.47□□□□□ -0.89
SYNPO-202ENST00000394243 FOXI1Q12951 378 aa9.47□□□□□ -0.89
SYNPO-202ENST00000394243 VWCEQ96DN2 955 aa9.47□□□□□ -0.89
SYNPO-202ENST00000394243 PYGO2Q9BRQ0 406 aa9.47□□□□□ -0.89
SYNPO-202ENST00000394243 WDR81Q562E7 1941 aa9.47□□□□□ -0.89
SYNPO-202ENST00000394243 A0A0B4J2C4 111 aa9.46□□□□□ -0.89
SYNPO-202ENST00000394243 RHODO00212 210 aa9.46□□□□□ -0.89
SYNPO-202ENST00000394243 DAZ1Q9NQZ3 744 aaKnown RBP9.46□□□□□ -0.89
SYNPO-202ENST00000394243 H3BUX3 64 aa9.46□□□□□ -0.9
SYNPO-202ENST00000394243 OVOL3O00110 214 aa9.46□□□□□ -0.9
SYNPO-202ENST00000394243 CLPSL1A2RUU4 121 aa9.46□□□□□ -0.9
SYNPO-202ENST00000394243 CRYGCP07315 174 aa9.46□□□□□ -0.9
SYNPO-202ENST00000394243 FXYD2P54710 66 aa9.46□□□□□ -0.9
SYNPO-202ENST00000394243 C1orf147Q96MC9 270 aaPredicted RBP9.46□□□□□ -0.9
SYNPO-202ENST00000394243 DEFB131AP59861 70 aa9.46□□□□□ -0.9
SYNPO-202ENST00000394243 BRD3OSQ6XYD6 125 aa9.46□□□□□ -0.9
SYNPO-202ENST00000394243 NDUFB8O95169 186 aa9.45□□□□□ -0.9
SYNPO-202ENST00000394243 ZNF561-AS1K7EIQ3 104 aa9.45□□□□□ -0.9
SYNPO-202ENST00000394243 ZNRF2Q8NHG8 242 aa9.45□□□□□ -0.9
SYNPO-202ENST00000394243 CFHR4Q92496 578 aa9.45□□□□□ -0.9
SYNPO-202ENST00000394243 ORMDL1Q9P0S3 153 aa9.45□□□□□ -0.9
SYNPO-202ENST00000394243 TEX36Q5VZQ5 186 aa9.45□□□□□ -0.9
SYNPO-202ENST00000394243 BRK1Q8WUW1 75 aa9.45□□□□□ -0.9
SYNPO-202ENST00000394243 C20orf78Q9BR46 151 aa9.45□□□□□ -0.9
SYNPO-202ENST00000394243 TMEM14CQ9P0S9 112 aa9.45□□□□□ -0.9
SYNPO-202ENST00000394243 F6UB75 175 aa9.45□□□□□ -0.9
SYNPO-202ENST00000394243 LTAP01374 205 aa9.44□□□□□ -0.9
SYNPO-202ENST00000394243 IGLV3-19P01714 112 aa9.44□□□□□ -0.9
SYNPO-202ENST00000394243 NKAPP1Q8N9T2 125 aa9.44□□□□□ -0.9
SYNPO-202ENST00000394243 H3BRN7 92 aa9.44□□□□□ -0.9
SYNPO-202ENST00000394243 CSRP2Q16527 193 aa9.44□□□□□ -0.9
SYNPO-202ENST00000394243 XIRP1Q702N8 1843 aaKnown RBP9.44□□□□□ -0.9
SYNPO-202ENST00000394243 TRAV12-2A0A075B6T6 113 aa9.44□□□□□ -0.9
SYNPO-202ENST00000394243 HERVK_113P63121 156 aa9.44□□□□□ -0.9
SYNPO-202ENST00000394243 HERV-K104P63124 156 aa9.44□□□□□ -0.9
SYNPO-202ENST00000394243 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.44□□□□□ -0.9
SYNPO-202ENST00000394243 LINC01545Q5VT33 79 aa9.44□□□□□ -0.9
SYNPO-202ENST00000394243 PLXND1Q9Y4D7 1925 aa9.44□□□□□ -0.9
SYNPO-202ENST00000394243 EP300Q09472 2414 aaPredicted RBP9.43□□□□□ -0.9
SYNPO-202ENST00000394243 SVIPQ8NHG7 77 aa9.43□□□□□ -0.9
SYNPO-202ENST00000394243 IGHV1OR15-1A0A075B7D0 117 aa9.43□□□□□ -0.9
SYNPO-202ENST00000394243 FOXL2NBQ6ZUU3 175 aa9.43□□□□□ -0.9
SYNPO-202ENST00000394243 CACNA1EQ15878 2313 aa9.43□□□□□ -0.9
SYNPO-202ENST00000394243 IL15RAQ13261 267 aa9.43□□□□□ -0.9
SYNPO-202ENST00000394243 THAP8Q8NA92 274 aa9.43□□□□□ -0.9
SYNPO-202ENST00000394243 XCL2Q9UBD3 114 aa9.43□□□□□ -0.9
SYNPO-202ENST00000394243 PSCAO43653 123 aa9.43□□□□□ -0.9
SYNPO-202ENST00000394243 PSMB8P28062 276 aa9.43□□□□□ -0.9
SYNPO-202ENST00000394243 Q8NFD4 153 aa9.43□□□□□ -0.9
SYNPO-202ENST00000394243 RNF183Q96D59 192 aa9.43□□□□□ -0.9
SYNPO-202ENST00000394243 ICOSQ9Y6W8 199 aa9.43□□□□□ -0.9
SYNPO-202ENST00000394243 DENND4AQ7Z401 1863 aa9.42□□□□□ -0.9
SYNPO-202ENST00000394243 WFDC9Q8NEX5 89 aa9.42□□□□□ -0.9
SYNPO-202ENST00000394243 GATA1P15976 413 aaPredicted RBP9.42□□□□□ -0.9
SYNPO-202ENST00000394243 DAD1P61803 113 aa9.42□□□□□ -0.9
SYNPO-202ENST00000394243 THADAQ6YHU6 1953 aa9.42□□□□□ -0.9
SYNPO-202ENST00000394243 E9PQ18 207 aa9.42□□□□□ -0.9
SYNPO-202ENST00000394243 ZGRF1Q86YA3 2104 aa9.42□□□□□ -0.9
SYNPO-202ENST00000394243 COL5A3P25940 1745 aaPredicted RBP9.42□□□□□ -0.9
SYNPO-202ENST00000394243 A4D1N5 150 aa9.42□□□□□ -0.9
SYNPO-202ENST00000394243 MUSTN1Q8IVN3 82 aa9.42□□□□□ -0.9
SYNPO-202ENST00000394243 Q9H8V8 135 aa9.42□□□□□ -0.9
SYNPO-202ENST00000394243 GREB1LQ9C091 1923 aaPredicted RBP9.42□□□□□ -0.9
SYNPO-202ENST00000394243 WT1-ASQ06250 92 aa9.41□□□□□ -0.9
SYNPO-202ENST00000394243 HELZP42694 1942 aaKnown RBP9.41□□□□□ -0.9
SYNPO-202ENST00000394243 UBE2DNLQ8IWF7 75 aa9.41□□□□□ -0.9
SYNPO-202ENST00000394243 C17orf77Q96MU5 243 aa9.41□□□□□ -0.9
SYNPO-202ENST00000394243 KLHL30-AS1Q8NEE0 82 aa9.41□□□□□ -0.9
SYNPO-202ENST00000394243 ATP6V0E1O15342 81 aa9.41□□□□□ -0.9
SYNPO-202ENST00000394243 LINC01620Q4KN68 170 aa9.41□□□□□ -0.9
SYNPO-202ENST00000394243 K7EM74 188 aa9.41□□□□□ -0.9
SYNPO-202ENST00000394243 NDUFS5O43920 106 aa9.41□□□□□ -0.9
SYNPO-202ENST00000394243 LMO1P25800 156 aa9.41□□□□□ -0.9
SYNPO-202ENST00000394243 ZNF833PQ6ZTB9 187 aa9.41□□□□□ -0.9
SYNPO-202ENST00000394243 DUX4L9Q6RFH8 374 aaPredicted RBP9.41□□□□□ -0.9
SYNPO-202ENST00000394243 GVINP1Q7Z2Y8 2422 aa9.4□□□□□ -0.9
SYNPO-202ENST00000394243 NRXN2Q9P2S2 1712 aa9.4□□□□□ -0.9
SYNPO-202ENST00000394243 COL11A2P13942 1736 aaPredicted RBP9.4□□□□□ -0.9
SYNPO-202ENST00000394243 COL8A2P25067 703 aa9.4□□□□□ -0.9
SYNPO-202ENST00000394243 B3GALT5-AS1P59052 145 aa9.4□□□□□ -0.9
SYNPO-202ENST00000394243 DEFB105AQ8NG35 78 aa9.4□□□□□ -0.9
SYNPO-202ENST00000394243 CACNA1GO43497 2377 aa9.4□□□□□ -0.91
SYNPO-202ENST00000394243 PKDREJQ9NTG1 2253 aa9.4□□□□□ -0.91
SYNPO-202ENST00000394243 COL4A5P29400 1685 aa9.4□□□□□ -0.91
SYNPO-202ENST00000394243 SAA4P35542 130 aa9.4□□□□□ -0.91
SYNPO-202ENST00000394243 PRR20EP86478 221 aa9.4□□□□□ -0.91
SYNPO-202ENST00000394243 PRR20CP86479 221 aa9.4□□□□□ -0.91
SYNPO-202ENST00000394243 PRR20DP86480 221 aa9.4□□□□□ -0.91
SYNPO-202ENST00000394243 PRR20BP86481 221 aa9.4□□□□□ -0.91
SYNPO-202ENST00000394243 PRR20AP86496 221 aa9.4□□□□□ -0.91
SYNPO-202ENST00000394243 TTTY13Q9BZ97 58 aa9.4□□□□□ -0.91
SYNPO-202ENST00000394243 TPSG1Q9NRR2 321 aa9.39□□□□□ -0.91
SYNPO-202ENST00000394243 PLA2G2EQ9NZK7 142 aa9.39□□□□□ -0.91
SYNPO-202ENST00000394243 FAM110DQ8TAY7 271 aaPredicted RBP9.39□□□□□ -0.91
SYNPO-202ENST00000394243 ZNF883P0CG24 379 aa9.39□□□□□ -0.91
SYNPO-202ENST00000394243 C17orf58Q2M2W7 97 aa9.39□□□□□ -0.91
SYNPO-202ENST00000394243 LY6HO94772 140 aa9.39□□□□□ -0.91
SYNPO-202ENST00000394243 ZFP36L1Q07352 338 aaKnown RBP9.38□□□□□ -0.91
SYNPO-202ENST00000394243 Q0VFX4 171 aa9.38□□□□□ -0.91
SYNPO-202ENST00000394243 CLPSL2Q6UWE3 100 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms