RNA–Protein interactions for RNA: ENST00000345512.7

PTPRU-201, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRU, Length 4,470 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-201ENST00000345512 TRANK1O15050 2925 aa12.2□□□□□ -0.46
PTPRU-201ENST00000345512 TRBV7-1A0A0A6YYK4 115 aa12.2□□□□□ -0.46
PTPRU-201ENST00000345512 PAPPA-AS1Q5QFB9 102 aa12.2□□□□□ -0.46
PTPRU-201ENST00000345512 EMP1P54849 157 aa12.19□□□□□ -0.46
PTPRU-201ENST00000345512 MTURNQ8N3F0 131 aa12.19□□□□□ -0.46
PTPRU-201ENST00000345512 COX6CP09669 75 aa12.19□□□□□ -0.46
PTPRU-201ENST00000345512 EFNA4P52798 201 aa12.19□□□□□ -0.46
PTPRU-201ENST00000345512 FAM110DQ8TAY7 271 aaPredicted RBP12.19□□□□□ -0.46
PTPRU-201ENST00000345512 PSMB11A5LHX3 300 aa12.19□□□□□ -0.46
PTPRU-201ENST00000345512 NPIPB6E9PJ23 425 aa12.19□□□□□ -0.46
PTPRU-201ENST00000345512 BRD3OSQ6XYD6 125 aa12.19□□□□□ -0.46
PTPRU-201ENST00000345512 C7orf69Q9H7B7 122 aa12.19□□□□□ -0.46
PTPRU-201ENST00000345512 LOXL1Q08397 574 aaPredicted RBP12.18□□□□□ -0.46
PTPRU-201ENST00000345512 LINC00477Q96M19 166 aa12.18□□□□□ -0.46
PTPRU-201ENST00000345512 CSTL1Q9H114 145 aa12.18□□□□□ -0.46
PTPRU-201ENST00000345512 MOB4Q9Y3A3 225 aa12.18□□□□□ -0.46
PTPRU-201ENST00000345512 GRNP28799 593 aaKnown RBP12.17□□□□□ -0.46
PTPRU-201ENST00000345512 C8orf86Q6ZUL3 223 aa12.17□□□□□ -0.46
PTPRU-201ENST00000345512 Q8N976 141 aa12.17□□□□□ -0.46
PTPRU-201ENST00000345512 TTTY13Q9BZ97 58 aa12.17□□□□□ -0.46
PTPRU-201ENST00000345512 SIVA1O15304 175 aa12.17□□□□□ -0.46
PTPRU-201ENST00000345512 SAP30O75446 220 aa12.17□□□□□ -0.46
PTPRU-201ENST00000345512 PGPEP1Q9NXJ5 209 aa12.17□□□□□ -0.46
PTPRU-201ENST00000345512 CDH23Q9H251 3354 aa12.17□□□□□ -0.46
PTPRU-201ENST00000345512 NPFFO15130 113 aa12.17□□□□□ -0.46
PTPRU-201ENST00000345512 ETDBQ3ZM63 59 aa12.17□□□□□ -0.46
PTPRU-201ENST00000345512 DSCAMO60469 2012 aa12.16□□□□□ -0.46
PTPRU-201ENST00000345512 MYCNOSP40205 109 aa12.16□□□□□ -0.46
PTPRU-201ENST00000345512 AGPAT4-IT1Q9H0P7 198 aa12.16□□□□□ -0.46
PTPRU-201ENST00000345512 VWC2LB2RUY7 222 aa12.16□□□□□ -0.46
PTPRU-201ENST00000345512 SUMO2P61956 95 aaKnown RBP12.16□□□□□ -0.46
PTPRU-201ENST00000345512 BPESC1Q9GZL8 116 aa12.16□□□□□ -0.46
PTPRU-201ENST00000345512 COL4A2P08572 1712 aa12.16□□□□□ -0.46
PTPRU-201ENST00000345512 MUC6Q6W4X9 2439 aa12.15□□□□□ -0.46
PTPRU-201ENST00000345512 IGLV11-55A0A075B6I3 123 aa12.15□□□□□ -0.46
PTPRU-201ENST00000345512 IGHV3-64A0A075B6Q5 118 aa12.15□□□□□ -0.46
PTPRU-201ENST00000345512 C2orf66Q6UXQ4 117 aa12.15□□□□□ -0.46
PTPRU-201ENST00000345512 DYNLRB2Q8TF09 96 aa12.15□□□□□ -0.46
PTPRU-201ENST00000345512 CFHR4Q92496 578 aa12.15□□□□□ -0.46
PTPRU-201ENST00000345512 PTPRQQ9UMZ3 2332 aa12.14□□□□□ -0.47
PTPRU-201ENST00000345512 CTSGP08311 255 aa12.14□□□□□ -0.47
PTPRU-201ENST00000345512 VCX2Q9H322 139 aa12.14□□□□□ -0.47
PTPRU-201ENST00000345512 SPOCK3Q9BQ16 436 aa12.14□□□□□ -0.47
PTPRU-201ENST00000345512 GEMIN7Q9H840 131 aaKnown RBP12.14□□□□□ -0.47
PTPRU-201ENST00000345512 TRAV2A0A0B4J234 112 aa12.14□□□□□ -0.47
PTPRU-201ENST00000345512 OR11H6Q8NGC7 330 aa12.14□□□□□ -0.47
PTPRU-201ENST00000345512 MRAP2Q96G30 205 aa12.14□□□□□ -0.47
PTPRU-201ENST00000345512 A0A087WWL8 130 aa12.13□□□□□ -0.47
PTPRU-201ENST00000345512 FCN3O75636 299 aa12.13□□□□□ -0.47
PTPRU-201ENST00000345512 UBE2E1P51965 193 aa12.13□□□□□ -0.47
PTPRU-201ENST00000345512 AMTNQ6UX39 209 aa12.13□□□□□ -0.47
PTPRU-201ENST00000345512 IGHV3OR16-12A0A075B7B8 117 aa12.13□□□□□ -0.47
PTPRU-201ENST00000345512 SPRY2O43597 315 aa12.13□□□□□ -0.47
PTPRU-201ENST00000345512 TRAV12-3A0A0B4J271 114 aa12.13□□□□□ -0.47
PTPRU-201ENST00000345512 WI2-2373I1.2A0A1W2PRP0 233 aa12.13□□□□□ -0.47
PTPRU-201ENST00000345512 BOD1L2Q8IYS8 172 aa12.13□□□□□ -0.47
PTPRU-201ENST00000345512 CCL19Q99731 98 aa12.13□□□□□ -0.47
PTPRU-201ENST00000345512 SMIM2Q9BVW6 85 aa12.13□□□□□ -0.47
PTPRU-201ENST00000345512 TNFRSF18Q9Y5U5 241 aa12.13□□□□□ -0.47
PTPRU-201ENST00000345512 TRBV25-1A0A075B6N4 114 aa12.13□□□□□ -0.47
PTPRU-201ENST00000345512 FOXE3Q13461 319 aa12.13□□□□□ -0.47
PTPRU-201ENST00000345512 CEND1Q8N111 149 aa12.13□□□□□ -0.47
PTPRU-201ENST00000345512 H3BMG7 143 aa12.12□□□□□ -0.47
PTPRU-201ENST00000345512 ZNF688P0C7X2 276 aa12.12□□□□□ -0.47
PTPRU-201ENST00000345512 SPATA12Q7Z6I5 190 aa12.12□□□□□ -0.47
PTPRU-201ENST00000345512 RHPN1-AS1Q9BWJ2 59 aa12.12□□□□□ -0.47
PTPRU-201ENST00000345512 F8VRH5 84 aa12.12□□□□□ -0.47
PTPRU-201ENST00000345512 DLX4Q92988 240 aaPredicted RBP12.12□□□□□ -0.47
PTPRU-201ENST00000345512 PRO3102Q9H379 93 aa12.12□□□□□ -0.47
PTPRU-201ENST00000345512 PRAC2D3DTV9 90 aa12.12□□□□□ -0.47
PTPRU-201ENST00000345512 H3BUX3 64 aa12.12□□□□□ -0.47
PTPRU-201ENST00000345512 CRXO43186 299 aaPredicted RBP12.12□□□□□ -0.47
PTPRU-201ENST00000345512 CSPG4Q6UVK1 2322 aa12.12□□□□□ -0.47
PTPRU-201ENST00000345512 K7EMI3 77 aa12.11□□□□□ -0.47
PTPRU-201ENST00000345512 NPBQ8NG41 125 aa12.11□□□□□ -0.47
PTPRU-201ENST00000345512 TRBV6-1A0A0K0K1D8 114 aa12.11□□□□□ -0.47
PTPRU-201ENST00000345512 Q5PR19 223 aa12.11□□□□□ -0.47
PTPRU-201ENST00000345512 DUX5Q96PT3 197 aa12.11□□□□□ -0.47
PTPRU-201ENST00000345512 SLC25A16P16260 332 aa12.11□□□□□ -0.47
PTPRU-201ENST00000345512 RUSC1-AS1Q66K80 236 aa12.11□□□□□ -0.47
PTPRU-201ENST00000345512 NEGR1Q7Z3B1 354 aa12.11□□□□□ -0.47
PTPRU-201ENST00000345512 TSSC4Q9Y5U2 329 aaPredicted RBP12.11□□□□□ -0.47
PTPRU-201ENST00000345512 PRUNE2Q8WUY3 3088 aa12.11□□□□□ -0.47
PTPRU-201ENST00000345512 IGHV7-81A0A0B4J1V7 117 aa12.11□□□□□ -0.47
PTPRU-201ENST00000345512 A8MWV9 139 aa12.11□□□□□ -0.47
PTPRU-201ENST00000345512 VCYO14598 125 aa12.11□□□□□ -0.47
PTPRU-201ENST00000345512 ACACBO00763 2458 aa12.1□□□□□ -0.47
PTPRU-201ENST00000345512 FAM208BQ5VWN6 2430 aa12.1□□□□□ -0.47
PTPRU-201ENST00000345512 K7ENP7 123 aa12.1□□□□□ -0.47
PTPRU-201ENST00000345512 FXYD2P54710 66 aa12.1□□□□□ -0.47
PTPRU-201ENST00000345512 LY6DQ14210 128 aa12.1□□□□□ -0.47
PTPRU-201ENST00000345512 FANCD2OSQ96PS1 177 aa12.1□□□□□ -0.47
PTPRU-201ENST00000345512 OVOL3O00110 214 aa12.1□□□□□ -0.47
PTPRU-201ENST00000345512 MYMXA0A1B0GTQ4 84 aa12.1□□□□□ -0.47
PTPRU-201ENST00000345512 ANXA2RQ3ZCQ2 193 aa12.1□□□□□ -0.47
PTPRU-201ENST00000345512 PRADC1Q9BSG0 188 aa12.1□□□□□ -0.47
PTPRU-201ENST00000345512 CEP295Q9C0D2 2601 aa12.1□□□□□ -0.47
PTPRU-201ENST00000345512 TRAV8-2A0A0B4J237 113 aa12.09□□□□□ -0.47
PTPRU-201ENST00000345512 ZNF493Q6ZR52 646 aa12.09□□□□□ -0.47
PTPRU-201ENST00000345512 A0A087WX48 190 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms