RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 DAZAP1Q96EP5 407 aaKnown RBP11.66□□□□□ -0.54
LIMS1-202ENST00000338045 M0QZ24 198 aa11.65□□□□□ -0.54
LIMS1-202ENST00000338045 MS4A6AQ9H2W1 248 aa11.65□□□□□ -0.54
LIMS1-202ENST00000338045 SELENOKQ9Y6D0 94 aa11.65□□□□□ -0.54
LIMS1-202ENST00000338045 K7EP13 123 aa11.64□□□□□ -0.55
LIMS1-202ENST00000338045 CCL24O00175 119 aa11.64□□□□□ -0.55
LIMS1-202ENST00000338045 OVOL1O14753 267 aa11.64□□□□□ -0.55
LIMS1-202ENST00000338045 NPSP0C0P6 89 aa11.64□□□□□ -0.55
LIMS1-202ENST00000338045 CT45A10P0DMU9 189 aa11.64□□□□□ -0.55
LIMS1-202ENST00000338045 OR2D3Q8NGH3 330 aa11.64□□□□□ -0.55
LIMS1-202ENST00000338045 NDFIP1Q9BT67 221 aa11.64□□□□□ -0.55
LIMS1-202ENST00000338045 PHOX2AO14813 284 aa11.63□□□□□ -0.55
LIMS1-202ENST00000338045 ID1P41134 155 aa11.63□□□□□ -0.55
LIMS1-202ENST00000338045 ZNF138P52744 262 aa11.63□□□□□ -0.55
LIMS1-202ENST00000338045 TMEM78Q5T7P6 136 aa11.63□□□□□ -0.55
LIMS1-202ENST00000338045 A0A1W2PRX2 142 aa11.63□□□□□ -0.55
LIMS1-202ENST00000338045 A8MWL6 223 aa11.63□□□□□ -0.55
LIMS1-202ENST00000338045 K7EQG2 157 aa11.63□□□□□ -0.55
LIMS1-202ENST00000338045 TRGC2P03986 189 aa11.63□□□□□ -0.55
LIMS1-202ENST00000338045 CSN3P07498 182 aa11.63□□□□□ -0.55
LIMS1-202ENST00000338045 LENEPQ9Y5L5 61 aa11.63□□□□□ -0.55
LIMS1-202ENST00000338045 FAM231BA6NCW3 169 aa11.62□□□□□ -0.55
LIMS1-202ENST00000338045 ADARB2-AS1A8MUL3 147 aa11.62□□□□□ -0.55
LIMS1-202ENST00000338045 TCL1AP56279 114 aa11.62□□□□□ -0.55
LIMS1-202ENST00000338045 GFRA4Q9GZZ7 299 aa11.62□□□□□ -0.55
LIMS1-202ENST00000338045 IZUMO1RA6ND01 250 aa11.61□□□□□ -0.55
LIMS1-202ENST00000338045 M0R143 59 aa11.61□□□□□ -0.55
LIMS1-202ENST00000338045 HOXA5P20719 270 aa11.61□□□□□ -0.55
LIMS1-202ENST00000338045 ZNF80P51504 273 aaPredicted RBP11.61□□□□□ -0.55
LIMS1-202ENST00000338045 SRSF2Q01130 221 aaKnown RBP11.61□□□□□ -0.55
LIMS1-202ENST00000338045 FAM162BQ5T6X4 162 aa11.61□□□□□ -0.55
LIMS1-202ENST00000338045 NUP35Q8NFH5 326 aa11.61□□□□□ -0.55
LIMS1-202ENST00000338045 OR8A1Q8NGG7 326 aa11.61□□□□□ -0.55
LIMS1-202ENST00000338045 OR10J6PQ8NGY7 276 aa11.61□□□□□ -0.55
LIMS1-202ENST00000338045 LINC00477Q96M19 166 aa11.61□□□□□ -0.55
LIMS1-202ENST00000338045 NAT8BQ9UHF3 227 aa11.61□□□□□ -0.55
LIMS1-202ENST00000338045 SETXQ7Z333 2677 aaKnown RBP11.61□□□□□ -0.55
LIMS1-202ENST00000338045 BAHCC1Q9P281 2608 aa11.61□□□□□ -0.55
LIMS1-202ENST00000338045 F8P00451 2351 aa11.61□□□□□ -0.55
LIMS1-202ENST00000338045 A0A1B0GUS0 222 aa11.61□□□□□ -0.55
LIMS1-202ENST00000338045 SH2D1AO60880 128 aa11.61□□□□□ -0.55
LIMS1-202ENST00000338045 WFDC3Q8IUB2 231 aa11.61□□□□□ -0.55
LIMS1-202ENST00000338045 HIGD1CA8MV81 97 aa11.6□□□□□ -0.55
LIMS1-202ENST00000338045 RPL19P84098 196 aaKnown RBP11.6□□□□□ -0.55
LIMS1-202ENST00000338045 DMRTA1Q5VZB9 504 aa11.6□□□□□ -0.55
LIMS1-202ENST00000338045 GTSF1Q8WW33 167 aa11.6□□□□□ -0.55
LIMS1-202ENST00000338045 TRAV2A0A0B4J234 112 aa11.59□□□□□ -0.55
LIMS1-202ENST00000338045 ZNF705DP0CH99 300 aaPredicted RBP11.59□□□□□ -0.55
LIMS1-202ENST00000338045 ZNF705BP0CI00 300 aaPredicted RBP11.59□□□□□ -0.55
LIMS1-202ENST00000338045 FOXA3P55318 350 aaPredicted RBP11.59□□□□□ -0.55
LIMS1-202ENST00000338045 DEFB1P60022 68 aa11.59□□□□□ -0.55
LIMS1-202ENST00000338045 KRTAP10-3P60369 221 aa11.59□□□□□ -0.55
LIMS1-202ENST00000338045 ACTL10Q5JWF8 245 aa11.59□□□□□ -0.55
LIMS1-202ENST00000338045 FAM19A4Q96LR4 140 aa11.59□□□□□ -0.55
LIMS1-202ENST00000338045 SIGLEC8Q9NYZ4 499 aa11.59□□□□□ -0.55
LIMS1-202ENST00000338045 SETD2Q9BYW2 2564 aaPredicted RBP11.59□□□□□ -0.55
LIMS1-202ENST00000338045 TRBV7-9A0A0J9YWB2 115 aa11.59□□□□□ -0.55
LIMS1-202ENST00000338045 EREGO14944 169 aa11.59□□□□□ -0.55
LIMS1-202ENST00000338045 SNRPD3P62318 126 aaKnown RBP11.59□□□□□ -0.55
LIMS1-202ENST00000338045 PAFAH1B2P68402 229 aa11.59□□□□□ -0.55
LIMS1-202ENST00000338045 FRZBQ92765 325 aa11.59□□□□□ -0.55
LIMS1-202ENST00000338045 C2CD3Q4AC94 2353 aa11.58□□□□□ -0.56
LIMS1-202ENST00000338045 FABP5P3A8MUU1 101 aa11.58□□□□□ -0.56
LIMS1-202ENST00000338045 F6UB75 175 aa11.58□□□□□ -0.56
LIMS1-202ENST00000338045 FRMD6-AS1P0C7T7 363 aa11.58□□□□□ -0.56
LIMS1-202ENST00000338045 ZNF688P0C7X2 276 aa11.58□□□□□ -0.56
LIMS1-202ENST00000338045 TFPI2P48307 235 aa11.58□□□□□ -0.56
LIMS1-202ENST00000338045 DEFB114Q30KQ6 69 aa11.58□□□□□ -0.56
LIMS1-202ENST00000338045 NDUFA11Q86Y39 141 aa11.58□□□□□ -0.56
LIMS1-202ENST00000338045 HIST1H2BKO60814 126 aa11.57□□□□□ -0.56
LIMS1-202ENST00000338045 HIST1H2BJP06899 126 aa11.57□□□□□ -0.56
LIMS1-202ENST00000338045 HIST1H2BOP23527 126 aa11.57□□□□□ -0.56
LIMS1-202ENST00000338045 HIST1H2BBP33778 126 aa11.57□□□□□ -0.56
LIMS1-202ENST00000338045 HIST1H2BDP58876 126 aa11.57□□□□□ -0.56
LIMS1-202ENST00000338045 HIST1H2BCP62807 126 aa11.57□□□□□ -0.56
LIMS1-202ENST00000338045 HIST1H1AQ02539 215 aaPredicted RBP11.57□□□□□ -0.56
LIMS1-202ENST00000338045 HIST2H2BEQ16778 126 aa11.57□□□□□ -0.56
LIMS1-202ENST00000338045 COX19Q49B96 90 aa11.57□□□□□ -0.56
LIMS1-202ENST00000338045 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.57□□□□□ -0.56
LIMS1-202ENST00000338045 RASL11AQ6T310 242 aa11.57□□□□□ -0.56
LIMS1-202ENST00000338045 RBPMS2Q6ZRY4 209 aaKnown RBP11.57□□□□□ -0.56
LIMS1-202ENST00000338045 ATP5L2Q7Z4Y8 100 aa11.57□□□□□ -0.56
LIMS1-202ENST00000338045 TMEM61Q8N0U2 210 aa11.57□□□□□ -0.56
LIMS1-202ENST00000338045 RNASE8Q8TDE3 154 aaKnown RBP11.57□□□□□ -0.56
LIMS1-202ENST00000338045 HIST1H2BHQ93079 126 aa11.57□□□□□ -0.56
LIMS1-202ENST00000338045 HIST1H2BNQ99877 126 aa11.57□□□□□ -0.56
LIMS1-202ENST00000338045 HIST1H2BMQ99879 126 aa11.57□□□□□ -0.56
LIMS1-202ENST00000338045 GNB1LQ9BYB4 327 aa11.57□□□□□ -0.56
LIMS1-202ENST00000338045 CSTL1Q9H114 145 aa11.57□□□□□ -0.56
LIMS1-202ENST00000338045 SPINK4O60575 86 aa11.57□□□□□ -0.56
LIMS1-202ENST00000338045 PSMG4Q5JS54 123 aa11.57□□□□□ -0.56
LIMS1-202ENST00000338045 ZFAND2AQ8N6M9 145 aa11.57□□□□□ -0.56
LIMS1-202ENST00000338045 DYNLRB2Q8TF09 96 aa11.57□□□□□ -0.56
LIMS1-202ENST00000338045 TRAPPC1Q9Y5R8 145 aa11.57□□□□□ -0.56
LIMS1-202ENST00000338045 TMEM189A5PLL7 270 aa11.56□□□□□ -0.56
LIMS1-202ENST00000338045 CYSRT1A8MQ03 144 aa11.56□□□□□ -0.56
LIMS1-202ENST00000338045 TRGC1P0CF51 173 aa11.56□□□□□ -0.56
LIMS1-202ENST00000338045 GZMBP10144 247 aa11.56□□□□□ -0.56
LIMS1-202ENST00000338045 MRPL54Q6P161 138 aaKnown RBP11.56□□□□□ -0.56
LIMS1-202ENST00000338045 ZNF575Q86XF7 245 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 157.3 ms