RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 ATP6V0E2Q8NHE4 81 aa7.19□□□□□ -1.26
VCL-206ENST00000623461 DYSFO75923 2080 aa7.19□□□□□ -1.26
VCL-206ENST00000623461 TRBV7-1A0A0A6YYK4 115 aa7.19□□□□□ -1.26
VCL-206ENST00000623461 ZNF474Q6S9Z5 364 aaPredicted RBP7.19□□□□□ -1.26
VCL-206ENST00000623461 C8orf86Q6ZUL3 223 aa7.19□□□□□ -1.26
VCL-206ENST00000623461 FAM27E3Q08E93 113 aa7.19□□□□□ -1.26
VCL-206ENST00000623461 SMIM20Q8N5G0 67 aa7.19□□□□□ -1.26
VCL-206ENST00000623461 AMTNQ6UX39 209 aa7.19□□□□□ -1.26
VCL-206ENST00000623461 TRPT1Q86TN4 253 aaKnown RBP7.19□□□□□ -1.26
VCL-206ENST00000623461 LINC00205P59089 165 aa7.18□□□□□ -1.26
VCL-206ENST00000623461 THAP8Q8NA92 274 aa7.18□□□□□ -1.26
VCL-206ENST00000623461 CRIPAKQ8N1N5 446 aa7.18□□□□□ -1.26
VCL-206ENST00000623461 FXYD5Q96DB9 178 aa7.18□□□□□ -1.26
VCL-206ENST00000623461 C8orf49Q96NF6 230 aa7.18□□□□□ -1.26
VCL-206ENST00000623461 DKK2Q9UBU2 259 aa7.18□□□□□ -1.26
VCL-206ENST00000623461 IGKV1D-17A0A075B6S4 117 aa7.18□□□□□ -1.26
VCL-206ENST00000623461 TCTEX1D4Q5JR98 221 aa7.18□□□□□ -1.26
VCL-206ENST00000623461 C17orf82Q86X59 251 aaPredicted RBP7.18□□□□□ -1.26
VCL-206ENST00000623461 GAFA1Q96PS6 74 aa7.18□□□□□ -1.26
VCL-206ENST00000623461 TP53TG1Q9Y2A0 90 aa7.18□□□□□ -1.26
VCL-206ENST00000623461 A0A0U1RRA0 63 aa7.18□□□□□ -1.26
VCL-206ENST00000623461 MALP21145 153 aa7.18□□□□□ -1.26
VCL-206ENST00000623461 SPXQ9BT56 116 aa7.18□□□□□ -1.26
VCL-206ENST00000623461 NDUFB8O95169 186 aa7.18□□□□□ -1.26
VCL-206ENST00000623461 FOXG1P55316 489 aaPredicted RBP7.18□□□□□ -1.26
VCL-206ENST00000623461 PLXND1Q9Y4D7 1925 aa7.17□□□□□ -1.26
VCL-206ENST00000623461 PINLYPA6NC86 204 aa7.17□□□□□ -1.26
VCL-206ENST00000623461 K7EM74 188 aa7.17□□□□□ -1.26
VCL-206ENST00000623461 PAX4O43316 350 aa7.17□□□□□ -1.26
VCL-206ENST00000623461 SH2D6Q7Z4S9 175 aa7.17□□□□□ -1.26
VCL-206ENST00000623461 NTN5Q8WTR8 489 aaPredicted RBP7.17□□□□□ -1.26
VCL-206ENST00000623461 C20orf78Q9BR46 151 aa7.17□□□□□ -1.26
VCL-206ENST00000623461 CARD19Q96LW7 228 aa7.17□□□□□ -1.26
VCL-206ENST00000623461 HS3ST6Q96QI5 342 aa7.17□□□□□ -1.26
VCL-206ENST00000623461 PKIGQ9Y2B9 76 aa7.17□□□□□ -1.26
VCL-206ENST00000623461 SRD5A1P18405 259 aa7.17□□□□□ -1.26
VCL-206ENST00000623461 B3GALT5-AS1P59052 145 aa7.17□□□□□ -1.26
VCL-206ENST00000623461 LAMTOR3Q9UHA4 124 aa7.17□□□□□ -1.26
VCL-206ENST00000623461 ANKRD39Q53RE8 183 aa7.17□□□□□ -1.26
VCL-206ENST00000623461 TEN1Q86WV5 123 aa7.17□□□□□ -1.26
VCL-206ENST00000623461 Q8NFD4 153 aa7.17□□□□□ -1.26
VCL-206ENST00000623461 FDCSPQ8NFU4 85 aa7.17□□□□□ -1.26
VCL-206ENST00000623461 RIF1Q5UIP0 2472 aaKnown RBP7.17□□□□□ -1.26
VCL-206ENST00000623461 ALPK3Q96L96 1907 aa7.17□□□□□ -1.26
VCL-206ENST00000623461 A0A1W2PPI3 338 aa7.17□□□□□ -1.26
VCL-206ENST00000623461 COLQQ9Y215 455 aaPredicted RBP7.17□□□□□ -1.26
VCL-206ENST00000623461 J3KT08 172 aa7.16□□□□□ -1.26
VCL-206ENST00000623461 C15orf32Q32M92 178 aa7.16□□□□□ -1.26
VCL-206ENST00000623461 SPRR3Q9UBC9 169 aa7.16□□□□□ -1.26
VCL-206ENST00000623461 MINOS1Q5TGZ0 78 aa7.16□□□□□ -1.26
VCL-206ENST00000623461 PCP2Q8IVA1 136 aa7.16□□□□□ -1.26
VCL-206ENST00000623461 MINOS1-NBL1R4GNA1 71 aa7.16□□□□□ -1.26
VCL-206ENST00000623461 TRBV25-1A0A075B6N4 114 aa7.16□□□□□ -1.26
VCL-206ENST00000623461 CFC1BP0CG36 223 aa7.16□□□□□ -1.26
VCL-206ENST00000623461 CFC1P0CG37 223 aa7.16□□□□□ -1.26
VCL-206ENST00000623461 WFDC12Q8WWY7 111 aa7.16□□□□□ -1.26
VCL-206ENST00000623461 SMIM2Q9BVW6 85 aa7.16□□□□□ -1.26
VCL-206ENST00000623461 TRAV26-1A0A087WT03 109 aa7.16□□□□□ -1.26
VCL-206ENST00000623461 FOXI1Q12951 378 aa7.16□□□□□ -1.26
VCL-206ENST00000623461 PRR25Q96S07 402 aa7.16□□□□□ -1.26
VCL-206ENST00000623461 NTN3O00634 580 aaPredicted RBP7.16□□□□□ -1.26
VCL-206ENST00000623461 IGKV1-16P04430 117 aa7.16□□□□□ -1.26
VCL-206ENST00000623461 ITLN2Q8WWU7 325 aaPredicted RBP7.16□□□□□ -1.26
VCL-206ENST00000623461 ZC2HC1AQ96GY0 325 aa7.16□□□□□ -1.26
VCL-206ENST00000623461 UBL5Q9BZL1 73 aa7.16□□□□□ -1.26
VCL-206ENST00000623461 HEATR5AQ86XA9 2040 aa7.16□□□□□ -1.26
VCL-206ENST00000623461 H3BRN7 92 aa7.16□□□□□ -1.26
VCL-206ENST00000623461 BUB1B-PAK6H3BSN5 160 aa7.15□□□□□ -1.26
VCL-206ENST00000623461 ZNF415Q09FC8 603 aa7.15□□□□□ -1.26
VCL-206ENST00000623461 C5orf64Q2M2E5 130 aa7.15□□□□□ -1.26
VCL-206ENST00000623461 ZNF833PQ6ZTB9 187 aa7.15□□□□□ -1.26
VCL-206ENST00000623461 PRIMA1Q86XR5 153 aa7.15□□□□□ -1.26
VCL-206ENST00000623461 PRSS22Q9GZN4 317 aa7.15□□□□□ -1.26
VCL-206ENST00000623461 TRGV2A0A075B6R0 118 aa7.15□□□□□ -1.26
VCL-206ENST00000623461 SRRM4A7MD48 611 aaKnown RBP7.15□□□□□ -1.26
VCL-206ENST00000623461 TMEM178BH3BS89 294 aa7.15□□□□□ -1.26
VCL-206ENST00000623461 CFHR1Q03591 330 aa7.15□□□□□ -1.26
VCL-206ENST00000623461 RNF166Q96A37 237 aaPredicted RBP7.15□□□□□ -1.26
VCL-206ENST00000623461 ERCC8Q13216 396 aa7.15□□□□□ -1.26
VCL-206ENST00000623461 TICRRQ7Z2Z1 1910 aa7.15□□□□□ -1.27
VCL-206ENST00000623461 IL17RELQ6ZVW7 336 aa7.15□□□□□ -1.27
VCL-206ENST00000623461 J3QQQ9 107 aa7.15□□□□□ -1.27
VCL-206ENST00000623461 TMEM258P61165 79 aa7.15□□□□□ -1.27
VCL-206ENST00000623461 ATP1A1-AS1Q5TC04 95 aa7.15□□□□□ -1.27
VCL-206ENST00000623461 WFDC2Q14508 124 aa7.14□□□□□ -1.27
VCL-206ENST00000623461 MORN5Q5VZ52 161 aa7.14□□□□□ -1.27
VCL-206ENST00000623461 RPL36AP83881 106 aaKnown RBP7.14□□□□□ -1.27
VCL-206ENST00000623461 RPL36ALQ969Q0 106 aaKnown RBP7.14□□□□□ -1.27
VCL-206ENST00000623461 JPT2Q9H910 190 aa7.14□□□□□ -1.27
VCL-206ENST00000623461 TRAV41A0A0B4J266 112 aa7.14□□□□□ -1.27
VCL-206ENST00000623461 PRSS29PA6NIE9 313 aa7.14□□□□□ -1.27
VCL-206ENST00000623461 I3L3M4 83 aa7.14□□□□□ -1.27
VCL-206ENST00000623461 LYPD6Q86Y78 171 aa7.14□□□□□ -1.27
VCL-206ENST00000623461 IGF2BP2-AS1Q96M15 143 aa7.14□□□□□ -1.27
VCL-206ENST00000623461 FAM223BA6NKX1 122 aa7.14□□□□□ -1.27
VCL-206ENST00000623461 IGHV3-11P01762 117 aa7.14□□□□□ -1.27
VCL-206ENST00000623461 RBX1P62877 108 aa7.14□□□□□ -1.27
VCL-206ENST00000623461 SRSF2Q01130 221 aaKnown RBP7.14□□□□□ -1.27
VCL-206ENST00000623461 STHQ8IWL8 128 aa7.14□□□□□ -1.27
VCL-206ENST00000623461 FAM223AQ8IWN6 122 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms