RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 SSC4DQ8WTU2 575 aa9.37□□□□□ -0.91
COL9A1-202ENST00000357250 MRPL53Q96EL3 112 aaKnown RBP9.37□□□□□ -0.91
COL9A1-202ENST00000357250 ANKRD11Q6UB99 2663 aaPredicted RBP9.37□□□□□ -0.91
COL9A1-202ENST00000357250 IGHV1OR15-1A0A075B7D0 117 aa9.37□□□□□ -0.91
COL9A1-202ENST00000357250 A0A0U1RRA0 63 aa9.37□□□□□ -0.91
COL9A1-202ENST00000357250 I3L3M4 83 aa9.37□□□□□ -0.91
COL9A1-202ENST00000357250 HAPLN4Q86UW8 402 aa9.37□□□□□ -0.91
COL9A1-202ENST00000357250 PRSS33Q8NF86 280 aa9.37□□□□□ -0.91
COL9A1-202ENST00000357250 FAM215AQ9Y5M1 114 aa9.37□□□□□ -0.91
COL9A1-202ENST00000357250 TMEM213A2RRL7 107 aa9.36□□□□□ -0.91
COL9A1-202ENST00000357250 TAL2Q16559 108 aa9.36□□□□□ -0.91
COL9A1-202ENST00000357250 OR11H6Q8NGC7 330 aa9.36□□□□□ -0.91
COL9A1-202ENST00000357250 C20orf78Q9BR46 151 aa9.36□□□□□ -0.91
COL9A1-202ENST00000357250 ELANEP08246 267 aa9.36□□□□□ -0.91
COL9A1-202ENST00000357250 IGLC2P0DOY2 106 aa9.36□□□□□ -0.91
COL9A1-202ENST00000357250 IGLC3P0DOY3 106 aa9.36□□□□□ -0.91
COL9A1-202ENST00000357250 PIP4P1Q86T03 277 aa9.36□□□□□ -0.91
COL9A1-202ENST00000357250 GATD1Q8NB37 220 aa9.36□□□□□ -0.91
COL9A1-202ENST00000357250 CHD7Q9P2D1 2997 aa9.36□□□□□ -0.91
COL9A1-202ENST00000357250 A0A087WWL8 130 aa9.36□□□□□ -0.91
COL9A1-202ENST00000357250 IGHV3-73A0A0B4J1V6 119 aa9.36□□□□□ -0.91
COL9A1-202ENST00000357250 FXYD5Q96DB9 178 aa9.36□□□□□ -0.91
COL9A1-202ENST00000357250 ABCA2Q9BZC7 2435 aa9.36□□□□□ -0.91
COL9A1-202ENST00000357250 IGF2-ASQ6U949 168 aa9.36□□□□□ -0.91
COL9A1-202ENST00000357250 WIPF2Q8TF74 440 aaPredicted RBP9.36□□□□□ -0.91
COL9A1-202ENST00000357250 TP53TG1Q9Y2A0 90 aa9.36□□□□□ -0.91
COL9A1-202ENST00000357250 IGHV1-24A0A0C4DH33 117 aa9.35□□□□□ -0.91
COL9A1-202ENST00000357250 GAGE12BA1L429 117 aa9.35□□□□□ -0.91
COL9A1-202ENST00000357250 MRPL51Q4U2R6 128 aaKnown RBP9.35□□□□□ -0.91
COL9A1-202ENST00000357250 CDKN1BP46527 198 aa9.35□□□□□ -0.91
COL9A1-202ENST00000357250 ZNF134P52741 427 aa9.35□□□□□ -0.91
COL9A1-202ENST00000357250 SPXQ9BT56 116 aa9.35□□□□□ -0.91
COL9A1-202ENST00000357250 WIPF3A6NGB9 483 aa9.35□□□□□ -0.91
COL9A1-202ENST00000357250 FXYD7P58549 80 aa9.35□□□□□ -0.91
COL9A1-202ENST00000357250 IGFL2Q6UWQ7 119 aa9.35□□□□□ -0.91
COL9A1-202ENST00000357250 INAFM2P0DMQ5 153 aa9.34□□□□□ -0.91
COL9A1-202ENST00000357250 KRTAP27-1Q3LI81 207 aa9.34□□□□□ -0.91
COL9A1-202ENST00000357250 DUX4L9Q6RFH8 374 aaPredicted RBP9.34□□□□□ -0.91
COL9A1-202ENST00000357250 RBAKDNA6NC62 111 aa9.34□□□□□ -0.91
COL9A1-202ENST00000357250 COX8AP10176 69 aa9.34□□□□□ -0.91
COL9A1-202ENST00000357250 SMIM2Q9BVW6 85 aa9.34□□□□□ -0.91
COL9A1-202ENST00000357250 SIVA1O15304 175 aa9.34□□□□□ -0.91
COL9A1-202ENST00000357250 RPL35AP18077 110 aaKnown RBP9.34□□□□□ -0.91
COL9A1-202ENST00000357250 C8orf49Q96NF6 230 aa9.34□□□□□ -0.91
COL9A1-202ENST00000357250 TRAV13-1A0A0B4J241 112 aa9.33□□□□□ -0.92
COL9A1-202ENST00000357250 SDHAF1A6NFY7 115 aa9.33□□□□□ -0.92
COL9A1-202ENST00000357250 DKK1O94907 266 aa9.33□□□□□ -0.92
COL9A1-202ENST00000357250 RIPPLY3P57055 190 aa9.33□□□□□ -0.92
COL9A1-202ENST00000357250 ATP6V0BQ99437 205 aa9.33□□□□□ -0.92
COL9A1-202ENST00000357250 KLF12Q9Y4X4 402 aa9.33□□□□□ -0.92
COL9A1-202ENST00000357250 SLAQ13239 276 aa9.33□□□□□ -0.92
COL9A1-202ENST00000357250 UBE2E2Q96LR5 201 aa9.33□□□□□ -0.92
COL9A1-202ENST00000357250 WNK1Q9H4A3 2382 aa9.33□□□□□ -0.92
COL9A1-202ENST00000357250 TRBV25-1A0A075B6N4 114 aa9.33□□□□□ -0.92
COL9A1-202ENST00000357250 LTAP01374 205 aa9.33□□□□□ -0.92
COL9A1-202ENST00000357250 TCF15Q12870 199 aa9.33□□□□□ -0.92
COL9A1-202ENST00000357250 STPG4Q8N801 248 aa9.33□□□□□ -0.92
COL9A1-202ENST00000357250 SELENOKQ9Y6D0 94 aa9.33□□□□□ -0.92
COL9A1-202ENST00000357250 F8VRH5 84 aa9.33□□□□□ -0.92
COL9A1-202ENST00000357250 ZNF491Q8N8L2 437 aa9.33□□□□□ -0.92
COL9A1-202ENST00000357250 G3V318 75 aa9.32□□□□□ -0.92
COL9A1-202ENST00000357250 IGHV3-53P01767 116 aa9.32□□□□□ -0.92
COL9A1-202ENST00000357250 HLA-DRB4P13762 266 aa9.32□□□□□ -0.92
COL9A1-202ENST00000357250 SP5Q6BEB4 398 aaPredicted RBP9.32□□□□□ -0.92
COL9A1-202ENST00000357250 LAMTOR3Q9UHA4 124 aa9.32□□□□□ -0.92
COL9A1-202ENST00000357250 HLA-DRB4X5D2U9 266 aa9.32□□□□□ -0.92
COL9A1-202ENST00000357250 RUSC1-AS1Q66K80 236 aa9.32□□□□□ -0.92
COL9A1-202ENST00000357250 ZNF114Q8NC26 417 aa9.32□□□□□ -0.92
COL9A1-202ENST00000357250 IGHV7-4-1A0A0J9YVY3 117 aa9.32□□□□□ -0.92
COL9A1-202ENST00000357250 COA6Q5JTJ3 125 aaKnown RBP9.32□□□□□ -0.92
COL9A1-202ENST00000357250 Q6ZWC4 215 aa9.32□□□□□ -0.92
COL9A1-202ENST00000357250 MYO9AB2RTY4 2548 aa9.32□□□□□ -0.92
COL9A1-202ENST00000357250 C9orf118A6NHY6 69 aa9.32□□□□□ -0.92
COL9A1-202ENST00000357250 EREGO14944 169 aa9.32□□□□□ -0.92
COL9A1-202ENST00000357250 IGHV2-70P01814 119 aa9.32□□□□□ -0.92
COL9A1-202ENST00000357250 NBL1P41271 181 aa9.32□□□□□ -0.92
COL9A1-202ENST00000357250 NAA38Q9BRA0 125 aaKnown RBP9.32□□□□□ -0.92
COL9A1-202ENST00000357250 IGLC7A0M8Q6 106 aa9.31□□□□□ -0.92
COL9A1-202ENST00000357250 KLF5Q13887 457 aaPredicted RBP9.31□□□□□ -0.92
COL9A1-202ENST00000357250 PRSS57Q6UWY2 283 aa9.31□□□□□ -0.92
COL9A1-202ENST00000357250 C11orf53Q8IXP5 236 aa9.31□□□□□ -0.92
COL9A1-202ENST00000357250 SIGLEC8Q9NYZ4 499 aa9.31□□□□□ -0.92
COL9A1-202ENST00000357250 F8WEM9 126 aa9.31□□□□□ -0.92
COL9A1-202ENST00000357250 SPINK13Q1W4C9 94 aa9.31□□□□□ -0.92
COL9A1-202ENST00000357250 ANXA2RQ3ZCQ2 193 aa9.31□□□□□ -0.92
COL9A1-202ENST00000357250 Q5PR19 223 aa9.31□□□□□ -0.92
COL9A1-202ENST00000357250 ZNF493Q6ZR52 646 aa9.31□□□□□ -0.92
COL9A1-202ENST00000357250 ZC2HC1AQ96GY0 325 aa9.31□□□□□ -0.92
COL9A1-202ENST00000357250 PRO3102Q9H379 93 aa9.31□□□□□ -0.92
COL9A1-202ENST00000357250 DENND4AQ7Z401 1863 aa9.31□□□□□ -0.92
COL9A1-202ENST00000357250 TLN2Q9Y4G6 2542 aa9.31□□□□□ -0.92
COL9A1-202ENST00000357250 RNF223E7ERA6 249 aa9.31□□□□□ -0.92
COL9A1-202ENST00000357250 ADAMTSL5Q6ZMM2 481 aa9.31□□□□□ -0.92
COL9A1-202ENST00000357250 LYPD6Q86Y78 171 aa9.31□□□□□ -0.92
COL9A1-202ENST00000357250 SLX1AQ9BQ83 275 aa9.31□□□□□ -0.92
COL9A1-202ENST00000357250 LHBP01229 141 aa9.3□□□□□ -0.92
COL9A1-202ENST00000357250 TCTEX1D4Q5JR98 221 aa9.3□□□□□ -0.92
COL9A1-202ENST00000357250 MCRIP2Q9BUT9 160 aaKnown RBP9.3□□□□□ -0.92
COL9A1-202ENST00000357250 SNHG12Q9BXW3 62 aa9.3□□□□□ -0.92
COL9A1-202ENST00000357250 C9JAW5 83 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms