RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 C5orf17Q8NAS9 161 aa9.58□□□□□ -0.88
CIITA-202ENST00000381835 C19orf71A6NCJ1 209 aa9.57□□□□□ -0.88
CIITA-202ENST00000381835 CRXO43186 299 aaPredicted RBP9.57□□□□□ -0.88
CIITA-202ENST00000381835 SCGB2A1O75556 95 aa9.57□□□□□ -0.88
CIITA-202ENST00000381835 BRI3O95415 125 aa9.57□□□□□ -0.88
CIITA-202ENST00000381835 LTAP01374 205 aa9.57□□□□□ -0.88
CIITA-202ENST00000381835 RBPMS2Q6ZRY4 209 aaKnown RBP9.57□□□□□ -0.88
CIITA-202ENST00000381835 USMG5Q96IX5 58 aa9.57□□□□□ -0.88
CIITA-202ENST00000381835 Q9H3A6 140 aa9.57□□□□□ -0.88
CIITA-202ENST00000381835 ST20Q9HBF5 79 aa9.57□□□□□ -0.88
CIITA-202ENST00000381835 CHEK1O14757 476 aa9.57□□□□□ -0.88
CIITA-202ENST00000381835 TCRAP04437 139 aa9.57□□□□□ -0.88
CIITA-202ENST00000381835 IL4P05112 153 aa9.57□□□□□ -0.88
CIITA-202ENST00000381835 LINC00173Q6ZV60 143 aa9.57□□□□□ -0.88
CIITA-202ENST00000381835 ZNF492Q9P255 531 aa9.57□□□□□ -0.88
CIITA-202ENST00000381835 NIPBLQ6KC79 2804 aaeCLIP9.57□□□□□ -0.88
CIITA-202ENST00000381835 A0A0G2JLM5 398 aa9.56□□□□□ -0.88
CIITA-202ENST00000381835 hDV102S1A0JD36 115 aa9.56□□□□□ -0.88
CIITA-202ENST00000381835 JMJD8Q96S16 334 aa9.56□□□□□ -0.88
CIITA-202ENST00000381835 GFRA4Q9GZZ7 299 aa9.56□□□□□ -0.88
CIITA-202ENST00000381835 TP73-AS1Q9UF72 201 aa9.56□□□□□ -0.88
CIITA-202ENST00000381835 TEP1Q99973 2627 aaKnown RBP9.56□□□□□ -0.88
CIITA-202ENST00000381835 IGHV3OR16-8A0A075B7F1 116 aa9.56□□□□□ -0.88
CIITA-202ENST00000381835 GP9P14770 177 aa9.56□□□□□ -0.88
CIITA-202ENST00000381835 ZNF491Q8N8L2 437 aa9.56□□□□□ -0.88
CIITA-202ENST00000381835 TMEM191AQ9H0A3 160 aa9.56□□□□□ -0.88
CIITA-202ENST00000381835 CRLF1O75462 422 aa9.55□□□□□ -0.88
CIITA-202ENST00000381835 TRBV12-3P01733 135 aa9.55□□□□□ -0.88
CIITA-202ENST00000381835 SRSF2Q01130 221 aaKnown RBP9.55□□□□□ -0.88
CIITA-202ENST00000381835 MPV17L2Q567V2 206 aa9.55□□□□□ -0.88
CIITA-202ENST00000381835 OR4C5Q8NGB2 326 aa9.55□□□□□ -0.88
CIITA-202ENST00000381835 OR4X2Q8NGF9 303 aa9.55□□□□□ -0.88
CIITA-202ENST00000381835 RNF125Q96EQ8 232 aa9.55□□□□□ -0.88
CIITA-202ENST00000381835 NDFIP1Q9BT67 221 aa9.55□□□□□ -0.88
CIITA-202ENST00000381835 LOC102724200A0A096LPH7 203 aaPredicted RBP9.55□□□□□ -0.88
CIITA-202ENST00000381835 PLP1P60201 277 aa9.55□□□□□ -0.88
CIITA-202ENST00000381835 FOXE3Q13461 319 aa9.55□□□□□ -0.88
CIITA-202ENST00000381835 VAMP3Q15836 100 aa9.55□□□□□ -0.88
CIITA-202ENST00000381835 MAP1LC3CQ9BXW4 147 aa9.55□□□□□ -0.88
CIITA-202ENST00000381835 HIGD1AQ9Y241 93 aa9.55□□□□□ -0.88
CIITA-202ENST00000381835 JMJD1CQ15652 2540 aa9.54□□□□□ -0.88
CIITA-202ENST00000381835 TMEM89A2RUT3 159 aa9.54□□□□□ -0.88
CIITA-202ENST00000381835 ELANEP08246 267 aa9.54□□□□□ -0.88
CIITA-202ENST00000381835 OR5AL1P0C617 328 aa9.54□□□□□ -0.88
CIITA-202ENST00000381835 ARL3P36405 182 aa9.54□□□□□ -0.88
CIITA-202ENST00000381835 ZNF138P52744 262 aa9.54□□□□□ -0.88
CIITA-202ENST00000381835 SLC25A34Q6PIV7 304 aa9.54□□□□□ -0.88
CIITA-202ENST00000381835 C2CD3Q4AC94 2353 aa9.54□□□□□ -0.88
CIITA-202ENST00000381835 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.54□□□□□ -0.88
CIITA-202ENST00000381835 TRAV8-1A0A0A6YYK1 113 aa9.54□□□□□ -0.88
CIITA-202ENST00000381835 WI2-2373I1.2A0A1W2PRP0 233 aa9.54□□□□□ -0.88
CIITA-202ENST00000381835 FAM231BA6NCW3 169 aa9.54□□□□□ -0.88
CIITA-202ENST00000381835 H0Y8G0 127 aa9.54□□□□□ -0.88
CIITA-202ENST00000381835 NUDT3O95989 172 aa9.54□□□□□ -0.88
CIITA-202ENST00000381835 Q86TA4 180 aa9.54□□□□□ -0.88
CIITA-202ENST00000381835 NPIPB6E9PJ23 425 aa9.53□□□□□ -0.88
CIITA-202ENST00000381835 PRNTQ86SH4 94 aa9.53□□□□□ -0.88
CIITA-202ENST00000381835 ATP6V0BQ99437 205 aa9.53□□□□□ -0.88
CIITA-202ENST00000381835 TIMM8BQ9Y5J9 83 aaPredicted RBP9.53□□□□□ -0.88
CIITA-202ENST00000381835 HAX1O00165 279 aa9.53□□□□□ -0.88
CIITA-202ENST00000381835 CSN3P07498 182 aa9.53□□□□□ -0.88
CIITA-202ENST00000381835 PET117Q6UWS5 81 aa9.53□□□□□ -0.88
CIITA-202ENST00000381835 GOLT1AQ6ZVE7 132 aa9.53□□□□□ -0.88
CIITA-202ENST00000381835 ERASQ7Z444 233 aa9.53□□□□□ -0.88
CIITA-202ENST00000381835 ZNF414Q96IQ9 312 aa9.53□□□□□ -0.88
CIITA-202ENST00000381835 MCRIP2Q9BUT9 160 aaKnown RBP9.53□□□□□ -0.88
CIITA-202ENST00000381835 SLC25A39Q9BZJ4 359 aaPredicted RBP9.53□□□□□ -0.88
CIITA-202ENST00000381835 OTORQ9NRC9 128 aa9.53□□□□□ -0.88
CIITA-202ENST00000381835 MAST4O15021 2626 aa9.53□□□□□ -0.88
CIITA-202ENST00000381835 EXOC3-AS1Q8N2X6 119 aa9.52□□□□□ -0.89
CIITA-202ENST00000381835 LINC01006Q8NI28 216 aa9.52□□□□□ -0.89
CIITA-202ENST00000381835 CSTL1Q9H114 145 aa9.52□□□□□ -0.89
CIITA-202ENST00000381835 HSPB8Q9UJY1 196 aa9.52□□□□□ -0.89
CIITA-202ENST00000381835 KHDC1LQ5JSQ8 128 aa9.51□□□□□ -0.89
CIITA-202ENST00000381835 BVES-AS1Q5T3Y7 98 aa9.51□□□□□ -0.89
CIITA-202ENST00000381835 HIST2H2BDQ6DRA6 164 aa9.51□□□□□ -0.89
CIITA-202ENST00000381835 SCRT2Q9NQ03 307 aa9.51□□□□□ -0.89
CIITA-202ENST00000381835 PEF1Q9UBV8 284 aaKnown RBP9.51□□□□□ -0.89
CIITA-202ENST00000381835 CBY3A6NI87 242 aa9.51□□□□□ -0.89
CIITA-202ENST00000381835 C12orf54Q6X4T0 127 aa9.51□□□□□ -0.89
CIITA-202ENST00000381835 RNF152Q8N8N0 203 aa9.51□□□□□ -0.89
CIITA-202ENST00000381835 C11orf44Q8N8P7 122 aa9.51□□□□□ -0.89
CIITA-202ENST00000381835 ZFAND3Q9H8U3 227 aa9.51□□□□□ -0.89
CIITA-202ENST00000381835 TAX1BP3O14907 124 aa9.5□□□□□ -0.89
CIITA-202ENST00000381835 ZNF207O43670 478 aaKnown RBP9.5□□□□□ -0.89
CIITA-202ENST00000381835 APOHP02749 345 aaPredicted RBP9.5□□□□□ -0.89
CIITA-202ENST00000381835 TCTEX1D4Q5JR98 221 aa9.5□□□□□ -0.89
CIITA-202ENST00000381835 MYOZ3Q8TDC0 251 aa9.5□□□□□ -0.89
CIITA-202ENST00000381835 UBE2E2Q96LR5 201 aa9.5□□□□□ -0.89
CIITA-202ENST00000381835 C16orf95Q9H693 158 aa9.5□□□□□ -0.89
CIITA-202ENST00000381835 RABAC1Q9UI14 185 aa9.5□□□□□ -0.89
CIITA-202ENST00000381835 MUC21A0A0G2JKD1 596 aa9.5□□□□□ -0.89
CIITA-202ENST00000381835 MUC21A0A140T8X8 626 aa9.5□□□□□ -0.89
CIITA-202ENST00000381835 A0A1B0GUT8 65 aa9.5□□□□□ -0.89
CIITA-202ENST00000381835 H3BRN7 92 aa9.5□□□□□ -0.89
CIITA-202ENST00000381835 IGLV2-11P01706 119 aa9.5□□□□□ -0.89
CIITA-202ENST00000381835 MUC21Q5SSG8 566 aa9.5□□□□□ -0.89
CIITA-202ENST00000381835 PMCHL2Q9BQD1 86 aa9.5□□□□□ -0.89
CIITA-202ENST00000381835 SHANK2-AS3Q9BTD1 123 aa9.5□□□□□ -0.89
CIITA-202ENST00000381835 MS4A6AQ9H2W1 248 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms