RNA–Protein interactions for RNA: ENST00000263856.8

CHMP3-201, Transcript of charged multivesicular body protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP3, Length 3,171 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-201ENST00000263856 U3KQK5 164 aa9.6□□□□□ -0.87
CHMP3-201ENST00000263856 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.59□□□□□ -0.874e-7■■■■□ 26.6
CHMP3-201ENST00000263856 H3BVH4 76 aa9.59□□□□□ -0.87
CHMP3-201ENST00000263856 GOSR1O95249 250 aa9.59□□□□□ -0.87
CHMP3-201ENST00000263856 IGHG4P01861 327 aa9.59□□□□□ -0.87
CHMP3-201ENST00000263856 IGLC6P0CF74 106 aa9.59□□□□□ -0.87
CHMP3-201ENST00000263856 DEFB1P60022 68 aa9.59□□□□□ -0.87
CHMP3-201ENST00000263856 RPL11P62913 178 aaKnown RBP9.59□□□□□ -0.87
CHMP3-201ENST00000263856 GATD1Q8NB37 220 aa9.59□□□□□ -0.87
CHMP3-201ENST00000263856 SRSF8Q9BRL6 282 aaKnown RBP9.59□□□□□ -0.87
CHMP3-201ENST00000263856 CSTL1Q9H114 145 aa9.59□□□□□ -0.87
CHMP3-201ENST00000263856 MRPL35Q9NZE8 188 aaKnown RBP9.59□□□□□ -0.87
CHMP3-201ENST00000263856 M0R381 172 aa9.59□□□□□ -0.87
CHMP3-201ENST00000263856 ODF1Q14990 250 aa9.59□□□□□ -0.87
CHMP3-201ENST00000263856 TMEM78Q5T7P6 136 aa9.59□□□□□ -0.87
CHMP3-201ENST00000263856 SPG11Q96JI7 2443 aa9.59□□□□□ -0.87
CHMP3-201ENST00000263856 IGHV7-81A0A0B4J1V7 117 aa9.59□□□□□ -0.87
CHMP3-201ENST00000263856 SMIM17P0DL12 118 aa9.59□□□□□ -0.87
CHMP3-201ENST00000263856 SFTA2Q6UW10 78 aa9.59□□□□□ -0.87
CHMP3-201ENST00000263856 NPBQ8NG41 125 aa9.59□□□□□ -0.87
CHMP3-201ENST00000263856 LINC01548A6NM66 108 aa9.58□□□□□ -0.88
CHMP3-201ENST00000263856 ATP6V0E1O15342 81 aa9.58□□□□□ -0.88
CHMP3-201ENST00000263856 IGF2-ASQ6U949 168 aa9.58□□□□□ -0.88
CHMP3-201ENST00000263856 MYOZ3Q8TDC0 251 aa9.58□□□□□ -0.88
CHMP3-201ENST00000263856 C11orf21Q9P2W6 132 aa9.58□□□□□ -0.88
CHMP3-201ENST00000263856 PRTN3P24158 256 aa9.58□□□□□ -0.88
CHMP3-201ENST00000263856 CCDC144NLQ6NUI1 221 aa9.58□□□□□ -0.88
CHMP3-201ENST00000263856 UFSP1Q6NVU6 142 aa9.58□□□□□ -0.88
CHMP3-201ENST00000263856 TMEM219Q86XT9 240 aa9.58□□□□□ -0.88
CHMP3-201ENST00000263856 ARL6IP6Q8N6S5 226 aa9.58□□□□□ -0.88
CHMP3-201ENST00000263856 OR11H6Q8NGC7 330 aa9.58□□□□□ -0.88
CHMP3-201ENST00000263856 AGPAT4-IT1Q9H0P7 198 aa9.58□□□□□ -0.88
CHMP3-201ENST00000263856 TRBV25-1A0A075B6N4 114 aa9.57□□□□□ -0.88
CHMP3-201ENST00000263856 IGKV3D-20A0A0C4DH25 116 aa9.57□□□□□ -0.88
CHMP3-201ENST00000263856 DPM2O94777 84 aa9.57□□□□□ -0.88
CHMP3-201ENST00000263856 TTC9CQ8N5M4 171 aa9.57□□□□□ -0.88
CHMP3-201ENST00000263856 NXT2Q9NPJ8 142 aaKnown RBP9.57□□□□□ -0.88
CHMP3-201ENST00000263856 GLMPQ8WWB7 406 aa9.57□□□□□ -0.88
CHMP3-201ENST00000263856 VKORC1Q9BQB6 163 aa9.57□□□□□ -0.88
CHMP3-201ENST00000263856 MGPP08493 103 aa9.57□□□□□ -0.88
CHMP3-201ENST00000263856 ZFP36P26651 326 aaKnown RBP9.57□□□□□ -0.88
CHMP3-201ENST00000263856 SCGB2A2Q13296 93 aa9.57□□□□□ -0.88
CHMP3-201ENST00000263856 AMTNQ6UX39 209 aa9.57□□□□□ -0.88
CHMP3-201ENST00000263856 HIST1H4GQ99525 98 aa9.57□□□□□ -0.88
CHMP3-201ENST00000263856 S100A4P26447 101 aaKnown RBP9.56□□□□□ -0.88
CHMP3-201ENST00000263856 C16orf92Q96LL3 132 aa9.56□□□□□ -0.88
CHMP3-201ENST00000263856 PAX8Q06710 450 aa9.56□□□□□ -0.88
CHMP3-201ENST00000263856 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.56□□□□□ -0.88
CHMP3-201ENST00000263856 LY6G5BQ8NDX9 201 aa9.56□□□□□ -0.88
CHMP3-201ENST00000263856 DPF1Q92782 380 aa9.56□□□□□ -0.88
CHMP3-201ENST00000263856 TEX48A0A1B0GUV7 120 aa9.55□□□□□ -0.88
CHMP3-201ENST00000263856 IGF1P05019 195 aa9.55□□□□□ -0.88
CHMP3-201ENST00000263856 MAPKAPK5-AS1Q8N8E1 139 aa9.55□□□□□ -0.88
CHMP3-201ENST00000263856 NPFFR1Q9GZQ6 430 aa9.55□□□□□ -0.88
CHMP3-201ENST00000263856 BUB3O43684 328 aa9.55□□□□□ -0.88
CHMP3-201ENST00000263856 Q8N9W7 124 aa9.55□□□□□ -0.88
CHMP3-201ENST00000263856 WFDC12Q8WWY7 111 aa9.55□□□□□ -0.88
CHMP3-201ENST00000263856 HHLA3Q9XRX5 114 aa9.55□□□□□ -0.88
CHMP3-201ENST00000263856 NCOR2Q9Y618 2525 aa9.54□□□□□ -0.88
CHMP3-201ENST00000263856 ODF3BA8MYP8 253 aa9.54□□□□□ -0.88
CHMP3-201ENST00000263856 LAGE3Q14657 143 aa9.54□□□□□ -0.88
CHMP3-201ENST00000263856 ZNF575Q86XF7 245 aa9.54□□□□□ -0.88
CHMP3-201ENST00000263856 METTL26Q96S19 204 aa9.54□□□□□ -0.88
CHMP3-201ENST00000263856 GTSF1LQ9H1H1 148 aa9.54□□□□□ -0.88
CHMP3-201ENST00000263856 SIVA1O15304 175 aa9.53□□□□□ -0.88
CHMP3-201ENST00000263856 C8orf86Q6ZUL3 223 aa9.53□□□□□ -0.88
CHMP3-201ENST00000263856 NEGR1Q7Z3B1 354 aa9.53□□□□□ -0.88
CHMP3-201ENST00000263856 Q8N8P6 123 aa9.53□□□□□ -0.88
CHMP3-201ENST00000263856 OR5A1Q8NGJ0 315 aa9.53□□□□□ -0.88
CHMP3-201ENST00000263856 G3V4G9 280 aa9.53□□□□□ -0.88
CHMP3-201ENST00000263856 H3BMG7 143 aa9.53□□□□□ -0.88
CHMP3-201ENST00000263856 M0R1W7 72 aa9.53□□□□□ -0.88
CHMP3-201ENST00000263856 EMP1P54849 157 aa9.53□□□□□ -0.88
CHMP3-201ENST00000263856 UBTD1Q9HAC8 227 aa9.53□□□□□ -0.88
CHMP3-201ENST00000263856 MSRB2Q9Y3D2 182 aa9.53□□□□□ -0.88
CHMP3-201ENST00000263856 SORL1Q92673 2214 aa9.53□□□□□ -0.88
CHMP3-201ENST00000263856 HIVEP3Q5T1R4 2406 aa9.53□□□□□ -0.88
CHMP3-201ENST00000263856 DOPEY2Q9Y3R5 2298 aa9.53□□□□□ -0.88
CHMP3-201ENST00000263856 SAA4P35542 130 aa9.53□□□□□ -0.88
CHMP3-201ENST00000263856 CYSLTR1Q9Y271 337 aa9.53□□□□□ -0.88
CHMP3-201ENST00000263856 ATP5LO75964 103 aa9.52□□□□□ -0.89
CHMP3-201ENST00000263856 IGHV3-11P01762 117 aa9.52□□□□□ -0.89
CHMP3-201ENST00000263856 TCF15Q12870 199 aa9.52□□□□□ -0.89
CHMP3-201ENST00000263856 LINC01559Q495D7 138 aa9.52□□□□□ -0.89
CHMP3-201ENST00000263856 C14orf178Q8N769 122 aaPredicted RBP9.52□□□□□ -0.89
CHMP3-201ENST00000263856 ZNF502Q8TBZ5 544 aa9.52□□□□□ -0.89
CHMP3-201ENST00000263856 ZNF479Q96JC4 524 aa9.52□□□□□ -0.89
CHMP3-201ENST00000263856 SRD5A1P18405 259 aa9.52□□□□□ -0.89
CHMP3-201ENST00000263856 SH2D6Q7Z4S9 175 aa9.52□□□□□ -0.89
CHMP3-201ENST00000263856 CEND1Q8N111 149 aa9.52□□□□□ -0.89
CHMP3-201ENST00000263856 CCDC140Q96MF4 163 aa9.52□□□□□ -0.89
CHMP3-201ENST00000263856 CHD8Q9HCK8 2581 aa9.51□□□□□ -0.89
CHMP3-201ENST00000263856 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.51□□□□□ -0.89
CHMP3-201ENST00000263856 SMAGPQ0VAQ4 97 aa9.51□□□□□ -0.89
CHMP3-201ENST00000263856 WFDC2Q14508 124 aa9.51□□□□□ -0.89
CHMP3-201ENST00000263856 RPL39LQ96EH5 51 aaKnown RBP9.51□□□□□ -0.89
CHMP3-201ENST00000263856 ZFAND3Q9H8U3 227 aa9.51□□□□□ -0.89
CHMP3-201ENST00000263856 TMEM238C9JI98 176 aa9.51□□□□□ -0.89
CHMP3-201ENST00000263856 PRR9Q5T870 116 aa9.51□□□□□ -0.89
CHMP3-201ENST00000263856 SCGB3A1Q96QR1 104 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms