RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 NDUFA12Q9UI09 145 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 TRAV13-2A0A0B4J235 113 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 C17orf98A8MV24 154 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 CCL25O15444 150 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 PSPNO60542 156 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 CTSBP07858 339 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 TFF3Q07654 80 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 ITLN1Q8WWA0 313 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 TM2D2Q9BX73 214 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 NPIPB5A8MRT5 1133 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 COL8A2P25067 703 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 ZNF329Q86UD4 541 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 SDHAF1A6NFY7 115 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 JMJD7-PLA2G4BH0Y9G9 81 aa4.26□□□□□ -1.73
SCN1A-201ENST00000303395 PRB3Q04118 309 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-201ENST00000303395 HS3ST6Q96QI5 342 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 NDUFC2-KCTD14E9PQ53 114 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 MCRIP2Q9BUT9 160 aaKnown RBP4.25□□□□□ -1.73
SCN1A-201ENST00000303395 SCRT1Q9BWW7 348 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 IGKV1D-13A0A0B4J2D9 117 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 NTN3O00634 580 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-201ENST00000303395 SAA2P0DJI9 122 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-201ENST00000303395 IGKV1-13P0DP09 117 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 FOXI2Q6ZQN5 318 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 MIR17HGQ75NE6 70 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 PPP1R32Q7Z5V6 425 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 TRPT1Q86TN4 253 aaKnown RBP4.25□□□□□ -1.73
SCN1A-201ENST00000303395 SPACA3Q8IXA5 215 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 ZNF747Q9BV97 191 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 VSIRQ9H7M9 311 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 NDUFA4L2Q9NRX3 87 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 ANAPC1Q9H1A4 1944 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 H3BTX0 84 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 CXCL5P42830 114 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 FOXF2Q12947 444 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 ALPK3Q96L96 1907 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 F6UB75 175 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 RS1O15537 224 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 RNASE2P10153 161 aaKnown RBP4.25□□□□□ -1.73
SCN1A-201ENST00000303395 MAJINQ3KP22 176 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 ARTNQ5T4W7 220 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 STPG1Q5TH74 334 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 ADAMTSL5Q6ZMM2 481 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 LYRM9A8MSI8 78 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 PATE4P0C8F1 98 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 CTRLP40313 264 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 FOXG1P55316 489 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-201ENST00000303395 TEX36Q5VZQ5 186 aa4.25□□□□□ -1.73
SCN1A-201ENST00000303395 TRAV13-1A0A0B4J241 112 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 TIRAPP58753 221 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 SPTSSBQ8NFR3 76 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 ODF3Q96PU9 254 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 ETDCA0A1B0GVM5 59 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 ZNF833PQ6ZTB9 187 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 KLHL30-AS1Q8NEE0 82 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 DEFB130BP0DP73 79 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 DEFB130AP0DP74 79 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 C1QL2Q7Z5L3 287 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 DEFB105AQ8NG35 78 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 IGHV3-73A0A0B4J1V6 119 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 MUC21A0A0G2JKD1 596 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 MUC21A0A140T8X8 626 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 TMEM178BH3BS89 294 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 TAX1BP3O14907 124 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 IGHV3-11P01762 117 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 P0C879 139 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 IGLC1P0CG04 106 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 UBE2AP49459 152 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 STPG4Q8N801 248 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 DEPPQ9NTK1 212 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 D6R8Y8 96 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 ZNF876PQ49A33 203 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 CEND1Q8N111 149 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 LYZL4Q96KX0 146 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 TRBV19A0A075B6N1 114 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 C17orf100A8MU93 164 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 HRKO00198 91 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 PRYO14603 147 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 ZC2HC1BQ5TFG8 222 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 IGHV1-3A0A0C4DH29 117 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 IGLL5B9A064 214 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 G3V4G9 280 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 TIMM17BO60830 172 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 RPL18AQ02543 176 aaKnown RBP4.24□□□□□ -1.73
SCN1A-201ENST00000303395 TGIF1Q15583 401 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 IGF2-ASQ6U949 168 aa4.24□□□□□ -1.73
SCN1A-201ENST00000303395 PPDPFQ9H3Y8 114 aa4.23□□□□□ -1.73
SCN1A-201ENST00000303395 SERP1Q9Y6X1 66 aa4.23□□□□□ -1.73
SCN1A-201ENST00000303395 ZFYVE26Q68DK2 2539 aa4.23□□□□□ -1.73
SCN1A-201ENST00000303395 LRRK2Q5S007 2527 aa4.23□□□□□ -1.73
SCN1A-201ENST00000303395 BCE1O60756 84 aa4.23□□□□□ -1.73
SCN1A-201ENST00000303395 PRR4Q16378 134 aa4.23□□□□□ -1.73
SCN1A-201ENST00000303395 ST6GALNAC6Q969X2 333 aa4.23□□□□□ -1.73
SCN1A-201ENST00000303395 TMEM213A2RRL7 107 aa4.23□□□□□ -1.73
SCN1A-201ENST00000303395 C9JAW5 83 aa4.23□□□□□ -1.73
SCN1A-201ENST00000303395 IGHV1-69P01742 117 aa4.23□□□□□ -1.73
SCN1A-201ENST00000303395 FOXL2P58012 376 aa4.23□□□□□ -1.73
SCN1A-201ENST00000303395 IGHV3-48P01763 117 aa4.23□□□□□ -1.73
SCN1A-201ENST00000303395 PSG7Q13046 419 aa4.23□□□□□ -1.73
SCN1A-201ENST00000303395 SH2D6Q7Z4S9 175 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms