RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 FOLR3P41439 243 aa5.41□□□□□ -1.54
SCN1A-213ENST00000636759 UBE2WQ96B02 151 aa5.41□□□□□ -1.54
SCN1A-213ENST00000636759 Q9H3A6 140 aa5.41□□□□□ -1.54
SCN1A-213ENST00000636759 FREM1Q5H8C1 2179 aa5.4□□□□□ -1.54
SCN1A-213ENST00000636759 ZNF815PA8K554 130 aa5.4□□□□□ -1.54
SCN1A-213ENST00000636759 H3BTX0 84 aa5.4□□□□□ -1.54
SCN1A-213ENST00000636759 CDX4O14627 284 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-213ENST00000636759 CD3EP07766 207 aa5.4□□□□□ -1.54
SCN1A-213ENST00000636759 CD59P13987 128 aa5.4□□□□□ -1.54
SCN1A-213ENST00000636759 CD69Q07108 199 aa5.4□□□□□ -1.54
SCN1A-213ENST00000636759 GOLT1AQ6ZVE7 132 aa5.4□□□□□ -1.54
SCN1A-213ENST00000636759 KIR2DL5BQ8NHK3 375 aa5.4□□□□□ -1.54
SCN1A-213ENST00000636759 KLK5Q9Y337 293 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-213ENST00000636759 TRGV11A0A075B6L2 103 aa5.4□□□□□ -1.55
SCN1A-213ENST00000636759 TIMM23O14925 209 aa5.4□□□□□ -1.55
SCN1A-213ENST00000636759 ENSAO43768 121 aaKnown RBP5.4□□□□□ -1.55
SCN1A-213ENST00000636759 LGALS1P09382 135 aaKnown RBP5.4□□□□□ -1.55
SCN1A-213ENST00000636759 Q1RN00 199 aa5.4□□□□□ -1.55
SCN1A-213ENST00000636759 RPS19BP1Q86WX3 136 aaKnown RBP5.4□□□□□ -1.55
SCN1A-213ENST00000636759 DUX3Q96PT4 197 aa5.4□□□□□ -1.55
SCN1A-213ENST00000636759 MRPL20Q9BYC9 149 aaKnown RBP5.4□□□□□ -1.55
SCN1A-213ENST00000636759 ARRDC1-AS1Q9H2J1 176 aa5.4□□□□□ -1.55
SCN1A-213ENST00000636759 FOXA2Q9Y261 457 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-213ENST00000636759 SDK2Q58EX2 2172 aa5.4□□□□□ -1.55
SCN1A-213ENST00000636759 IGHV3-64DA0A0J9YX35 117 aa5.4□□□□□ -1.55
SCN1A-213ENST00000636759 RPL13AP40429 203 aaKnown RBP5.4□□□□□ -1.55
SCN1A-213ENST00000636759 UBE2D1P51668 147 aa5.4□□□□□ -1.55
SCN1A-213ENST00000636759 HERVK_113P61574 105 aa5.4□□□□□ -1.55
SCN1A-213ENST00000636759 MLANAQ16655 118 aa5.4□□□□□ -1.55
SCN1A-213ENST00000636759 RBAKDNA6NC62 111 aa5.39□□□□□ -1.55
SCN1A-213ENST00000636759 LYZL1Q6UWQ5 148 aa5.39□□□□□ -1.55
SCN1A-213ENST00000636759 HRCT1Q6UXD1 115 aa5.39□□□□□ -1.55
SCN1A-213ENST00000636759 MDP1Q86V88 176 aa5.39□□□□□ -1.55
SCN1A-213ENST00000636759 NDUFA11Q86Y39 141 aa5.39□□□□□ -1.55
SCN1A-213ENST00000636759 LINC00526Q96FQ7 95 aa5.39□□□□□ -1.55
SCN1A-213ENST00000636759 C1orf43Q9BWL3 253 aa5.39□□□□□ -1.55
SCN1A-213ENST00000636759 U3KQK5 164 aa5.39□□□□□ -1.55
SCN1A-213ENST00000636759 NBEAQ8NFP9 2946 aa5.39□□□□□ -1.55
SCN1A-213ENST00000636759 M0R2P5 195 aa5.39□□□□□ -1.55
SCN1A-213ENST00000636759 IGHV3-9P01782 118 aa5.39□□□□□ -1.55
SCN1A-213ENST00000636759 MYCNOSP40205 109 aa5.39□□□□□ -1.55
SCN1A-213ENST00000636759 ERHP84090 104 aaKnown RBP5.39□□□□□ -1.55
SCN1A-213ENST00000636759 TNFAIP6P98066 277 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-213ENST00000636759 SRSF2Q01130 221 aaKnown RBP5.39□□□□□ -1.55
SCN1A-213ENST00000636759 ZNRF2Q8NHG8 242 aa5.39□□□□□ -1.55
SCN1A-213ENST00000636759 VKORC1Q9BQB6 163 aa5.39□□□□□ -1.55
SCN1A-213ENST00000636759 SSUH2Q9Y2M2 353 aa5.39□□□□□ -1.55
SCN1A-213ENST00000636759 TET2Q6N021 2002 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-213ENST00000636759 TEX49A0A1B0GTD5 131 aa5.38□□□□□ -1.55
SCN1A-213ENST00000636759 H7C2G1 150 aa5.38□□□□□ -1.55
SCN1A-213ENST00000636759 ORM1P02763 201 aa5.38□□□□□ -1.55
SCN1A-213ENST00000636759 HLA-DMBP28068 263 aa5.38□□□□□ -1.55
SCN1A-213ENST00000636759 SUB1P53999 127 aaKnown RBP eCLIP5.38□□□□□ -1.55
SCN1A-213ENST00000636759 TRPT1Q86TN4 253 aaKnown RBP5.38□□□□□ -1.55
SCN1A-213ENST00000636759 BAALCQ8WXS3 180 aa5.38□□□□□ -1.55
SCN1A-213ENST00000636759 TMEM14BQ9NUH8 114 aa5.38□□□□□ -1.55
SCN1A-213ENST00000636759 MSRB2Q9Y3D2 182 aa5.38□□□□□ -1.55
SCN1A-213ENST00000636759 A0A096LPE4 126 aa5.38□□□□□ -1.55
SCN1A-213ENST00000636759 A0A1W2PPZ6 126 aa5.38□□□□□ -1.55
SCN1A-213ENST00000636759 ATXN8Q156A1 80 aa5.38□□□□□ -1.55
SCN1A-213ENST00000636759 C2orf83Q53S99 150 aa5.38□□□□□ -1.55
SCN1A-213ENST00000636759 RPL39P5Q59GN2 51 aa5.38□□□□□ -1.55
SCN1A-213ENST00000636759 PRO1854Q9UHT4 67 aa5.38□□□□□ -1.55
SCN1A-213ENST00000636759 LGALS9O00182 355 aa5.38□□□□□ -1.55
SCN1A-213ENST00000636759 PSPNO60542 156 aa5.38□□□□□ -1.55
SCN1A-213ENST00000636759 IGHV3-13P01766 116 aa5.38□□□□□ -1.55
SCN1A-213ENST00000636759 TRACP01848 142 aa5.38□□□□□ -1.55
SCN1A-213ENST00000636759 GRPP07492 148 aa5.38□□□□□ -1.55
SCN1A-213ENST00000636759 PRCDQ00LT1 54 aa5.38□□□□□ -1.55
SCN1A-213ENST00000636759 EDDM3AQ14507 147 aa5.38□□□□□ -1.55
SCN1A-213ENST00000636759 IGFBPL1Q8WX77 278 aa5.38□□□□□ -1.55
SCN1A-213ENST00000636759 OTORQ9NRC9 128 aa5.38□□□□□ -1.55
SCN1A-213ENST00000636759 LPAL2Q16609 132 aa5.37□□□□□ -1.55
SCN1A-213ENST00000636759 ASCL2Q99929 193 aa5.37□□□□□ -1.55
SCN1A-213ENST00000636759 TRBV7-7A0A0K0K1E9 115 aa5.37□□□□□ -1.55
SCN1A-213ENST00000636759 PINLYPA6NC86 204 aa5.37□□□□□ -1.55
SCN1A-213ENST00000636759 C15orf65H3BRN8 121 aa5.37□□□□□ -1.55
SCN1A-213ENST00000636759 H7C1H1 209 aa5.37□□□□□ -1.55
SCN1A-213ENST00000636759 IGHV4-39P01824 125 aa5.37□□□□□ -1.55
SCN1A-213ENST00000636759 RFPL3SP0C7P2 107 aa5.37□□□□□ -1.55
SCN1A-213ENST00000636759 PAX8Q06710 450 aa5.37□□□□□ -1.55
SCN1A-213ENST00000636759 C2orf82Q6UX34 121 aa5.37□□□□□ -1.55
SCN1A-213ENST00000636759 IGKV3D-15A0A087WSY6 115 aa5.37□□□□□ -1.55
SCN1A-213ENST00000636759 F8VRH5 84 aa5.37□□□□□ -1.55
SCN1A-213ENST00000636759 TM4SF5O14894 197 aa5.37□□□□□ -1.55
SCN1A-213ENST00000636759 ATP5G1P05496 136 aa5.37□□□□□ -1.55
SCN1A-213ENST00000636759 LINC01620Q4KN68 170 aa5.37□□□□□ -1.55
SCN1A-213ENST00000636759 UTF1Q5T230 341 aa5.37□□□□□ -1.55
SCN1A-213ENST00000636759 PATE2Q6UY27 113 aa5.37□□□□□ -1.55
SCN1A-213ENST00000636759 SLC25A39Q9BZJ4 359 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-213ENST00000636759 IMUPQ9GZP8 106 aa5.37□□□□□ -1.55
SCN1A-213ENST00000636759 LINC00527Q9UJ94 153 aa5.37□□□□□ -1.55
SCN1A-213ENST00000636759 INTS1Q8N201 2190 aaKnown RBP5.37□□□□□ -1.55
SCN1A-213ENST00000636759 DSCAML1Q8TD84 2053 aa5.37□□□□□ -1.55
SCN1A-213ENST00000636759 DSPP15924 2871 aaKnown RBP5.37□□□□□ -1.55
SCN1A-213ENST00000636759 MRPS12O15235 138 aaKnown RBP5.36□□□□□ -1.55
SCN1A-213ENST00000636759 MBD3L4A6NDZ8 208 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-213ENST00000636759 MBD3L3A6NE82 208 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-213ENST00000636759 MBD3L5A6NJ08 208 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-213ENST00000636759 J3QLI3 93 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms