RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 AGPAT4-IT1Q9H0P7 198 aa13.93□□□□□ -0.18
SQSTM1-216ENST00000626660 GGTLC3B5MD39 225 aa13.92□□□□□ -0.18
SQSTM1-216ENST00000626660 INSP01308 110 aa13.92□□□□□ -0.18
SQSTM1-216ENST00000626660 CT45A10P0DMU9 189 aa13.92□□□□□ -0.18
SQSTM1-216ENST00000626660 CDKN1BP46527 198 aa13.92□□□□□ -0.18
SQSTM1-216ENST00000626660 CSNK1G2-AS1Q8NCQ2 148 aa13.92□□□□□ -0.18
SQSTM1-216ENST00000626660 OR11H2Q8NH07 326 aa13.92□□□□□ -0.18
SQSTM1-216ENST00000626660 IGF2BP2-AS1Q96M15 143 aa13.92□□□□□ -0.18
SQSTM1-216ENST00000626660 VGLL1Q99990 258 aa13.92□□□□□ -0.18
SQSTM1-216ENST00000626660 GOLT1BQ9Y3E0 138 aa13.92□□□□□ -0.18
SQSTM1-216ENST00000626660 YTHDF2Q9Y5A9 579 aaKnown RBP13.92□□□□□ -0.18
SQSTM1-216ENST00000626660 TRAV1-1A0A0B4J248 108 aa13.91□□□□□ -0.18
SQSTM1-216ENST00000626660 SERTM2A0A1B0GWG4 89 aa13.91□□□□□ -0.18
SQSTM1-216ENST00000626660 FAM74A7A6NL05 159 aa13.91□□□□□ -0.18
SQSTM1-216ENST00000626660 ZNF705EA8MWA4 302 aaPredicted RBP13.91□□□□□ -0.18
SQSTM1-216ENST00000626660 K7EQM0 130 aa13.91□□□□□ -0.18
SQSTM1-216ENST00000626660 IFNA7P01567 189 aa13.91□□□□□ -0.18
SQSTM1-216ENST00000626660 GNG5P63218 68 aa13.91□□□□□ -0.18
SQSTM1-216ENST00000626660 GOLT1AQ6ZVE7 132 aa13.91□□□□□ -0.18
SQSTM1-216ENST00000626660 ARL2-SNX15V9GYD0 113 aa13.91□□□□□ -0.18
SQSTM1-216ENST00000626660 ZNF138P52744 262 aa13.9□□□□□ -0.18
SQSTM1-216ENST00000626660 CST9LP1Q5W188 147 aa13.9□□□□□ -0.18
SQSTM1-216ENST00000626660 TMEM208Q9BTX3 173 aa13.9□□□□□ -0.18
SQSTM1-216ENST00000626660 EPDR1Q9UM22 224 aa13.9□□□□□ -0.18
SQSTM1-216ENST00000626660 TRAV12-2A0A075B6T6 113 aa13.89□□□□□ -0.19
SQSTM1-216ENST00000626660 IGHV3OR16-12A0A075B7B8 117 aa13.89□□□□□ -0.19
SQSTM1-216ENST00000626660 TCRAP04437 139 aa13.89□□□□□ -0.19
SQSTM1-216ENST00000626660 BLOC1S1P78537 153 aa13.89□□□□□ -0.19
SQSTM1-216ENST00000626660 HUWE1Q7Z6Z7 4374 aaKnown RBP13.89□□□□□ -0.19
SQSTM1-216ENST00000626660 CRXO43186 299 aaPredicted RBP13.88□□□□□ -0.19
SQSTM1-216ENST00000626660 PAGE4O60829 102 aa13.88□□□□□ -0.19
SQSTM1-216ENST00000626660 CYB561D1Q8N8Q1 229 aa13.88□□□□□ -0.19
SQSTM1-216ENST00000626660 ATG101Q9BSB4 218 aa13.88□□□□□ -0.19
SQSTM1-216ENST00000626660 MANBALQ9NQG1 85 aa13.88□□□□□ -0.19
SQSTM1-216ENST00000626660 ZNF492Q9P255 531 aa13.88□□□□□ -0.19
SQSTM1-216ENST00000626660 TRBV7-9A0A0J9YWB2 115 aa13.87□□□□□ -0.19
SQSTM1-216ENST00000626660 F6UZH7 168 aa13.87□□□□□ -0.19
SQSTM1-216ENST00000626660 J3KRW8 73 aa13.87□□□□□ -0.19
SQSTM1-216ENST00000626660 NMBP08949 121 aa13.87□□□□□ -0.19
SQSTM1-216ENST00000626660 MIFP14174 115 aa13.87□□□□□ -0.19
SQSTM1-216ENST00000626660 ZNF705AQ6ZN79 300 aaPredicted RBP13.87□□□□□ -0.19
SQSTM1-216ENST00000626660 Q8TAT8 98 aa13.87□□□□□ -0.19
SQSTM1-216ENST00000626660 TCEAL7Q9BRU2 100 aa13.87□□□□□ -0.19
SQSTM1-216ENST00000626660 LENEPQ9Y5L5 61 aa13.87□□□□□ -0.19
SQSTM1-216ENST00000626660 IFNA1P01562 189 aa13.86□□□□□ -0.19
SQSTM1-216ENST00000626660 CRISP2P16562 243 aa13.86□□□□□ -0.19
SQSTM1-216ENST00000626660 C1orf158Q8N1D5 194 aa13.86□□□□□ -0.19
SQSTM1-216ENST00000626660 TMEM256Q8N2U0 113 aa13.86□□□□□ -0.19
SQSTM1-216ENST00000626660 HIST1H2BAQ96A08 127 aa13.86□□□□□ -0.19
SQSTM1-216ENST00000626660 FAM19A4Q96LR4 140 aa13.86□□□□□ -0.19
SQSTM1-216ENST00000626660 NEU1Q99519 415 aa13.86□□□□□ -0.19
SQSTM1-216ENST00000626660 C20orf144Q9BQM9 153 aa13.86□□□□□ -0.19
SQSTM1-216ENST00000626660 GNG13Q9P2W3 67 aa13.86□□□□□ -0.19
SQSTM1-216ENST00000626660 SMIM9A6NGZ8 99 aa13.85□□□□□ -0.19
SQSTM1-216ENST00000626660 FBLL1A6NHQ2 334 aaKnown RBP13.85□□□□□ -0.19
SQSTM1-216ENST00000626660 PEX7O00628 323 aa13.85□□□□□ -0.19
SQSTM1-216ENST00000626660 GPX1P07203 203 aa13.85□□□□□ -0.19
SQSTM1-216ENST00000626660 CCL20P78556 96 aa13.85□□□□□ -0.19
SQSTM1-216ENST00000626660 GFI1BQ5VTD9 330 aa13.85□□□□□ -0.19
SQSTM1-216ENST00000626660 NDFIP1Q9BT67 221 aa13.85□□□□□ -0.19
SQSTM1-216ENST00000626660 X6R8D5 127 aa13.85□□□□□ -0.19
SQSTM1-216ENST00000626660 TRAV8-1A0A0A6YYK1 113 aa13.84□□□□□ -0.19
SQSTM1-216ENST00000626660 ATP5G3P48201 142 aa13.84□□□□□ -0.19
SQSTM1-216ENST00000626660 TMEM75Q8N9X5 138 aa13.84□□□□□ -0.19
SQSTM1-216ENST00000626660 LINC01587Q99440 93 aa13.84□□□□□ -0.19
SQSTM1-216ENST00000626660 NIPSNAP3BQ9BS92 247 aa13.84□□□□□ -0.19
SQSTM1-216ENST00000626660 IGHV4-28A0A0C4DH34 117 aa13.83□□□□□ -0.2
SQSTM1-216ENST00000626660 A0A0J9YWU9 116 aa13.83□□□□□ -0.2
SQSTM1-216ENST00000626660 C7orf71A4D174 169 aa13.83□□□□□ -0.2
SQSTM1-216ENST00000626660 KLLNB2CW77 178 aa13.83□□□□□ -0.2
SQSTM1-216ENST00000626660 C11orf94C9JXX5 98 aa13.83□□□□□ -0.2
SQSTM1-216ENST00000626660 RNASE4P34096 147 aaKnown RBP13.83□□□□□ -0.2
SQSTM1-216ENST00000626660 FLI1Q01543 452 aaPredicted RBP13.83□□□□□ -0.2
SQSTM1-216ENST00000626660 KIR3DS1Q14943 382 aa13.83□□□□□ -0.2
SQSTM1-216ENST00000626660 CCDC28AQ8IWP9 274 aa13.83□□□□□ -0.2
SQSTM1-216ENST00000626660 ZFAND2AQ8N6M9 145 aa13.83□□□□□ -0.2
SQSTM1-216ENST00000626660 WWC2-AS2Q96NR7 200 aa13.83□□□□□ -0.2
SQSTM1-216ENST00000626660 C11orf68Q9H3H3 251 aaKnown RBP13.83□□□□□ -0.2
SQSTM1-216ENST00000626660 TRAV12-3A0A0B4J271 114 aa13.82□□□□□ -0.2
SQSTM1-216ENST00000626660 H7BYZ3 331 aa13.82□□□□□ -0.2
SQSTM1-216ENST00000626660 RRN3P1Q2M238 152 aa13.82□□□□□ -0.2
SQSTM1-216ENST00000626660 TEX261Q6UWH6 196 aa13.82□□□□□ -0.2
SQSTM1-216ENST00000626660 Q8NAQ8 132 aa13.82□□□□□ -0.2
SQSTM1-216ENST00000626660 SGK494Q96LW2 274 aa13.82□□□□□ -0.2
SQSTM1-216ENST00000626660 TXNDC17Q9BRA2 123 aa13.82□□□□□ -0.2
SQSTM1-216ENST00000626660 EDA2RQ9HAV5 297 aa13.82□□□□□ -0.2
SQSTM1-216ENST00000626660 PSG8Q9UQ74 426 aa13.82□□□□□ -0.2
SQSTM1-216ENST00000626660 RBMY1A1P0DJD3 496 aaKnown RBP13.81□□□□□ -0.2
SQSTM1-216ENST00000626660 RBMY1CP0DJD4 496 aa13.81□□□□□ -0.2
SQSTM1-216ENST00000626660 TAGLN2P37802 199 aaKnown RBP13.81□□□□□ -0.2
SQSTM1-216ENST00000626660 TAS2R60P59551 318 aa13.81□□□□□ -0.2
SQSTM1-216ENST00000626660 BTN1A1Q13410 526 aa13.81□□□□□ -0.2
SQSTM1-216ENST00000626660 PMS2P11Q13670 270 aa13.81□□□□□ -0.2
SQSTM1-216ENST00000626660 RBMY1FQ15415 496 aaKnown RBP13.81□□□□□ -0.2
SQSTM1-216ENST00000626660 PRNTQ86SH4 94 aa13.81□□□□□ -0.2
SQSTM1-216ENST00000626660 TREM1Q9NP99 234 aa13.81□□□□□ -0.2
SQSTM1-216ENST00000626660 DEFB4AO15263 64 aa13.8□□□□□ -0.2
SQSTM1-216ENST00000626660 AKR1C3P42330 323 aa13.8□□□□□ -0.2
SQSTM1-216ENST00000626660 UBE2G1P62253 170 aa13.8□□□□□ -0.2
SQSTM1-216ENST00000626660 ZNF680Q8NEM1 530 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms