RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 C11orf44Q8N8P7 122 aa12.5□□□□□ -0.41
HCFC1-201ENST00000310441 FAM110DQ8TAY7 271 aaPredicted RBP12.5□□□□□ -0.41
HCFC1-201ENST00000310441 IGKV1D-8A0A087WSZ0 117 aa12.49□□□□□ -0.41
HCFC1-201ENST00000310441 Q6P435 159 aa12.49□□□□□ -0.41
HCFC1-201ENST00000310441 J3QLI3 93 aa12.49□□□□□ -0.41
HCFC1-201ENST00000310441 ZMAT4Q9H898 229 aa12.49□□□□□ -0.41
HCFC1-201ENST00000310441 NDUFA4O00483 81 aa12.49□□□□□ -0.41
HCFC1-201ENST00000310441 IGKV1-27A0A075B6S5 117 aa12.49□□□□□ -0.41
HCFC1-201ENST00000310441 PAX9P55771 341 aa12.49□□□□□ -0.41
HCFC1-201ENST00000310441 NDUFB1O75438 58 aa12.48□□□□□ -0.41
HCFC1-201ENST00000310441 KLHDC3Q9BQ90 382 aa12.48□□□□□ -0.41
HCFC1-201ENST00000310441 PRSS29PA6NIE9 313 aa12.48□□□□□ -0.41
HCFC1-201ENST00000310441 DKK1O94907 266 aa12.48□□□□□ -0.41
HCFC1-201ENST00000310441 CFHR2P36980 270 aa12.48□□□□□ -0.41
HCFC1-201ENST00000310441 LINC00473A8K010 186 aa12.48□□□□□ -0.41
HCFC1-201ENST00000310441 ATOX1O00244 68 aa12.48□□□□□ -0.41
HCFC1-201ENST00000310441 TSSC4Q9Y5U2 329 aaPredicted RBP12.48□□□□□ -0.41
HCFC1-201ENST00000310441 ZNF493Q6ZR52 646 aa12.48□□□□□ -0.41
HCFC1-201ENST00000310441 GFI1Q99684 422 aa12.48□□□□□ -0.41
HCFC1-201ENST00000310441 PRB3Q04118 309 aaPredicted RBP12.48□□□□□ -0.41
HCFC1-201ENST00000310441 IL15RAQ13261 267 aa12.48□□□□□ -0.41
HCFC1-201ENST00000310441 ACACBO00763 2458 aa12.48□□□□□ -0.41
HCFC1-201ENST00000310441 TECTAO75443 2155 aa12.47□□□□□ -0.41
HCFC1-201ENST00000310441 C10orf55Q5SWW7 151 aa12.47□□□□□ -0.41
HCFC1-201ENST00000310441 IGKV1-12A0A0C4DH73 117 aa12.47□□□□□ -0.41
HCFC1-201ENST00000310441 IGKV1D-12P01611 117 aa12.47□□□□□ -0.41
HCFC1-201ENST00000310441 IGLC2P0DOY2 106 aa12.47□□□□□ -0.41
HCFC1-201ENST00000310441 IGLC3P0DOY3 106 aa12.47□□□□□ -0.41
HCFC1-201ENST00000310441 POLR3KQ9Y2Y1 108 aaPredicted RBP12.47□□□□□ -0.41
HCFC1-201ENST00000310441 J3QQQ9 107 aa12.47□□□□□ -0.41
HCFC1-201ENST00000310441 SYNJ2BPP57105 145 aa12.47□□□□□ -0.41
HCFC1-201ENST00000310441 GATA4P43694 442 aa12.47□□□□□ -0.41
HCFC1-201ENST00000310441 C8orf86Q6ZUL3 223 aa12.47□□□□□ -0.41
HCFC1-201ENST00000310441 A0A1W2PPI3 338 aa12.46□□□□□ -0.41
HCFC1-201ENST00000310441 IGFBPL1Q8WX77 278 aa12.46□□□□□ -0.41
HCFC1-201ENST00000310441 NDUFA4L2Q9NRX3 87 aa12.46□□□□□ -0.41
HCFC1-201ENST00000310441 MBD3L4A6NDZ8 208 aaPredicted RBP12.46□□□□□ -0.41
HCFC1-201ENST00000310441 MBD3L3A6NE82 208 aaPredicted RBP12.46□□□□□ -0.41
HCFC1-201ENST00000310441 MBD3L5A6NJ08 208 aaPredicted RBP12.46□□□□□ -0.41
HCFC1-201ENST00000310441 MBD3L2Q8NHZ7 208 aaPredicted RBP12.46□□□□□ -0.41
HCFC1-201ENST00000310441 TRBV19A0A075B6N1 114 aa12.46□□□□□ -0.41
HCFC1-201ENST00000310441 PNRC2Q9NPJ4 139 aaKnown RBP12.46□□□□□ -0.41
HCFC1-201ENST00000310441 MRPL51Q4U2R6 128 aaKnown RBP12.46□□□□□ -0.42
HCFC1-201ENST00000310441 TRAV3A0A0B4J244 114 aa12.46□□□□□ -0.42
HCFC1-201ENST00000310441 SLC25A29Q8N8R3 303 aa12.46□□□□□ -0.42
HCFC1-201ENST00000310441 DEFB131AP59861 70 aa12.45□□□□□ -0.42
HCFC1-201ENST00000310441 CCDC168Q8NDH2 2452 aa12.45□□□□□ -0.42
HCFC1-201ENST00000310441 SEC61GP60059 68 aa12.45□□□□□ -0.42
HCFC1-201ENST00000310441 RBAKDNA6NC62 111 aa12.45□□□□□ -0.42
HCFC1-201ENST00000310441 LYNX1G3V0Z9 82 aa12.45□□□□□ -0.42
HCFC1-201ENST00000310441 LYNX1P0DP58 116 aa12.45□□□□□ -0.42
HCFC1-201ENST00000310441 UBE2BP63146 152 aa12.45□□□□□ -0.42
HCFC1-201ENST00000310441 C5orf47Q569G3 176 aa12.45□□□□□ -0.42
HCFC1-201ENST00000310441 SVIPQ8NHG7 77 aa12.45□□□□□ -0.42
HCFC1-201ENST00000310441 LINC00527Q9UJ94 153 aa12.45□□□□□ -0.42
HCFC1-201ENST00000310441 OVOL3O00110 214 aa12.45□□□□□ -0.42
HCFC1-201ENST00000310441 TRAV12-1A0A0B4J245 112 aa12.45□□□□□ -0.42
HCFC1-201ENST00000310441 A0A0G2JNJ9 132 aa12.44□□□□□ -0.42
HCFC1-201ENST00000310441 Q9UFV3 132 aa12.44□□□□□ -0.42
HCFC1-201ENST00000310441 MSMBP08118 114 aa12.44□□□□□ -0.42
HCFC1-201ENST00000310441 QRFPP83859 136 aa12.44□□□□□ -0.42
HCFC1-201ENST00000310441 ETDBQ3ZM63 59 aa12.44□□□□□ -0.42
HCFC1-201ENST00000310441 LENEPQ9Y5L5 61 aa12.44□□□□□ -0.42
HCFC1-201ENST00000310441 DOPEY1Q5JWR5 2465 aa12.44□□□□□ -0.42
HCFC1-201ENST00000310441 H0YGX0 51 aa12.44□□□□□ -0.42
HCFC1-201ENST00000310441 H3BUA1 57 aa12.44□□□□□ -0.42
HCFC1-201ENST00000310441 LYPD3O95274 346 aa12.44□□□□□ -0.42
HCFC1-201ENST00000310441 SPINK13Q1W4C9 94 aa12.44□□□□□ -0.42
HCFC1-201ENST00000310441 ZNF833PQ6ZTB9 187 aa12.44□□□□□ -0.42
HCFC1-201ENST00000310441 ANGP03950 147 aaKnown RBP12.44□□□□□ -0.42
HCFC1-201ENST00000310441 GAS1P54826 345 aa12.44□□□□□ -0.42
HCFC1-201ENST00000310441 EPOPA6NHQ4 379 aa12.44□□□□□ -0.42
HCFC1-201ENST00000310441 DKK4Q9UBT3 224 aa12.44□□□□□ -0.42
HCFC1-201ENST00000310441 IGKV1-16P04430 117 aa12.43□□□□□ -0.42
HCFC1-201ENST00000310441 IGKV1D-17A0A075B6S4 117 aa12.43□□□□□ -0.42
HCFC1-201ENST00000310441 J3KT08 172 aa12.43□□□□□ -0.42
HCFC1-201ENST00000310441 CRYBA4P53673 196 aa12.43□□□□□ -0.42
HCFC1-201ENST00000310441 C9JQL5 133 aa12.43□□□□□ -0.42
HCFC1-201ENST00000310441 CUL9Q8IWT3 2517 aa12.43□□□□□ -0.42
HCFC1-201ENST00000310441 MST1LQ2TV78 715 aa12.43□□□□□ -0.42
HCFC1-201ENST00000310441 FGFBP3Q8TAT2 258 aa12.42□□□□□ -0.42
HCFC1-201ENST00000310441 C8orf49Q96NF6 230 aa12.42□□□□□ -0.42
HCFC1-201ENST00000310441 C5orf63A6NC05 138 aa12.42□□□□□ -0.42
HCFC1-201ENST00000310441 Q8TCH9 128 aa12.42□□□□□ -0.42
HCFC1-201ENST00000310441 PRR25Q96S07 402 aa12.42□□□□□ -0.42
HCFC1-201ENST00000310441 CACNA1AO00555 2505 aa12.42□□□□□ -0.42
HCFC1-201ENST00000310441 NPYP01303 97 aa12.42□□□□□ -0.42
HCFC1-201ENST00000310441 MUC6Q6W4X9 2439 aa12.42□□□□□ -0.42
HCFC1-201ENST00000310441 MRPL53Q96EL3 112 aaKnown RBP12.42□□□□□ -0.42
HCFC1-201ENST00000310441 BRD3OSQ6XYD6 125 aa12.41□□□□□ -0.42
HCFC1-201ENST00000310441 SIGLEC8Q9NYZ4 499 aa12.41□□□□□ -0.42
HCFC1-201ENST00000310441 XCL2Q9UBD3 114 aa12.41□□□□□ -0.42
HCFC1-201ENST00000310441 FLVCR1-AS1Q8TAF5 88 aa12.41□□□□□ -0.42
HCFC1-201ENST00000310441 HIVEP2P31629 2446 aa12.41□□□□□ -0.42
HCFC1-201ENST00000310441 FOXI2Q6ZQN5 318 aa12.41□□□□□ -0.42
HCFC1-201ENST00000310441 ATP5G1P05496 136 aa12.4□□□□□ -0.42
HCFC1-201ENST00000310441 KNCNA6PVL3 124 aa12.4□□□□□ -0.42
HCFC1-201ENST00000310441 ABCA2Q9BZC7 2435 aa12.4□□□□□ -0.42
HCFC1-201ENST00000310441 DAZ2Q13117 558 aaKnown RBP12.4□□□□□ -0.42
HCFC1-201ENST00000310441 DAZ4Q86SG3 579 aaKnown RBP12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 134.1 ms