RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 TRAV13-1A0A0B4J241 112 aa11.69□□□□□ -0.54
COL17A1-201ENST00000353479 I3L2K1 104 aa11.69□□□□□ -0.54
COL17A1-201ENST00000353479 SIRPDQ9H106 197 aa11.69□□□□□ -0.54
COL17A1-201ENST00000353479 ZC2HC1AQ96GY0 325 aa11.69□□□□□ -0.54
COL17A1-201ENST00000353479 K7EIM0 57 aa11.68□□□□□ -0.54
COL17A1-201ENST00000353479 LINC00158P58513 81 aa11.68□□□□□ -0.54
COL17A1-201ENST00000353479 C5orf30Q96GV9 206 aa11.68□□□□□ -0.54
COL17A1-201ENST00000353479 PTPN13Q12923 2485 aa11.68□□□□□ -0.54
COL17A1-201ENST00000353479 IGLV11-55A0A075B6I3 123 aa11.68□□□□□ -0.54
COL17A1-201ENST00000353479 AJUBAQ96IF1 538 aa11.68□□□□□ -0.54
COL17A1-201ENST00000353479 RHODO00212 210 aa11.68□□□□□ -0.54
COL17A1-201ENST00000353479 ZNF114Q8NC26 417 aa11.68□□□□□ -0.54
COL17A1-201ENST00000353479 LINC01559Q495D7 138 aa11.68□□□□□ -0.54
COL17A1-201ENST00000353479 CT83Q5H943 113 aa11.68□□□□□ -0.54
COL17A1-201ENST00000353479 ODF3L1Q8IXM7 274 aa11.68□□□□□ -0.54
COL17A1-201ENST00000353479 PCNX3Q9H6A9 2034 aa11.68□□□□□ -0.54
COL17A1-201ENST00000353479 K7ERU9 68 aa11.67□□□□□ -0.54
COL17A1-201ENST00000353479 IGF2RP11717 2491 aa11.67□□□□□ -0.54
COL17A1-201ENST00000353479 FAM231BA6NCW3 169 aa11.67□□□□□ -0.54
COL17A1-201ENST00000353479 VWC2Q2TAL6 325 aa11.67□□□□□ -0.54
COL17A1-201ENST00000353479 BCL6BQ8N143 479 aaPredicted RBP11.67□□□□□ -0.54
COL17A1-201ENST00000353479 IGLV2-23P01705 113 aa11.67□□□□□ -0.54
COL17A1-201ENST00000353479 SFTA2Q6UW10 78 aa11.67□□□□□ -0.54
COL17A1-201ENST00000353479 NHP2Q9NX24 153 aaKnown RBP11.67□□□□□ -0.54
COL17A1-201ENST00000353479 PSCAO43653 123 aa11.67□□□□□ -0.54
COL17A1-201ENST00000353479 ATP6V0BQ99437 205 aa11.67□□□□□ -0.54
COL17A1-201ENST00000353479 LAMTOR2Q9Y2Q5 125 aa11.67□□□□□ -0.54
COL17A1-201ENST00000353479 ZNF843Q8N446 348 aa11.66□□□□□ -0.54
COL17A1-201ENST00000353479 PLNP26678 52 aa11.66□□□□□ -0.54
COL17A1-201ENST00000353479 DYNAPQ8N1N2 210 aa11.66□□□□□ -0.54
COL17A1-201ENST00000353479 FAM104BQ5XKR9 115 aa11.66□□□□□ -0.54
COL17A1-201ENST00000353479 A8MWV9 139 aa11.65□□□□□ -0.54
COL17A1-201ENST00000353479 TRAV26-2A0A0B4J265 109 aa11.65□□□□□ -0.54
COL17A1-201ENST00000353479 FOXI2Q6ZQN5 318 aa11.65□□□□□ -0.54
COL17A1-201ENST00000353479 V9GYV3 84 aa11.65□□□□□ -0.54
COL17A1-201ENST00000353479 IGLV2-14P01704 120 aa11.65□□□□□ -0.54
COL17A1-201ENST00000353479 CTSGP08311 255 aa11.65□□□□□ -0.54
COL17A1-201ENST00000353479 NPC2P61916 151 aa11.65□□□□□ -0.54
COL17A1-201ENST00000353479 MORN3Q6PF18 240 aaPredicted RBP11.65□□□□□ -0.55
COL17A1-201ENST00000353479 CSPG4Q6UVK1 2322 aa11.65□□□□□ -0.55
COL17A1-201ENST00000353479 DYSFO75923 2080 aa11.64□□□□□ -0.55
COL17A1-201ENST00000353479 EML6Q6ZMW3 1958 aa11.64□□□□□ -0.55
COL17A1-201ENST00000353479 MED12LQ86YW9 2145 aa11.64□□□□□ -0.55
COL17A1-201ENST00000353479 IGKV1-17P01599 117 aa11.64□□□□□ -0.55
COL17A1-201ENST00000353479 C3orf79P0CE67 100 aa11.64□□□□□ -0.55
COL17A1-201ENST00000353479 FAM231DQ6ZW35 169 aa11.64□□□□□ -0.55
COL17A1-201ENST00000353479 LMO4P61968 165 aa11.64□□□□□ -0.55
COL17A1-201ENST00000353479 APRG1Q8IVJ8 170 aa11.64□□□□□ -0.55
COL17A1-201ENST00000353479 A0A1B0GV90 55 aa11.64□□□□□ -0.55
COL17A1-201ENST00000353479 TYMSP04818 313 aa11.64□□□□□ -0.55
COL17A1-201ENST00000353479 SEC11AP67812 179 aa11.64□□□□□ -0.55
COL17A1-201ENST00000353479 AGPAT4-IT1Q9H0P7 198 aa11.64□□□□□ -0.55
COL17A1-201ENST00000353479 TMEM86BQ8N661 226 aa11.63□□□□□ -0.55
COL17A1-201ENST00000353479 C11orf52Q96A22 123 aa11.63□□□□□ -0.55
COL17A1-201ENST00000353479 RASL10AQ92737 203 aa11.63□□□□□ -0.55
COL17A1-201ENST00000353479 hDV102S1A0JD36 115 aa11.63□□□□□ -0.55
COL17A1-201ENST00000353479 TEX22C9J3V5 150 aa11.63□□□□□ -0.55
COL17A1-201ENST00000353479 MRAPQ8TCY5 172 aa11.63□□□□□ -0.55
COL17A1-201ENST00000353479 ZNRF2Q8NHG8 242 aa11.63□□□□□ -0.55
COL17A1-201ENST00000353479 IGHV4OR15-8A0A075B7B6 117 aa11.63□□□□□ -0.55
COL17A1-201ENST00000353479 A0A087WW49 117 aa11.63□□□□□ -0.55
COL17A1-201ENST00000353479 IGHV3-38A0A0C4DH36 116 aa11.63□□□□□ -0.55
COL17A1-201ENST00000353479 C6orf226Q5I0X4 101 aa11.62□□□□□ -0.55
COL17A1-201ENST00000353479 PRSS57Q6UWY2 283 aa11.62□□□□□ -0.55
COL17A1-201ENST00000353479 TP53TG1Q9Y2A0 90 aa11.62□□□□□ -0.55
COL17A1-201ENST00000353479 HIVEP2P31629 2446 aa11.62□□□□□ -0.55
COL17A1-201ENST00000353479 SYS1-DBNDD2H3BUS1 97 aa11.62□□□□□ -0.55
COL17A1-201ENST00000353479 SS18Q15532 418 aa11.62□□□□□ -0.55
COL17A1-201ENST00000353479 TNRC6AQ8NDV7 1962 aaKnown RBP11.62□□□□□ -0.55
COL17A1-201ENST00000353479 E7EUB6 86 aa11.62□□□□□ -0.55
COL17A1-201ENST00000353479 MRPL51Q4U2R6 128 aaKnown RBP11.62□□□□□ -0.55
COL17A1-201ENST00000353479 PLEKHB2Q96CS7 222 aa11.62□□□□□ -0.55
COL17A1-201ENST00000353479 PRR14LQ5THK1 2151 aa11.62□□□□□ -0.55
COL17A1-201ENST00000353479 LOXL1Q08397 574 aaPredicted RBP11.62□□□□□ -0.55
COL17A1-201ENST00000353479 H3BUT2 72 aa11.61□□□□□ -0.55
COL17A1-201ENST00000353479 LTAP01374 205 aa11.61□□□□□ -0.55
COL17A1-201ENST00000353479 SPXQ9BT56 116 aa11.61□□□□□ -0.55
COL17A1-201ENST00000353479 NUP210LQ5VU65 1888 aa11.61□□□□□ -0.55
COL17A1-201ENST00000353479 SMIM27A0A1W2PRY6 76 aa11.61□□□□□ -0.55
COL17A1-201ENST00000353479 HIST2H2BCQ6DN03 193 aa11.61□□□□□ -0.55
COL17A1-201ENST00000353479 A0A1B0GUS0 222 aa11.61□□□□□ -0.55
COL17A1-201ENST00000353479 SDHAF1A6NFY7 115 aa11.61□□□□□ -0.55
COL17A1-201ENST00000353479 I3L3M4 83 aa11.61□□□□□ -0.55
COL17A1-201ENST00000353479 C9orf66Q5T8R8 295 aa11.61□□□□□ -0.55
COL17A1-201ENST00000353479 SPCS1Q9Y6A9 102 aa11.61□□□□□ -0.55
COL17A1-201ENST00000353479 TRBV25-1A0A075B6N4 114 aa11.61□□□□□ -0.55
COL17A1-201ENST00000353479 C18orf32Q8TCD1 76 aa11.61□□□□□ -0.55
COL17A1-201ENST00000353479 KMT2EQ8IZD2 1858 aa11.6□□□□□ -0.55
COL17A1-201ENST00000353479 GNRH2O43555 120 aa11.6□□□□□ -0.55
COL17A1-201ENST00000353479 LY6G5BQ8NDX9 201 aa11.6□□□□□ -0.55
COL17A1-201ENST00000353479 MORN5Q5VZ52 161 aa11.6□□□□□ -0.55
COL17A1-201ENST00000353479 NEGR1Q7Z3B1 354 aa11.6□□□□□ -0.55
COL17A1-201ENST00000353479 SCGB1A1P11684 91 aa11.6□□□□□ -0.55
COL17A1-201ENST00000353479 PIEZO2Q9H5I5 2752 aa11.6□□□□□ -0.55
COL17A1-201ENST00000353479 A8MWP6 167 aa11.6□□□□□ -0.55
COL17A1-201ENST00000353479 TMEM238C9JI98 176 aa11.6□□□□□ -0.55
COL17A1-201ENST00000353479 SLC25A20O43772 301 aa11.6□□□□□ -0.55
COL17A1-201ENST00000353479 S100A7L2Q5SY68 101 aa11.6□□□□□ -0.55
COL17A1-201ENST00000353479 PATE2Q6UY27 113 aa11.6□□□□□ -0.55
COL17A1-201ENST00000353479 IGHG2P01859 326 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms