RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 DEFB136Q30KP8 78 aa12.79□□□□□ -0.36
DDX41-201ENST00000330503 TMEM18Q96B42 140 aa12.79□□□□□ -0.36
DDX41-201ENST00000330503 TPPP3Q9BW30 176 aa12.79□□□□□ -0.36
DDX41-201ENST00000330503 MYO9AB2RTY4 2548 aa12.79□□□□□ -0.36
DDX41-201ENST00000330503 RPS20P60866 119 aaKnown RBP12.78□□□□□ -0.36
DDX41-201ENST00000330503 Q6ZQT7 251 aa12.78□□□□□ -0.36
DDX41-201ENST00000330503 GATD1Q8NB37 220 aa12.78□□□□□ -0.36
DDX41-201ENST00000330503 SMR3AQ99954 134 aa12.78□□□□□ -0.36
DDX41-201ENST00000330503 F6UB75 175 aa12.77□□□□□ -0.36
DDX41-201ENST00000330503 IGLC6P0CF74 106 aa12.77□□□□□ -0.36
DDX41-201ENST00000330503 LINC01559Q495D7 138 aa12.77□□□□□ -0.36
DDX41-201ENST00000330503 HIST2H2BDQ6DRA6 164 aa12.77□□□□□ -0.36
DDX41-201ENST00000330503 CDPF1Q6NVV7 123 aa12.77□□□□□ -0.36
DDX41-201ENST00000330503 ADAMTSL5Q6ZMM2 481 aa12.77□□□□□ -0.36
DDX41-201ENST00000330503 C18orf32Q8TCD1 76 aa12.77□□□□□ -0.36
DDX41-201ENST00000330503 C2orf70A6NJV1 201 aa12.77□□□□□ -0.37
DDX41-201ENST00000330503 SLURP1P55000 103 aa12.77□□□□□ -0.37
DDX41-201ENST00000330503 HIST1H1AQ02539 215 aaPredicted RBP12.77□□□□□ -0.37
DDX41-201ENST00000330503 PRR9Q5T870 116 aa12.77□□□□□ -0.37
DDX41-201ENST00000330503 WFDC3Q8IUB2 231 aa12.77□□□□□ -0.37
DDX41-201ENST00000330503 OR10J6PQ8NGY7 276 aa12.77□□□□□ -0.37
DDX41-201ENST00000330503 RCHY1Q96PM5 261 aa12.77□□□□□ -0.37
DDX41-201ENST00000330503 MS4A6AQ9H2W1 248 aa12.77□□□□□ -0.37
DDX41-201ENST00000330503 NIT2Q9NQR4 276 aa12.77□□□□□ -0.37
DDX41-201ENST00000330503 LENEPQ9Y5L5 61 aa12.77□□□□□ -0.37
DDX41-201ENST00000330503 IGKV3D-20A0A0C4DH25 116 aa12.76□□□□□ -0.37
DDX41-201ENST00000330503 IQCJQ1A5X6 159 aa12.76□□□□□ -0.37
DDX41-201ENST00000330503 OR8A1Q8NGG7 326 aa12.76□□□□□ -0.37
DDX41-201ENST00000330503 C4orf3Q8WVX3 66 aa12.76□□□□□ -0.37
DDX41-201ENST00000330503 FAM19A4Q96LR4 140 aa12.76□□□□□ -0.37
DDX41-201ENST00000330503 CUBNO60494 3623 aa12.75□□□□□ -0.37
DDX41-201ENST00000330503 MUC21A0A0G2JKD1 596 aa12.75□□□□□ -0.37
DDX41-201ENST00000330503 MUC21A0A140T8X8 626 aa12.75□□□□□ -0.37
DDX41-201ENST00000330503 A0A1B0GW15 77 aa12.75□□□□□ -0.37
DDX41-201ENST00000330503 MUC21Q5SSG8 566 aa12.75□□□□□ -0.37
DDX41-201ENST00000330503 ZFAND2AQ8N6M9 145 aa12.75□□□□□ -0.37
DDX41-201ENST00000330503 TMEM160Q9NX00 188 aa12.75□□□□□ -0.37
DDX41-201ENST00000330503 LOC102724200A0A096LPH7 203 aaPredicted RBP12.74□□□□□ -0.37
DDX41-201ENST00000330503 LINC01619G3V211 115 aa12.74□□□□□ -0.37
DDX41-201ENST00000330503 CTRLP40313 264 aa12.74□□□□□ -0.37
DDX41-201ENST00000330503 ID1P41134 155 aa12.74□□□□□ -0.37
DDX41-201ENST00000330503 FER1L6-AS1Q8NA97 138 aa12.74□□□□□ -0.37
DDX41-201ENST00000330503 OR11H1Q8NG94 326 aa12.74□□□□□ -0.37
DDX41-201ENST00000330503 RNASE1P07998 156 aaKnown RBP12.74□□□□□ -0.37
DDX41-201ENST00000330503 SSTP61278 116 aa12.74□□□□□ -0.37
DDX41-201ENST00000330503 DUX3Q96PT4 197 aa12.74□□□□□ -0.37
DDX41-201ENST00000330503 PCP4L1A6NKN8 68 aa12.73□□□□□ -0.37
DDX41-201ENST00000330503 TFPI2P48307 235 aa12.73□□□□□ -0.37
DDX41-201ENST00000330503 PAFAH1B2P68402 229 aa12.73□□□□□ -0.37
DDX41-201ENST00000330503 JOSD1Q15040 202 aaPredicted RBP12.73□□□□□ -0.37
DDX41-201ENST00000330503 SAMD13Q5VXD3 122 aa12.73□□□□□ -0.37
DDX41-201ENST00000330503 ZNF493Q6ZR52 646 aa12.73□□□□□ -0.37
DDX41-201ENST00000330503 OR1N2Q8NGR9 330 aa12.73□□□□□ -0.37
DDX41-201ENST00000330503 BORCS7Q96B45 105 aa12.73□□□□□ -0.37
DDX41-201ENST00000330503 NF1P21359 2839 aa12.73□□□□□ -0.37
DDX41-201ENST00000330503 K7EQG2 157 aa12.73□□□□□ -0.37
DDX41-201ENST00000330503 LY6G6DO95868 133 aa12.71□□□□□ -0.37
DDX41-201ENST00000330503 GPX1P07203 203 aa12.71□□□□□ -0.37
DDX41-201ENST00000330503 KHDC1LQ5JSQ8 128 aa12.71□□□□□ -0.37
DDX41-201ENST00000330503 KLHL30-AS1Q8NEE0 82 aa12.71□□□□□ -0.37
DDX41-201ENST00000330503 DPF1Q92782 380 aa12.71□□□□□ -0.37
DDX41-201ENST00000330503 J3KRW8 73 aa12.71□□□□□ -0.38
DDX41-201ENST00000330503 KIR3DS1Q14943 382 aa12.71□□□□□ -0.38
DDX41-201ENST00000330503 APRG1Q8IVJ8 170 aa12.71□□□□□ -0.38
DDX41-201ENST00000330503 URB1-AS1Q96HZ7 61 aa12.71□□□□□ -0.38
DDX41-201ENST00000330503 KCNS1Q96KK3 526 aa12.71□□□□□ -0.38
DDX41-201ENST00000330503 CNFNQ9BYD5 112 aa12.71□□□□□ -0.38
DDX41-201ENST00000330503 C16orf95Q9H693 158 aa12.71□□□□□ -0.38
DDX41-201ENST00000330503 ZNF688P0C7X2 276 aa12.7□□□□□ -0.38
DDX41-201ENST00000330503 NTF3P20783 257 aa12.7□□□□□ -0.38
DDX41-201ENST00000330503 Q6ZWC4 215 aa12.7□□□□□ -0.38
DDX41-201ENST00000330503 LINC01006Q8NI28 216 aa12.7□□□□□ -0.38
DDX41-201ENST00000330503 MTORP42345 2549 aa12.7□□□□□ -0.38
DDX41-201ENST00000330503 TRBV7-9A0A0J9YWB2 115 aa12.7□□□□□ -0.38
DDX41-201ENST00000330503 CD28P10747 220 aa12.7□□□□□ -0.38
DDX41-201ENST00000330503 SCGB2A2Q13296 93 aa12.7□□□□□ -0.38
DDX41-201ENST00000330503 DNLZQ5SXM8 178 aa12.7□□□□□ -0.38
DDX41-201ENST00000330503 WFDC12Q8WWY7 111 aa12.7□□□□□ -0.38
DDX41-201ENST00000330503 DLX4Q92988 240 aaPredicted RBP12.7□□□□□ -0.38
DDX41-201ENST00000330503 MSRB1Q9NZV6 116 aa12.7□□□□□ -0.38
DDX41-201ENST00000330503 HILS1P60008 231 aa12.69□□□□□ -0.38
DDX41-201ENST00000330503 TWIST1Q15672 202 aa12.69□□□□□ -0.38
DDX41-201ENST00000330503 PSMG4Q5JS54 123 aa12.69□□□□□ -0.38
DDX41-201ENST00000330503 C11orf44Q8N8P7 122 aa12.69□□□□□ -0.38
DDX41-201ENST00000330503 CD33P20138 364 aa12.68□□□□□ -0.38
DDX41-201ENST00000330503 RNASE4P34096 147 aaKnown RBP12.68□□□□□ -0.38
DDX41-201ENST00000330503 FAM104BQ5XKR9 115 aa12.68□□□□□ -0.38
DDX41-201ENST00000330503 NIT1Q86X76 327 aa12.68□□□□□ -0.38
DDX41-201ENST00000330503 OR9G4Q8NGQ1 327 aa12.68□□□□□ -0.38
DDX41-201ENST00000330503 SAMD10Q9BYL1 202 aa12.68□□□□□ -0.38
DDX41-201ENST00000330503 CSN3P07498 182 aa12.68□□□□□ -0.38
DDX41-201ENST00000330503 ZNF418Q8TF45 676 aaPredicted RBP12.68□□□□□ -0.38
DDX41-201ENST00000330503 RAX2Q96IS3 184 aa12.68□□□□□ -0.38
DDX41-201ENST00000330503 GSN-AS1Q9NRJ2 163 aa12.68□□□□□ -0.38
DDX41-201ENST00000330503 TRAV21A0A0B4J279 112 aa12.67□□□□□ -0.38
DDX41-201ENST00000330503 M0QZ24 198 aa12.67□□□□□ -0.38
DDX41-201ENST00000330503 ZNF324O75467 553 aaPredicted RBP12.67□□□□□ -0.38
DDX41-201ENST00000330503 SNRPD3P62318 126 aaKnown RBP12.67□□□□□ -0.38
DDX41-201ENST00000330503 AMN1Q8IY45 258 aa12.67□□□□□ -0.38
DDX41-201ENST00000330503 FAM19A2Q8N3H0 131 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms