RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 VMO1Q7Z5L0 202 aa7.97□□□□□ -1.13
COL6A3-201ENST00000295550 LIME1Q9H400 295 aa7.97□□□□□ -1.13
COL6A3-201ENST00000295550 C15orf53Q8NAA6 179 aa7.97□□□□□ -1.13
COL6A3-201ENST00000295550 NTF4P34130 210 aa7.97□□□□□ -1.13
COL6A3-201ENST00000295550 SYNJ2BPP57105 145 aa7.97□□□□□ -1.13
COL6A3-201ENST00000295550 SCRT2Q9NQ03 307 aa7.97□□□□□ -1.13
COL6A3-201ENST00000295550 IGHG2P01859 326 aa7.97□□□□□ -1.13
COL6A3-201ENST00000295550 Q6ZRM9 215 aa7.97□□□□□ -1.13
COL6A3-201ENST00000295550 TMEM105Q8N8V8 129 aa7.97□□□□□ -1.13
COL6A3-201ENST00000295550 LY6G6EA0A0G2JKS1 128 aa7.96□□□□□ -1.13
COL6A3-201ENST00000295550 TINCRA0A1B0GVN0 87 aa7.96□□□□□ -1.13
COL6A3-201ENST00000295550 U3KQA8 63 aa7.96□□□□□ -1.13
COL6A3-201ENST00000295550 H0YJW9 148 aa7.96□□□□□ -1.13
COL6A3-201ENST00000295550 IGHV2-5P01817 119 aa7.96□□□□□ -1.13
COL6A3-201ENST00000295550 PTPRSQ13332 1948 aa7.96□□□□□ -1.13
COL6A3-201ENST00000295550 PFN2P35080 140 aa7.96□□□□□ -1.14
COL6A3-201ENST00000295550 IL15RAQ13261 267 aa7.96□□□□□ -1.14
COL6A3-201ENST00000295550 Q8N8P6 123 aa7.96□□□□□ -1.14
COL6A3-201ENST00000295550 SRSF8Q9BRL6 282 aaKnown RBP7.96□□□□□ -1.14
COL6A3-201ENST00000295550 SMIM20Q8N5G0 67 aa7.96□□□□□ -1.14
COL6A3-201ENST00000295550 MSRB2Q9Y3D2 182 aa7.96□□□□□ -1.14
COL6A3-201ENST00000295550 TMEM213A2RRL7 107 aa7.96□□□□□ -1.14
COL6A3-201ENST00000295550 PRSS46E5RG02 174 aa7.96□□□□□ -1.14
COL6A3-201ENST00000295550 ZNF561-AS1K7EIQ3 104 aa7.96□□□□□ -1.14
COL6A3-201ENST00000295550 IGHV1-3A0A0C4DH29 117 aa7.95□□□□□ -1.14
COL6A3-201ENST00000295550 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.95□□□□□ -1.14
COL6A3-201ENST00000295550 CRYBA4P53673 196 aa7.95□□□□□ -1.14
COL6A3-201ENST00000295550 ZNF492Q9P255 531 aa7.95□□□□□ -1.14
COL6A3-201ENST00000295550 WIPF3A6NGB9 483 aa7.95□□□□□ -1.14
COL6A3-201ENST00000295550 IGKV1D-17A0A075B6S4 117 aa7.95□□□□□ -1.14
COL6A3-201ENST00000295550 LINC00479Q96M42 142 aa7.95□□□□□ -1.14
COL6A3-201ENST00000295550 SHANK2-AS3Q9BTD1 123 aa7.95□□□□□ -1.14
COL6A3-201ENST00000295550 C5orf64Q2M2E5 130 aa7.95□□□□□ -1.14
COL6A3-201ENST00000295550 NDUFA12Q9UI09 145 aa7.95□□□□□ -1.14
COL6A3-201ENST00000295550 KLRD1Q13241 179 aa7.95□□□□□ -1.14
COL6A3-201ENST00000295550 IGFL4Q6B9Z1 124 aa7.95□□□□□ -1.14
COL6A3-201ENST00000295550 ZFHX2Q9C0A1 2572 aaPredicted RBP7.95□□□□□ -1.14
COL6A3-201ENST00000295550 FAM223BA6NKX1 122 aa7.95□□□□□ -1.14
COL6A3-201ENST00000295550 DKK1O94907 266 aa7.95□□□□□ -1.14
COL6A3-201ENST00000295550 CEACAM8P31997 349 aaPredicted RBP7.95□□□□□ -1.14
COL6A3-201ENST00000295550 POU2AF1Q16633 256 aa7.95□□□□□ -1.14
COL6A3-201ENST00000295550 FAM223AQ8IWN6 122 aa7.95□□□□□ -1.14
COL6A3-201ENST00000295550 USMG5Q96IX5 58 aa7.95□□□□□ -1.14
COL6A3-201ENST00000295550 CD59P13987 128 aa7.95□□□□□ -1.14
COL6A3-201ENST00000295550 MRPL51Q4U2R6 128 aaKnown RBP7.95□□□□□ -1.14
COL6A3-201ENST00000295550 TLN1Q9Y490 2541 aaKnown RBP7.94□□□□□ -1.14
COL6A3-201ENST00000295550 IGHV1-8P0DP01 117 aa7.94□□□□□ -1.14
COL6A3-201ENST00000295550 TMEM14BQ9NUH8 114 aa7.94□□□□□ -1.14
COL6A3-201ENST00000295550 PROK2Q9HC23 129 aa7.94□□□□□ -1.14
COL6A3-201ENST00000295550 LINC00527Q9UJ94 153 aa7.94□□□□□ -1.14
COL6A3-201ENST00000295550 METRNQ9UJH8 293 aa7.94□□□□□ -1.14
COL6A3-201ENST00000295550 PFN1P07737 140 aaKnown RBP7.94□□□□□ -1.14
COL6A3-201ENST00000295550 FAM104BQ5XKR9 115 aa7.94□□□□□ -1.14
COL6A3-201ENST00000295550 TMEM200BQ69YZ2 307 aa7.94□□□□□ -1.14
COL6A3-201ENST00000295550 GAFA1Q96PS6 74 aa7.94□□□□□ -1.14
COL6A3-201ENST00000295550 C11orf44Q8N8P7 122 aa7.94□□□□□ -1.14
COL6A3-201ENST00000295550 SMIM27A0A1W2PRY6 76 aa7.94□□□□□ -1.14
COL6A3-201ENST00000295550 HLA-DRB4P13762 266 aa7.94□□□□□ -1.14
COL6A3-201ENST00000295550 C5orf24Q7Z6I8 188 aa7.94□□□□□ -1.14
COL6A3-201ENST00000295550 HLA-DRB4X5D2U9 266 aa7.94□□□□□ -1.14
COL6A3-201ENST00000295550 FN1P02751 2386 aaKnown RBP7.94□□□□□ -1.14
COL6A3-201ENST00000295550 C2orf66Q6UXQ4 117 aa7.94□□□□□ -1.14
COL6A3-201ENST00000295550 TRBV25-1A0A075B6N4 114 aa7.94□□□□□ -1.14
COL6A3-201ENST00000295550 DEFB130BP0DP73 79 aa7.94□□□□□ -1.14
COL6A3-201ENST00000295550 DEFB130AP0DP74 79 aa7.94□□□□□ -1.14
COL6A3-201ENST00000295550 KLF2Q9Y5W3 355 aaPredicted RBP7.94□□□□□ -1.14
COL6A3-201ENST00000295550 TRAV26-2A0A0B4J265 109 aa7.93□□□□□ -1.14
COL6A3-201ENST00000295550 LMO1P25800 156 aa7.93□□□□□ -1.14
COL6A3-201ENST00000295550 ZCCHC24Q8N2G6 241 aaKnown RBP7.93□□□□□ -1.14
COL6A3-201ENST00000295550 PAX9P55771 341 aa7.93□□□□□ -1.14
COL6A3-201ENST00000295550 HS3ST6Q96QI5 342 aa7.93□□□□□ -1.14
COL6A3-201ENST00000295550 RNASE6Q93091 150 aaKnown RBP7.93□□□□□ -1.14
COL6A3-201ENST00000295550 RNASE2P10153 161 aaKnown RBP7.93□□□□□ -1.14
COL6A3-201ENST00000295550 CYYR1Q96J86 154 aa7.93□□□□□ -1.14
COL6A3-201ENST00000295550 SIGLEC8Q9NYZ4 499 aa7.93□□□□□ -1.14
COL6A3-201ENST00000295550 GATA4P43694 442 aa7.93□□□□□ -1.14
COL6A3-201ENST00000295550 COL5A1P20908 1838 aaPredicted RBP7.93□□□□□ -1.14
COL6A3-201ENST00000295550 LYNX1G3V0Z9 82 aa7.93□□□□□ -1.14
COL6A3-201ENST00000295550 LYNX1P0DP58 116 aa7.93□□□□□ -1.14
COL6A3-201ENST00000295550 AMTNQ6UX39 209 aa7.93□□□□□ -1.14
COL6A3-201ENST00000295550 UBE2E2Q96LR5 201 aa7.92□□□□□ -1.14
COL6A3-201ENST00000295550 RHODO00212 210 aa7.92□□□□□ -1.14
COL6A3-201ENST00000295550 RNF5Q99942 180 aa7.92□□□□□ -1.14
COL6A3-201ENST00000295550 WFDC9Q8NEX5 89 aa7.92□□□□□ -1.14
COL6A3-201ENST00000295550 CHKB-CPT1BH3BT56 60 aa7.92□□□□□ -1.14
COL6A3-201ENST00000295550 PRB2P02812 416 aaPredicted RBP7.92□□□□□ -1.14
COL6A3-201ENST00000295550 ZNF726P1Q15940 193 aa7.92□□□□□ -1.14
COL6A3-201ENST00000295550 TAL2Q16559 108 aa7.92□□□□□ -1.14
COL6A3-201ENST00000295550 DAZ1Q9NQZ3 744 aaKnown RBP7.92□□□□□ -1.14
COL6A3-201ENST00000295550 IGLL1P15814 213 aa7.92□□□□□ -1.14
COL6A3-201ENST00000295550 RSPO1Q2MKA7 263 aaPredicted RBP7.92□□□□□ -1.14
COL6A3-201ENST00000295550 KRTAP27-1Q3LI81 207 aa7.92□□□□□ -1.14
COL6A3-201ENST00000295550 J3QQQ9 107 aa7.92□□□□□ -1.14
COL6A3-201ENST00000295550 RAI1Q7Z5J4 1906 aaPredicted RBP7.92□□□□□ -1.14
COL6A3-201ENST00000295550 KLHL30-AS1Q8NEE0 82 aa7.92□□□□□ -1.14
COL6A3-201ENST00000295550 CFHR4Q92496 578 aa7.92□□□□□ -1.14
COL6A3-201ENST00000295550 SIGLEC9Q9Y336 463 aa7.92□□□□□ -1.14
COL6A3-201ENST00000295550 F8VRH5 84 aa7.91□□□□□ -1.14
COL6A3-201ENST00000295550 CCL25O15444 150 aa7.91□□□□□ -1.14
COL6A3-201ENST00000295550 PIP4P2Q8N4L2 257 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms