RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 ASCL2Q99929 193 aa11.09□□□□□ -0.63
CCDC88C-202ENST00000334448 RPP21Q9H633 154 aaKnown RBP11.09□□□□□ -0.63
CCDC88C-202ENST00000334448 HLA-DRB4X5D2U9 266 aa11.09□□□□□ -0.63
CCDC88C-202ENST00000334448 VWFP04275 2813 aa11.08□□□□□ -0.63
CCDC88C-202ENST00000334448 SMIM27A0A1W2PRY6 76 aa11.08□□□□□ -0.64
CCDC88C-202ENST00000334448 KLLNB2CW77 178 aa11.08□□□□□ -0.64
CCDC88C-202ENST00000334448 SH2D1AO60880 128 aa11.08□□□□□ -0.64
CCDC88C-202ENST00000334448 PRB4P10163 310 aaPredicted RBP11.08□□□□□ -0.64
CCDC88C-202ENST00000334448 S100PP25815 95 aa11.08□□□□□ -0.64
CCDC88C-202ENST00000334448 DEFB131AP59861 70 aa11.08□□□□□ -0.64
CCDC88C-202ENST00000334448 GDF5OSQ5U4N7 250 aa11.08□□□□□ -0.64
CCDC88C-202ENST00000334448 KCNIP4Q6PIL6 250 aa11.08□□□□□ -0.64
CCDC88C-202ENST00000334448 C12orf54Q6X4T0 127 aa11.08□□□□□ -0.64
CCDC88C-202ENST00000334448 DAZAP1Q96EP5 407 aaKnown RBP11.08□□□□□ -0.64
CCDC88C-202ENST00000334448 GFRA4Q9GZZ7 299 aa11.08□□□□□ -0.64
CCDC88C-202ENST00000334448 ANK2Q01484 3957 aa11.07□□□□□ -0.64
CCDC88C-202ENST00000334448 FABP5P3A8MUU1 101 aa11.07□□□□□ -0.64
CCDC88C-202ENST00000334448 ZNF705GA8MUZ8 300 aaPredicted RBP11.07□□□□□ -0.64
CCDC88C-202ENST00000334448 ZNF705DP0CH99 300 aaPredicted RBP11.07□□□□□ -0.64
CCDC88C-202ENST00000334448 ZNF705BP0CI00 300 aaPredicted RBP11.07□□□□□ -0.64
CCDC88C-202ENST00000334448 ZNF80P51504 273 aaPredicted RBP11.07□□□□□ -0.64
CCDC88C-202ENST00000334448 AMTNQ6UX39 209 aa11.07□□□□□ -0.64
CCDC88C-202ENST00000334448 C3orf56Q8N813 242 aa11.07□□□□□ -0.64
CCDC88C-202ENST00000334448 TSKUQ8WUA8 353 aa11.07□□□□□ -0.64
CCDC88C-202ENST00000334448 A8MWL6 223 aa11.06□□□□□ -0.64
CCDC88C-202ENST00000334448 H3BMM0 161 aa11.06□□□□□ -0.64
CCDC88C-202ENST00000334448 TYMSP04818 313 aa11.06□□□□□ -0.64
CCDC88C-202ENST00000334448 CXCL1P09341 107 aa11.06□□□□□ -0.64
CCDC88C-202ENST00000334448 LEPP41159 167 aa11.06□□□□□ -0.64
CCDC88C-202ENST00000334448 FOXA3P55318 350 aaPredicted RBP11.06□□□□□ -0.64
CCDC88C-202ENST00000334448 LINC01559Q495D7 138 aa11.06□□□□□ -0.64
CCDC88C-202ENST00000334448 Q6AWC8 147 aa11.06□□□□□ -0.64
CCDC88C-202ENST00000334448 TSPOP30536 169 aa11.05□□□□□ -0.64
CCDC88C-202ENST00000334448 RPS20P60866 119 aaKnown RBP11.05□□□□□ -0.64
CCDC88C-202ENST00000334448 PRR9Q5T870 116 aa11.05□□□□□ -0.64
CCDC88C-202ENST00000334448 C19orf73Q9NVV2 129 aa11.05□□□□□ -0.64
CCDC88C-202ENST00000334448 COL6A5A8TX70 2615 aa11.04□□□□□ -0.64
CCDC88C-202ENST00000334448 TRAV21A0A0B4J279 112 aa11.04□□□□□ -0.64
CCDC88C-202ENST00000334448 OR11H12B2RN74 326 aa11.04□□□□□ -0.64
CCDC88C-202ENST00000334448 OR2D3Q8NGH3 330 aa11.04□□□□□ -0.64
CCDC88C-202ENST00000334448 SPATA3Q8NHX4 192 aa11.04□□□□□ -0.64
CCDC88C-202ENST00000334448 URGCP-MRPS24S4R325 110 aa11.04□□□□□ -0.64
CCDC88C-202ENST00000334448 STAB1Q9NY15 2570 aa11.03□□□□□ -0.64
CCDC88C-202ENST00000334448 XKRY2A2RUG3 117 aa11.03□□□□□ -0.64
CCDC88C-202ENST00000334448 CD33P20138 364 aa11.03□□□□□ -0.64
CCDC88C-202ENST00000334448 NEU1Q99519 415 aa11.03□□□□□ -0.64
CCDC88C-202ENST00000334448 NAT8BQ9UHF3 227 aa11.03□□□□□ -0.64
CCDC88C-202ENST00000334448 TGIF2-C20orf24A0A0A6YYL0 155 aa11.02□□□□□ -0.65
CCDC88C-202ENST00000334448 KNCNA6PVL3 124 aa11.02□□□□□ -0.65
CCDC88C-202ENST00000334448 CA1P00915 261 aaPredicted RBP11.02□□□□□ -0.65
CCDC88C-202ENST00000334448 RAB5AP20339 215 aa11.02□□□□□ -0.65
CCDC88C-202ENST00000334448 CDKN1BP46527 198 aa11.02□□□□□ -0.65
CCDC88C-202ENST00000334448 ACTL10Q5JWF8 245 aa11.02□□□□□ -0.65
CCDC88C-202ENST00000334448 ZNF575Q86XF7 245 aa11.02□□□□□ -0.65
CCDC88C-202ENST00000334448 GTSF1Q8WW33 167 aa11.02□□□□□ -0.65
CCDC88C-202ENST00000334448 FAM210BQ96KR6 192 aa11.02□□□□□ -0.65
CCDC88C-202ENST00000334448 A0A1W2PPQ1 181 aa11.01□□□□□ -0.65
CCDC88C-202ENST00000334448 TMEM189A5PLL7 270 aa11.01□□□□□ -0.65
CCDC88C-202ENST00000334448 RBMY1BA6NDE4 496 aaKnown RBP11.01□□□□□ -0.65
CCDC88C-202ENST00000334448 RBMY1EA6NEQ0 496 aaKnown RBP11.01□□□□□ -0.65
CCDC88C-202ENST00000334448 GPX1P07203 203 aa11.01□□□□□ -0.65
CCDC88C-202ENST00000334448 RBMY1DP0C7P1 496 aaKnown RBP11.01□□□□□ -0.65
CCDC88C-202ENST00000334448 FAM3BP58499 235 aaPredicted RBP11.01□□□□□ -0.65
CCDC88C-202ENST00000334448 ATP5L2Q7Z4Y8 100 aa11.01□□□□□ -0.65
CCDC88C-202ENST00000334448 TRPT1Q86TN4 253 aaKnown RBP11.01□□□□□ -0.65
CCDC88C-202ENST00000334448 C11orf21Q9P2W6 132 aa11.01□□□□□ -0.65
CCDC88C-202ENST00000334448 TRRAPQ9Y4A5 3859 aa11□□□□□ -0.65
CCDC88C-202ENST00000334448 IGKV3D-20A0A0C4DH25 116 aa11□□□□□ -0.65
CCDC88C-202ENST00000334448 C7orf71A4D174 169 aa11□□□□□ -0.65
CCDC88C-202ENST00000334448 HIGD1CA8MV81 97 aa11□□□□□ -0.65
CCDC88C-202ENST00000334448 AMBPP02760 352 aa11□□□□□ -0.65
CCDC88C-202ENST00000334448 IGLC6P0CF74 106 aa11□□□□□ -0.65
CCDC88C-202ENST00000334448 CTRLP40313 264 aa11□□□□□ -0.65
CCDC88C-202ENST00000334448 RPL19P84098 196 aaKnown RBP11□□□□□ -0.65
CCDC88C-202ENST00000334448 TDRG1Q3Y452 100 aa11□□□□□ -0.65
CCDC88C-202ENST00000334448 DNLZQ5SXM8 178 aa11□□□□□ -0.65
CCDC88C-202ENST00000334448 GFI1BQ5VTD9 330 aa11□□□□□ -0.65
CCDC88C-202ENST00000334448 RASL11AQ6T310 242 aa11□□□□□ -0.65
CCDC88C-202ENST00000334448 NUP35Q8NFH5 326 aa11□□□□□ -0.65
CCDC88C-202ENST00000334448 SRD5A3Q9H8P0 318 aa11□□□□□ -0.65
CCDC88C-202ENST00000334448 ZNF324O75467 553 aaPredicted RBP10.99□□□□□ -0.65
CCDC88C-202ENST00000334448 CD7P09564 240 aa10.99□□□□□ -0.65
CCDC88C-202ENST00000334448 ZNF124Q15973 351 aa10.99□□□□□ -0.65
CCDC88C-202ENST00000334448 COX19Q49B96 90 aa10.99□□□□□ -0.65
CCDC88C-202ENST00000334448 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.99□□□□□ -0.65
CCDC88C-202ENST00000334448 C20orf144Q9BQM9 153 aa10.99□□□□□ -0.65
CCDC88C-202ENST00000334448 CNFNQ9BYD5 112 aa10.99□□□□□ -0.65
CCDC88C-202ENST00000334448 A0A1B0GXF2 115 aa10.98□□□□□ -0.65
CCDC88C-202ENST00000334448 CRXO43186 299 aaPredicted RBP10.98□□□□□ -0.65
CCDC88C-202ENST00000334448 ORM1P02763 201 aa10.98□□□□□ -0.65
CCDC88C-202ENST00000334448 RNASE4P34096 147 aaKnown RBP10.98□□□□□ -0.65
CCDC88C-202ENST00000334448 TCL1AP56279 114 aa10.98□□□□□ -0.65
CCDC88C-202ENST00000334448 KIR3DS1Q14943 382 aa10.98□□□□□ -0.65
CCDC88C-202ENST00000334448 PRR31Q5SQ13 230 aa10.98□□□□□ -0.65
CCDC88C-202ENST00000334448 SORL1Q92673 2214 aa10.97□□□□□ -0.65
CCDC88C-202ENST00000334448 MED14OSP0DP75 135 aa10.97□□□□□ -0.65
CCDC88C-202ENST00000334448 IGLL1P15814 213 aa10.97□□□□□ -0.65
CCDC88C-202ENST00000334448 SPINK13Q1W4C9 94 aa10.97□□□□□ -0.65
CCDC88C-202ENST00000334448 STHQ8IWL8 128 aa10.97□□□□□ -0.65
CCDC88C-202ENST00000334448 LINC00467Q9BRT7 94 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms