RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 MP68P56378 58 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 NANOS3P60323 173 aaKnown RBP4.04□□□□□ -1.76
SCN1A-218ENST00000640036 LINC00518Q8N0U6 118 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 A0A1B0GWJ7 208 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 P2RY4P51582 365 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 G3V318 75 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 DDTP30046 118 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 NKAPP1Q8N9T2 125 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 OR11H7Q8NGC8 314 aa4.04□□□□□ -1.76
SCN1A-218ENST00000640036 C17orf98A8MV24 154 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 TRACP01848 142 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 PCP4P48539 62 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 MMP23AO75900 390 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 HLA-DQB1P01920 261 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 AZU1P20160 251 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 CBLN1P23435 193 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 TRBV5-3A0A0A0MS03 114 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 IGLV2-23P01705 113 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 HOXB4P17483 251 aaPredicted RBP4.03□□□□□ -1.76
SCN1A-218ENST00000640036 SAMD5Q5TGI4 173 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 KIR2DL5BQ8NHK3 375 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 GPR146Q96CH1 333 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 MYMXA0A1B0GTQ4 84 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 IGKV1D-12P01611 117 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 C1QCP02747 245 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 FUSP35637 526 aaKnown RBP eCLIP4.03□□□□□ -1.76
SCN1A-218ENST00000640036 NFE4Q86UQ8 179 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 CD177Q8N6Q3 437 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 PLPPR1Q8TBJ4 325 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 A0A1B0GV90 55 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 NUPR2A6NF83 97 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 H0YJW9 148 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 IGLL1P15814 213 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 C6orf226Q5I0X4 101 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 KLK15Q9H2R5 256 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 PAX9P55771 341 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 HSD52Q0P140 79 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 DEFB135Q30KP9 77 aa4.03□□□□□ -1.76
SCN1A-218ENST00000640036 A0A0A6YYD4 124 aa4.03□□□□□ -1.77
SCN1A-218ENST00000640036 SUPT4H1P63272 117 aaKnown RBP4.03□□□□□ -1.77
SCN1A-218ENST00000640036 Q6ZNX1 250 aa4.03□□□□□ -1.77
SCN1A-218ENST00000640036 TM2D1Q9BX74 207 aa4.03□□□□□ -1.77
SCN1A-218ENST00000640036 F11RQ9Y624 299 aaKnown RBP4.03□□□□□ -1.77
SCN1A-218ENST00000640036 U3KQK5 164 aa4.03□□□□□ -1.77
SCN1A-218ENST00000640036 EXPH5Q8NEV8 1989 aa4.02□□□□□ -1.77
SCN1A-218ENST00000640036 IGKV1D-17A0A075B6S4 117 aa4.02□□□□□ -1.77
SCN1A-218ENST00000640036 C9JQL5 133 aa4.02□□□□□ -1.77
SCN1A-218ENST00000640036 TFF1P04155 84 aa4.02□□□□□ -1.77
SCN1A-218ENST00000640036 EWSR1Q01844 656 aaKnown RBP eCLIP4.02□□□□□ -1.77
SCN1A-218ENST00000640036 TEX36Q5VZQ5 186 aa4.02□□□□□ -1.77
SCN1A-218ENST00000640036 TRBV25-1A0A075B6N4 114 aa4.02□□□□□ -1.77
SCN1A-218ENST00000640036 LINC01548A6NM66 108 aa4.02□□□□□ -1.77
SCN1A-218ENST00000640036 INS-IGF2F8WCM5 200 aa4.02□□□□□ -1.77
SCN1A-218ENST00000640036 ZNF138P52744 262 aa4.02□□□□□ -1.77
SCN1A-218ENST00000640036 CADM3Q8N126 398 aa4.02□□□□□ -1.77
SCN1A-218ENST00000640036 SMIM8Q96KF7 97 aa4.02□□□□□ -1.77
SCN1A-218ENST00000640036 FANCD2OSQ96PS1 177 aa4.02□□□□□ -1.77
SCN1A-218ENST00000640036 ATP6V0BQ99437 205 aa4.02□□□□□ -1.77
SCN1A-218ENST00000640036 SLC25A39Q9BZJ4 359 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-218ENST00000640036 ANGP03950 147 aaKnown RBP4.02□□□□□ -1.77
SCN1A-218ENST00000640036 ERCC8Q13216 396 aa4.02□□□□□ -1.77
SCN1A-218ENST00000640036 LINC01590Q5TEZ4 76 aa4.02□□□□□ -1.77
SCN1A-218ENST00000640036 ZNF493Q6ZR52 646 aa4.02□□□□□ -1.77
SCN1A-218ENST00000640036 TNFRSF13BO14836 293 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-218ENST00000640036 SLURP1P55000 103 aa4.02□□□□□ -1.77
SCN1A-218ENST00000640036 SPINK13Q1W4C9 94 aa4.02□□□□□ -1.77
SCN1A-218ENST00000640036 LOXP28300 417 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-218ENST00000640036 BCL6BQ8N143 479 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-218ENST00000640036 C4orf3Q8WVX3 66 aa4.02□□□□□ -1.77
SCN1A-218ENST00000640036 ZNF48Q96MX3 618 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-218ENST00000640036 V9GYY9 64 aa4.02□□□□□ -1.77
SCN1A-218ENST00000640036 HELZ2Q9BYK8 2649 aaKnown RBP4.02□□□□□ -1.77
SCN1A-218ENST00000640036 TRBV5-5A0A0J9YX44 114 aa4.02□□□□□ -1.77
SCN1A-218ENST00000640036 JMJD7-PLA2G4BH0Y9G9 81 aa4.02□□□□□ -1.77
SCN1A-218ENST00000640036 IGFBPL1Q8WX77 278 aa4.02□□□□□ -1.77
SCN1A-218ENST00000640036 GNB1LQ9BYB4 327 aa4.02□□□□□ -1.77
SCN1A-218ENST00000640036 A0A1W2PPI3 338 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 ACYP1P07311 99 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 LINC00158P58513 81 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 ODF3L1Q8IXM7 274 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 C7orf33Q8WU49 177 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 PRO1933Q9H354 126 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 RPP21Q9H633 154 aaKnown RBP4.01□□□□□ -1.77
SCN1A-218ENST00000640036 A0A1W2PNU3 283 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-218ENST00000640036 TMEM89A2RUT3 159 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 IL15RAQ13261 267 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 GPHA2Q96T91 129 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 SPRY4Q9C004 299 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 C7orf77A4D0Y5 90 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 HBDP02042 147 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 P0DMU3 169 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 FAM231AP0DMU4 169 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 FAM231CP0DMU5 169 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 C5orf63A6NC05 138 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 BLCAPP62952 87 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 FER1L6-AS1Q8NA97 138 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 GATD1Q8NB37 220 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 TRAV2A0A0B4J234 112 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 IGKV3D-20A0A0C4DH25 116 aa4.01□□□□□ -1.77
SCN1A-218ENST00000640036 A0A0J9YY99 117 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms