RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 TNFRSF6BO95407 300 aa11.45□□□□□ -0.58
VPS9D1-201ENST00000389386 TEN1Q86WV5 123 aa11.45□□□□□ -0.58
VPS9D1-201ENST00000389386 DEFB108BQ8NET1 73 aa11.45□□□□□ -0.58
VPS9D1-201ENST00000389386 MBD3L2Q8NHZ7 208 aaPredicted RBP11.45□□□□□ -0.58
VPS9D1-201ENST00000389386 CCL13Q99616 98 aa11.45□□□□□ -0.58
VPS9D1-201ENST00000389386 PSMB2P49721 201 aa11.45□□□□□ -0.58
VPS9D1-201ENST00000389386 DIAPH2-AS1Q14236 149 aa11.45□□□□□ -0.58
VPS9D1-201ENST00000389386 TEX29Q8N6K0 151 aa11.45□□□□□ -0.58
VPS9D1-201ENST00000389386 FAM216BQ8N7L0 139 aa11.45□□□□□ -0.58
VPS9D1-201ENST00000389386 RPEQ96AT9 228 aa11.45□□□□□ -0.58
VPS9D1-201ENST00000389386 MSRB1Q9NZV6 116 aa11.45□□□□□ -0.58
VPS9D1-201ENST00000389386 PKD1L2Q7Z442 2459 aa11.45□□□□□ -0.58
VPS9D1-201ENST00000389386 NCBP2LA6PVI3 153 aaKnown RBP11.44□□□□□ -0.58
VPS9D1-201ENST00000389386 PRR30Q53SZ7 412 aaPredicted RBP11.44□□□□□ -0.58
VPS9D1-201ENST00000389386 ZFP2Q6ZN57 461 aa11.44□□□□□ -0.58
VPS9D1-201ENST00000389386 APELAP0DMC3 54 aa11.44□□□□□ -0.58
VPS9D1-201ENST00000389386 LRBAP50851 2863 aa11.44□□□□□ -0.58
VPS9D1-201ENST00000389386 IGLC6P0CF74 106 aa11.44□□□□□ -0.58
VPS9D1-201ENST00000389386 EGR2P11161 476 aaPredicted RBP11.44□□□□□ -0.58
VPS9D1-201ENST00000389386 ZNF575Q86XF7 245 aa11.44□□□□□ -0.58
VPS9D1-201ENST00000389386 SHANK2-AS3Q9BTD1 123 aa11.44□□□□□ -0.58
VPS9D1-201ENST00000389386 TACC2O95359 2948 aa11.43□□□□□ -0.58
VPS9D1-201ENST00000389386 A0A087WX48 190 aa11.43□□□□□ -0.58
VPS9D1-201ENST00000389386 MYMXA0A1B0GTQ4 84 aa11.43□□□□□ -0.58
VPS9D1-201ENST00000389386 VMA21Q3ZAQ7 101 aa11.43□□□□□ -0.58
VPS9D1-201ENST00000389386 RAX2Q96IS3 184 aa11.43□□□□□ -0.58
VPS9D1-201ENST00000389386 ABCA4P78363 2273 aa11.43□□□□□ -0.58
VPS9D1-201ENST00000389386 LINC01549A6NIU2 74 aa11.43□□□□□ -0.58
VPS9D1-201ENST00000389386 ZNF688P0C7X2 276 aa11.43□□□□□ -0.58
VPS9D1-201ENST00000389386 GATA1P15976 413 aaPredicted RBP11.43□□□□□ -0.58
VPS9D1-201ENST00000389386 ATP5J2P56134 94 aa11.43□□□□□ -0.58
VPS9D1-201ENST00000389386 Q8N8P6 123 aa11.43□□□□□ -0.58
VPS9D1-201ENST00000389386 IGLV2-18A0A075B6J9 118 aa11.42□□□□□ -0.58
VPS9D1-201ENST00000389386 NDUFA3O95167 84 aa11.42□□□□□ -0.58
VPS9D1-201ENST00000389386 LOC107984156A0A0G2JMH3 177 aa11.42□□□□□ -0.58
VPS9D1-201ENST00000389386 PF4V1P10720 104 aa11.42□□□□□ -0.58
VPS9D1-201ENST00000389386 SRD5A1P18405 259 aa11.42□□□□□ -0.58
VPS9D1-201ENST00000389386 UBE2D3P61077 147 aa11.42□□□□□ -0.58
VPS9D1-201ENST00000389386 UBE2D2P62837 147 aa11.42□□□□□ -0.58
VPS9D1-201ENST00000389386 COX8CQ7Z4L0 72 aa11.42□□□□□ -0.58
VPS9D1-201ENST00000389386 ARL17AQ8IVW1 177 aa11.42□□□□□ -0.58
VPS9D1-201ENST00000389386 Q8NA96 180 aa11.42□□□□□ -0.58
VPS9D1-201ENST00000389386 RNF7Q9UBF6 113 aa11.42□□□□□ -0.58
VPS9D1-201ENST00000389386 RAI1Q7Z5J4 1906 aaPredicted RBP11.41□□□□□ -0.58
VPS9D1-201ENST00000389386 MRPS12O15235 138 aaKnown RBP11.41□□□□□ -0.58
VPS9D1-201ENST00000389386 PLNP26678 52 aa11.41□□□□□ -0.58
VPS9D1-201ENST00000389386 SFTA2Q6UW10 78 aa11.41□□□□□ -0.58
VPS9D1-201ENST00000389386 SBSPONQ8IVN8 264 aa11.41□□□□□ -0.58
VPS9D1-201ENST00000389386 MYOZ3Q8TDC0 251 aa11.41□□□□□ -0.58
VPS9D1-201ENST00000389386 H3BRN7 92 aa11.41□□□□□ -0.58
VPS9D1-201ENST00000389386 IGKV1-17P01599 117 aa11.41□□□□□ -0.58
VPS9D1-201ENST00000389386 RHODO00212 210 aa11.4□□□□□ -0.58
VPS9D1-201ENST00000389386 RPL27AP46776 148 aaKnown RBP11.4□□□□□ -0.58
VPS9D1-201ENST00000389386 UBE2D1P51668 147 aa11.4□□□□□ -0.58
VPS9D1-201ENST00000389386 ANXA2RQ3ZCQ2 193 aa11.4□□□□□ -0.58
VPS9D1-201ENST00000389386 KIR2DL4Q99706 377 aa11.4□□□□□ -0.58
VPS9D1-201ENST00000389386 TMEM262E9PQX1 116 aa11.4□□□□□ -0.58
VPS9D1-201ENST00000389386 LGALS1P09382 135 aaKnown RBP11.4□□□□□ -0.58
VPS9D1-201ENST00000389386 RASL11BQ9BPW5 248 aa11.4□□□□□ -0.58
VPS9D1-201ENST00000389386 CNFNQ9BYD5 112 aa11.4□□□□□ -0.58
VPS9D1-201ENST00000389386 CCL3L1P16619 93 aa11.39□□□□□ -0.59
VPS9D1-201ENST00000389386 ZNF80P51504 273 aaPredicted RBP11.39□□□□□ -0.59
VPS9D1-201ENST00000389386 PSMG3-AS1Q96PY0 264 aa11.39□□□□□ -0.59
VPS9D1-201ENST00000389386 GAGE12JA6NER3 117 aa11.39□□□□□ -0.59
VPS9D1-201ENST00000389386 GAGE7O76087 117 aa11.39□□□□□ -0.59
VPS9D1-201ENST00000389386 GAGE12FP0CL80 117 aa11.39□□□□□ -0.59
VPS9D1-201ENST00000389386 GAGE12GP0CL81 117 aa11.39□□□□□ -0.59
VPS9D1-201ENST00000389386 GAGE12IP0CL82 117 aa11.39□□□□□ -0.59
VPS9D1-201ENST00000389386 GATA4P43694 442 aa11.39□□□□□ -0.59
VPS9D1-201ENST00000389386 GAGE4Q13068 117 aa11.39□□□□□ -0.59
VPS9D1-201ENST00000389386 PRR25Q96S07 402 aa11.39□□□□□ -0.59
VPS9D1-201ENST00000389386 SPXQ9BT56 116 aa11.39□□□□□ -0.59
VPS9D1-201ENST00000389386 A8MWV9 139 aa11.38□□□□□ -0.59
VPS9D1-201ENST00000389386 NDUFV3P56181 108 aaKnown RBP11.38□□□□□ -0.59
VPS9D1-201ENST00000389386 PLGLAQ15195 96 aa11.38□□□□□ -0.59
VPS9D1-201ENST00000389386 RAB1BQ9H0U4 201 aa11.38□□□□□ -0.59
VPS9D1-201ENST00000389386 COL12A1Q99715 3063 aa11.38□□□□□ -0.59
VPS9D1-201ENST00000389386 CCDC179H3BU77 68 aa11.37□□□□□ -0.59
VPS9D1-201ENST00000389386 I3L2K1 104 aa11.37□□□□□ -0.59
VPS9D1-201ENST00000389386 AJUBAQ96IF1 538 aa11.37□□□□□ -0.59
VPS9D1-201ENST00000389386 DCHS2Q6V1P9 2916 aa11.37□□□□□ -0.59
VPS9D1-201ENST00000389386 IGKV2-40A0A087WW87 121 aaPredicted RBP11.37□□□□□ -0.59
VPS9D1-201ENST00000389386 A0A0G2JNJ9 132 aa11.37□□□□□ -0.59
VPS9D1-201ENST00000389386 TCL1BO95988 128 aa11.37□□□□□ -0.59
VPS9D1-201ENST00000389386 IGKV2D-40P01614 121 aaPredicted RBP11.37□□□□□ -0.59
VPS9D1-201ENST00000389386 CD40P25942 277 aa11.37□□□□□ -0.59
VPS9D1-201ENST00000389386 GLRXP35754 106 aa11.37□□□□□ -0.59
VPS9D1-201ENST00000389386 CCL8P80075 99 aa11.37□□□□□ -0.59
VPS9D1-201ENST00000389386 LAGE3Q14657 143 aa11.37□□□□□ -0.59
VPS9D1-201ENST00000389386 TMEM78Q5T7P6 136 aa11.37□□□□□ -0.59
VPS9D1-201ENST00000389386 DTX2Q86UW9 622 aa11.37□□□□□ -0.59
VPS9D1-201ENST00000389386 FAM57AQ8TBR7 257 aa11.37□□□□□ -0.59
VPS9D1-201ENST00000389386 AAMDCQ9H7C9 122 aa11.37□□□□□ -0.59
VPS9D1-201ENST00000389386 Q9UFV3 132 aa11.37□□□□□ -0.59
VPS9D1-201ENST00000389386 CACNA1BQ00975 2339 aa11.37□□□□□ -0.59
VPS9D1-201ENST00000389386 ZFYVE26Q68DK2 2539 aa11.37□□□□□ -0.59
VPS9D1-201ENST00000389386 H7C1H1 209 aa11.37□□□□□ -0.59
VPS9D1-201ENST00000389386 ENSAO43768 121 aaKnown RBP11.37□□□□□ -0.59
VPS9D1-201ENST00000389386 ANKRD29Q8N6D5 301 aa11.37□□□□□ -0.59
VPS9D1-201ENST00000389386 FBXL15Q9H469 300 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms