RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 RBMY1CP0DJD4 496 aa12.84□□□□□ -0.35
SMARCA4-201ENST00000344626 SHISA2Q6UWI4 295 aa12.84□□□□□ -0.35
SMARCA4-201ENST00000344626 FAM19A2Q8N3H0 131 aa12.84□□□□□ -0.35
SMARCA4-201ENST00000344626 TRBV24-1A0A075B6N3 115 aa12.84□□□□□ -0.35
SMARCA4-201ENST00000344626 SERF1AO75920 110 aa12.84□□□□□ -0.35
SMARCA4-201ENST00000344626 SLAQ13239 276 aa12.84□□□□□ -0.35
SMARCA4-201ENST00000344626 RNF151Q2KHN1 245 aa12.84□□□□□ -0.35
SMARCA4-201ENST00000344626 ATOH7Q8N100 152 aa12.84□□□□□ -0.35
SMARCA4-201ENST00000344626 TMEM256Q8N2U0 113 aa12.84□□□□□ -0.35
SMARCA4-201ENST00000344626 GFI1BQ5VTD9 330 aa12.83□□□□□ -0.36
SMARCA4-201ENST00000344626 FNDC4Q9H6D8 234 aaPredicted RBP12.83□□□□□ -0.36
SMARCA4-201ENST00000344626 SMAD5-AS1Q9Y6J3 95 aa12.83□□□□□ -0.36
SMARCA4-201ENST00000344626 FAM231BA6NCW3 169 aa12.83□□□□□ -0.36
SMARCA4-201ENST00000344626 NCR2O95944 276 aa12.83□□□□□ -0.36
SMARCA4-201ENST00000344626 TEX43Q6ZNM6 134 aa12.83□□□□□ -0.36
SMARCA4-201ENST00000344626 LINC00469Q8N7U9 141 aa12.83□□□□□ -0.36
SMARCA4-201ENST00000344626 LY6G5BQ8NDX9 201 aa12.83□□□□□ -0.36
SMARCA4-201ENST00000344626 PRR25Q96S07 402 aa12.83□□□□□ -0.36
SMARCA4-201ENST00000344626 CSTL1Q9H114 145 aa12.83□□□□□ -0.36
SMARCA4-201ENST00000344626 CKS1BP61024 79 aa12.83□□□□□ -0.36
SMARCA4-201ENST00000344626 NIT1Q86X76 327 aa12.83□□□□□ -0.36
SMARCA4-201ENST00000344626 C4orf3Q8WVX3 66 aa12.83□□□□□ -0.36
SMARCA4-201ENST00000344626 C11orf71Q6IPW1 123 aa12.83□□□□□ -0.36
SMARCA4-201ENST00000344626 GAGE12BA1L429 117 aa12.82□□□□□ -0.36
SMARCA4-201ENST00000344626 GAGE7O76087 117 aa12.82□□□□□ -0.36
SMARCA4-201ENST00000344626 GAGE12FP0CL80 117 aa12.82□□□□□ -0.36
SMARCA4-201ENST00000344626 GAGE12GP0CL81 117 aa12.82□□□□□ -0.36
SMARCA4-201ENST00000344626 GAGE12IP0CL82 117 aa12.82□□□□□ -0.36
SMARCA4-201ENST00000344626 LINC00479Q96M42 142 aa12.82□□□□□ -0.36
SMARCA4-201ENST00000344626 DNAL4O96015 105 aa12.82□□□□□ -0.36
SMARCA4-201ENST00000344626 RITA1Q96K30 269 aa12.82□□□□□ -0.36
SMARCA4-201ENST00000344626 LSM4Q9Y4Z0 139 aaKnown RBP12.82□□□□□ -0.36
SMARCA4-201ENST00000344626 TRAV12-2A0A075B6T6 113 aa12.82□□□□□ -0.36
SMARCA4-201ENST00000344626 TEX48A0A1B0GUV7 120 aa12.82□□□□□ -0.36
SMARCA4-201ENST00000344626 I3L2K1 104 aa12.82□□□□□ -0.36
SMARCA4-201ENST00000344626 CT83Q5H943 113 aa12.82□□□□□ -0.36
SMARCA4-201ENST00000344626 LINC00587B1AMM8 73 aa12.81□□□□□ -0.36
SMARCA4-201ENST00000344626 SS18Q15532 418 aa12.81□□□□□ -0.36
SMARCA4-201ENST00000344626 C8orf49Q96NF6 230 aa12.81□□□□□ -0.36
SMARCA4-201ENST00000344626 VPS25Q9BRG1 176 aa12.81□□□□□ -0.36
SMARCA4-201ENST00000344626 COL5A1P20908 1838 aaPredicted RBP12.81□□□□□ -0.36
SMARCA4-201ENST00000344626 PRR20EP86478 221 aa12.81□□□□□ -0.36
SMARCA4-201ENST00000344626 PRR20CP86479 221 aa12.81□□□□□ -0.36
SMARCA4-201ENST00000344626 PRR20DP86480 221 aa12.81□□□□□ -0.36
SMARCA4-201ENST00000344626 PRR20BP86481 221 aa12.81□□□□□ -0.36
SMARCA4-201ENST00000344626 PRR20AP86496 221 aa12.81□□□□□ -0.36
SMARCA4-201ENST00000344626 APOMO95445 188 aa12.81□□□□□ -0.36
SMARCA4-201ENST00000344626 IGHV4OR15-8A0A075B7B6 117 aa12.81□□□□□ -0.36
SMARCA4-201ENST00000344626 A0A087WW49 117 aa12.81□□□□□ -0.36
SMARCA4-201ENST00000344626 IFI27L1Q96BM0 104 aa12.81□□□□□ -0.36
SMARCA4-201ENST00000344626 TRAV25A0A0B4J276 109 aa12.8□□□□□ -0.36
SMARCA4-201ENST00000344626 COL5A1-AS1Q5SY13 56 aa12.8□□□□□ -0.36
SMARCA4-201ENST00000344626 DEFB104AQ8WTQ1 72 aa12.8□□□□□ -0.36
SMARCA4-201ENST00000344626 NUP210LQ5VU65 1888 aa12.8□□□□□ -0.36
SMARCA4-201ENST00000344626 FABP2P12104 132 aa12.8□□□□□ -0.36
SMARCA4-201ENST00000344626 MEGF9Q9H1U4 602 aa12.8□□□□□ -0.36
SMARCA4-201ENST00000344626 K7EIM0 57 aa12.8□□□□□ -0.36
SMARCA4-201ENST00000344626 GHRHP01286 108 aa12.8□□□□□ -0.36
SMARCA4-201ENST00000344626 RNASE1P07998 156 aaKnown RBP12.8□□□□□ -0.36
SMARCA4-201ENST00000344626 INSL3P51460 131 aa12.8□□□□□ -0.36
SMARCA4-201ENST00000344626 K7EMT4 169 aa12.8□□□□□ -0.36
SMARCA4-201ENST00000344626 CRYGCP07315 174 aa12.8□□□□□ -0.36
SMARCA4-201ENST00000344626 TRAV9-2A0A087WT02 112 aa12.8□□□□□ -0.36
SMARCA4-201ENST00000344626 LOC102724200A0A096LPH7 203 aaPredicted RBP12.8□□□□□ -0.36
SMARCA4-201ENST00000344626 ANXA2RQ3ZCQ2 193 aa12.8□□□□□ -0.36
SMARCA4-201ENST00000344626 ODF3BA8MYP8 253 aa12.79□□□□□ -0.36
SMARCA4-201ENST00000344626 IGLV2-23P01705 113 aa12.79□□□□□ -0.36
SMARCA4-201ENST00000344626 Q6YL49 198 aa12.79□□□□□ -0.36
SMARCA4-201ENST00000344626 APRG1Q8IVJ8 170 aa12.79□□□□□ -0.36
SMARCA4-201ENST00000344626 PHLDA1Q8WV24 401 aaPredicted RBP12.79□□□□□ -0.36
SMARCA4-201ENST00000344626 FXYD5Q96DB9 178 aa12.79□□□□□ -0.36
SMARCA4-201ENST00000344626 LENEPQ9Y5L5 61 aa12.79□□□□□ -0.36
SMARCA4-201ENST00000344626 PRSS46E5RG02 174 aa12.79□□□□□ -0.36
SMARCA4-201ENST00000344626 CIDEAO60543 219 aa12.79□□□□□ -0.36
SMARCA4-201ENST00000344626 GAGE12JA6NER3 117 aa12.79□□□□□ -0.36
SMARCA4-201ENST00000344626 GAGE1Q13065 139 aa12.79□□□□□ -0.36
SMARCA4-201ENST00000344626 GAGE4Q13068 117 aa12.79□□□□□ -0.36
SMARCA4-201ENST00000344626 GAGE5Q13069 117 aa12.79□□□□□ -0.36
SMARCA4-201ENST00000344626 GAGE13Q4V321 117 aa12.79□□□□□ -0.36
SMARCA4-201ENST00000344626 C1orf159Q96HA4 380 aa12.79□□□□□ -0.36
SMARCA4-201ENST00000344626 RBAKDNA6NC62 111 aa12.78□□□□□ -0.36
SMARCA4-201ENST00000344626 OR2K2Q8NGT1 345 aa12.78□□□□□ -0.36
SMARCA4-201ENST00000344626 LINC00574Q9H8X3 128 aa12.78□□□□□ -0.36
SMARCA4-201ENST00000344626 TRBV25-1A0A075B6N4 114 aa12.78□□□□□ -0.36
SMARCA4-201ENST00000344626 GPHB5Q86YW7 130 aa12.78□□□□□ -0.36
SMARCA4-201ENST00000344626 ANKRD17O75179 2603 aaKnown RBP12.78□□□□□ -0.36
SMARCA4-201ENST00000344626 RPL24P83731 157 aaKnown RBP12.78□□□□□ -0.36
SMARCA4-201ENST00000344626 DMRTA1Q5VZB9 504 aa12.78□□□□□ -0.36
SMARCA4-201ENST00000344626 ODF3L1Q8IXM7 274 aa12.78□□□□□ -0.36
SMARCA4-201ENST00000344626 RNF152Q8N8N0 203 aa12.78□□□□□ -0.36
SMARCA4-201ENST00000344626 RASL10AQ92737 203 aa12.78□□□□□ -0.36
SMARCA4-201ENST00000344626 PYGO2Q9BRQ0 406 aa12.78□□□□□ -0.36
SMARCA4-201ENST00000344626 NCKAP5O14513 1909 aa12.78□□□□□ -0.36
SMARCA4-201ENST00000344626 IGKCP01834 107 aa12.78□□□□□ -0.36
SMARCA4-201ENST00000344626 SSBP2P81877 361 aaPredicted RBP12.78□□□□□ -0.36
SMARCA4-201ENST00000344626 ATRAIDQ6UW56 229 aa12.78□□□□□ -0.36
SMARCA4-201ENST00000344626 TRBV7-9A0A0J9YWB2 115 aa12.77□□□□□ -0.36
SMARCA4-201ENST00000344626 CTSGP08311 255 aa12.77□□□□□ -0.36
SMARCA4-201ENST00000344626 VWC2Q2TAL6 325 aa12.77□□□□□ -0.36
SMARCA4-201ENST00000344626 ZNF295-AS1Q8N0V1 137 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms