RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 KLLNB2CW77 178 aa13.16□□□□□ -0.3
CLN3-259ENST00000637551 SMLR1H3BR10 107 aa13.16□□□□□ -0.3
CLN3-259ENST00000637551 C1QBP02746 253 aa13.16□□□□□ -0.3
CLN3-259ENST00000637551 TCTAP57738 103 aa13.16□□□□□ -0.3
CLN3-259ENST00000637551 RANP62826 216 aaKnown RBP13.16□□□□□ -0.3
CLN3-259ENST00000637551 TMEM78Q5T7P6 136 aa13.16□□□□□ -0.3
CLN3-259ENST00000637551 ZNF493Q6ZR52 646 aa13.16□□□□□ -0.3
CLN3-259ENST00000637551 STOML3Q8TAV4 291 aa13.16□□□□□ -0.3
CLN3-259ENST00000637551 HYLS1Q96M11 299 aa13.16□□□□□ -0.3
CLN3-259ENST00000637551 NKX6-2Q9C056 277 aaPredicted RBP13.16□□□□□ -0.3
CLN3-259ENST00000637551 HYDINQ4G0P3 5121 aa13.15□□□□□ -0.3
CLN3-259ENST00000637551 FBLL1A6NHQ2 334 aaKnown RBP13.15□□□□□ -0.3
CLN3-259ENST00000637551 CT45A10P0DMU9 189 aa13.15□□□□□ -0.3
CLN3-259ENST00000637551 GCHFRP30047 84 aa13.15□□□□□ -0.3
CLN3-259ENST00000637551 FXYD7P58549 80 aa13.15□□□□□ -0.3
CLN3-259ENST00000637551 DPPA3Q6W0C5 159 aa13.15□□□□□ -0.3
CLN3-259ENST00000637551 LINC00467Q9BRT7 94 aa13.15□□□□□ -0.3
CLN3-259ENST00000637551 KLK5Q9Y337 293 aaPredicted RBP13.15□□□□□ -0.3
CLN3-259ENST00000637551 ARL2-SNX15V9GYD0 113 aa13.15□□□□□ -0.3
CLN3-259ENST00000637551 A0A1W2PRE2 83 aa13.14□□□□□ -0.31
CLN3-259ENST00000637551 AKAP14Q86UN6 197 aa13.14□□□□□ -0.31
CLN3-259ENST00000637551 BAP18Q8IXM2 172 aa13.14□□□□□ -0.31
CLN3-259ENST00000637551 C5orf17Q8NAS9 161 aa13.14□□□□□ -0.31
CLN3-259ENST00000637551 CMTM2Q8TAZ6 248 aa13.14□□□□□ -0.31
CLN3-259ENST00000637551 ZNF492Q9P255 531 aa13.14□□□□□ -0.31
CLN3-259ENST00000637551 LOC102723971A0A1B0GUV8 181 aa13.13□□□□□ -0.31
CLN3-259ENST00000637551 CXorf65A6NEN9 183 aa13.13□□□□□ -0.31
CLN3-259ENST00000637551 DIRC3C9JPN6 131 aa13.13□□□□□ -0.31
CLN3-259ENST00000637551 SPART-AS1P0CW21 52 aa13.13□□□□□ -0.31
CLN3-259ENST00000637551 TPT1P13693 172 aaKnown RBP13.13□□□□□ -0.31
CLN3-259ENST00000637551 ZNF138P52744 262 aa13.13□□□□□ -0.31
CLN3-259ENST00000637551 EIF5AL1Q6IS14 154 aaKnown RBP13.13□□□□□ -0.31
CLN3-259ENST00000637551 CEMP1Q6PRD7 247 aaPredicted RBP13.13□□□□□ -0.31
CLN3-259ENST00000637551 C16orf74Q96GX8 76 aa13.13□□□□□ -0.31
CLN3-259ENST00000637551 PYGO2Q9BRQ0 406 aa13.13□□□□□ -0.31
CLN3-259ENST00000637551 TCEAL7Q9BRU2 100 aa13.13□□□□□ -0.31
CLN3-259ENST00000637551 AGPAT4-IT1Q9H0P7 198 aa13.13□□□□□ -0.31
CLN3-259ENST00000637551 LYRM9A8MSI8 78 aa13.12□□□□□ -0.31
CLN3-259ENST00000637551 PFDN1O60925 122 aa13.12□□□□□ -0.31
CLN3-259ENST00000637551 LGALSLQ3ZCW2 172 aaPredicted RBP13.12□□□□□ -0.31
CLN3-259ENST00000637551 GFI1BQ5VTD9 330 aa13.12□□□□□ -0.31
CLN3-259ENST00000637551 TMUB2Q71RG4 321 aa13.12□□□□□ -0.31
CLN3-259ENST00000637551 TMEM263Q8WUH6 116 aaKnown RBP13.12□□□□□ -0.31
CLN3-259ENST00000637551 NIPSNAP3BQ9BS92 247 aa13.12□□□□□ -0.31
CLN3-259ENST00000637551 ZNF471Q9BX82 626 aaPredicted RBP13.12□□□□□ -0.31
CLN3-259ENST00000637551 IGHV3OR16-12A0A075B7B8 117 aa13.11□□□□□ -0.31
CLN3-259ENST00000637551 C7orf71A4D174 169 aa13.11□□□□□ -0.31
CLN3-259ENST00000637551 ZFAND6Q6FIF0 208 aa13.11□□□□□ -0.31
CLN3-259ENST00000637551 PHLDA1Q8WV24 401 aaPredicted RBP13.11□□□□□ -0.31
CLN3-259ENST00000637551 STARD9Q9P2P6 4700 aa13.1□□□□□ -0.31
CLN3-259ENST00000637551 TRAV12-2A0A075B6T6 113 aa13.1□□□□□ -0.31
CLN3-259ENST00000637551 IGKV2-40A0A087WW87 121 aaPredicted RBP13.1□□□□□ -0.31
CLN3-259ENST00000637551 PGPA6NDG6 321 aa13.1□□□□□ -0.31
CLN3-259ENST00000637551 K7EQM0 130 aa13.1□□□□□ -0.31
CLN3-259ENST00000637551 IGKV2D-40P01614 121 aaPredicted RBP13.1□□□□□ -0.31
CLN3-259ENST00000637551 RAB5CP51148 216 aa13.1□□□□□ -0.31
CLN3-259ENST00000637551 ZNF726P1Q15940 193 aa13.1□□□□□ -0.31
CLN3-259ENST00000637551 LINC01587Q99440 93 aa13.1□□□□□ -0.31
CLN3-259ENST00000637551 DKK2Q9UBU2 259 aa13.1□□□□□ -0.31
CLN3-259ENST00000637551 TRAV10A0A0B4J240 114 aa13.09□□□□□ -0.31
CLN3-259ENST00000637551 DEFB4AO15263 64 aa13.09□□□□□ -0.31
CLN3-259ENST00000637551 ZFAND2AQ8N6M9 145 aa13.09□□□□□ -0.31
CLN3-259ENST00000637551 RNASE8Q8TDE3 154 aaKnown RBP13.09□□□□□ -0.31
CLN3-259ENST00000637551 VGLL1Q99990 258 aa13.09□□□□□ -0.31
CLN3-259ENST00000637551 MAP1LC3B2A6NCE7 125 aa13.08□□□□□ -0.32
CLN3-259ENST00000637551 HMGB3O15347 200 aaKnown RBP13.08□□□□□ -0.32
CLN3-259ENST00000637551 GPX1P07203 203 aa13.08□□□□□ -0.32
CLN3-259ENST00000637551 FHITP49789 147 aa13.08□□□□□ -0.32
CLN3-259ENST00000637551 NANOS2P60321 138 aaKnown RBP13.08□□□□□ -0.32
CLN3-259ENST00000637551 CCDC28AQ8IWP9 274 aa13.08□□□□□ -0.32
CLN3-259ENST00000637551 ZNF680Q8NEM1 530 aa13.08□□□□□ -0.32
CLN3-259ENST00000637551 MBD3L1Q8WWY6 194 aa13.08□□□□□ -0.32
CLN3-259ENST00000637551 FAM210BQ96KR6 192 aa13.08□□□□□ -0.32
CLN3-259ENST00000637551 MAP1LC3BQ9GZQ8 125 aa13.08□□□□□ -0.32
CLN3-259ENST00000637551 YTHDF2Q9Y5A9 579 aaKnown RBP13.08□□□□□ -0.32
CLN3-259ENST00000637551 ZNF324O75467 553 aaPredicted RBP13.07□□□□□ -0.32
CLN3-259ENST00000637551 ERCC8Q13216 396 aa13.07□□□□□ -0.32
CLN3-259ENST00000637551 PMS2P11Q13670 270 aa13.07□□□□□ -0.32
CLN3-259ENST00000637551 ANXA2RQ3ZCQ2 193 aa13.07□□□□□ -0.32
CLN3-259ENST00000637551 SSX7Q7RTT5 188 aa13.07□□□□□ -0.32
CLN3-259ENST00000637551 SLC51BQ86UW2 128 aa13.07□□□□□ -0.32
CLN3-259ENST00000637551 TCRAP04437 139 aa13.06□□□□□ -0.32
CLN3-259ENST00000637551 PPT1P50897 306 aa13.06□□□□□ -0.32
CLN3-259ENST00000637551 C12orf74Q32Q52 190 aa13.06□□□□□ -0.32
CLN3-259ENST00000637551 FAM222AQ5U5X8 452 aa13.06□□□□□ -0.32
CLN3-259ENST00000637551 Q6AWC8 147 aa13.06□□□□□ -0.32
CLN3-259ENST00000637551 CYB561D1Q8N8Q1 229 aa13.06□□□□□ -0.32
CLN3-259ENST00000637551 C2CD4CQ8TF44 421 aa13.06□□□□□ -0.32
CLN3-259ENST00000637551 HIST1H2BAQ96A08 127 aa13.06□□□□□ -0.32
CLN3-259ENST00000637551 ATG101Q9BSB4 218 aa13.06□□□□□ -0.32
CLN3-259ENST00000637551 CELA1Q9UNI1 258 aa13.06□□□□□ -0.32
CLN3-259ENST00000637551 TIMM8BQ9Y5J9 83 aaPredicted RBP13.06□□□□□ -0.32
CLN3-259ENST00000637551 PLAC8L1A1L4L8 177 aa13.05□□□□□ -0.32
CLN3-259ENST00000637551 GGTLC3B5MD39 225 aa13.05□□□□□ -0.32
CLN3-259ENST00000637551 IBA57Q5T440 356 aaKnown RBP13.05□□□□□ -0.32
CLN3-259ENST00000637551 TMEM75Q8N9X5 138 aa13.05□□□□□ -0.32
CLN3-259ENST00000637551 NDFIP1Q9BT67 221 aa13.05□□□□□ -0.32
CLN3-259ENST00000637551 EPDR1Q9UM22 224 aa13.05□□□□□ -0.32
CLN3-259ENST00000637551 TRAV1-1A0A0B4J248 108 aa13.04□□□□□ -0.32
CLN3-259ENST00000637551 TRAV12-3A0A0B4J271 114 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms