RNA–Protein interactions for RNA: ENST00000621897.1

BRCA1-229, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5

Gene BRCA1, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-229ENST00000621897 GAPVD1Q14C86 1478 aa2.14□□□□□ -2.07
BRCA1-229ENST00000621897 RPRD2Q5VT52 1461 aaKnown RBP2.14□□□□□ -2.07
BRCA1-229ENST00000621897 MAGI2Q86UL8 1455 aa2.14□□□□□ -2.07
BRCA1-229ENST00000621897 SCAF11Q99590 1463 aaKnown RBP2.14□□□□□ -2.07
BRCA1-229ENST00000621897 RBBP6Q7Z6E9 1792 aaKnown RBP2.13□□□□□ -2.07
BRCA1-229ENST00000621897 PTPRSQ13332 1948 aa2.13□□□□□ -2.07
BRCA1-229ENST00000621897 SCN8AQ9UQD0 1980 aa2.13□□□□□ -2.07
BRCA1-229ENST00000621897 IGKV1OR2-108A0A075B7D4 117 aa2.13□□□□□ -2.07
BRCA1-229ENST00000621897 IGHV3-15A0A0B4J1V0 119 aa2.13□□□□□ -2.07
BRCA1-229ENST00000621897 IGHV3-73A0A0B4J1V6 119 aa2.13□□□□□ -2.07
BRCA1-229ENST00000621897 A0A1W2PRS3 328 aa2.13□□□□□ -2.07
BRCA1-229ENST00000621897 C7orf66A4D0T2 115 aa2.13□□□□□ -2.07
BRCA1-229ENST00000621897 C19orf71A6NCJ1 209 aa2.13□□□□□ -2.07
BRCA1-229ENST00000621897 RPL36A-HNRNPH2H7BZ11 118 aa2.13□□□□□ -2.07
BRCA1-229ENST00000621897 HYPMO75409 117 aa2.13□□□□□ -2.07
BRCA1-229ENST00000621897 LINC00032P0C843 101 aa2.13□□□□□ -2.07
BRCA1-229ENST00000621897 IGLC1P0CG04 106 aa2.13□□□□□ -2.07
BRCA1-229ENST00000621897 SAA1P0DJI8 122 aaPredicted RBP2.13□□□□□ -2.07
BRCA1-229ENST00000621897 COX6A1P12074 109 aa2.13□□□□□ -2.07
BRCA1-229ENST00000621897 XCL1P47992 114 aa2.13□□□□□ -2.07
BRCA1-229ENST00000621897 DYNLT1P63172 113 aa2.13□□□□□ -2.07
BRCA1-229ENST00000621897 ZNF846Q147U1 533 aa2.13□□□□□ -2.07
BRCA1-229ENST00000621897 CHCHD2P9Q5T1J5 151 aaPredicted RBP2.13□□□□□ -2.07
BRCA1-229ENST00000621897 Q8NDZ9 215 aa2.13□□□□□ -2.07
BRCA1-229ENST00000621897 OR5AK2Q8NH90 309 aa2.13□□□□□ -2.07
BRCA1-229ENST00000621897 VAMP8Q9BV40 100 aa2.13□□□□□ -2.07
BRCA1-229ENST00000621897 PRO1933Q9H354 126 aa2.13□□□□□ -2.07
BRCA1-229ENST00000621897 BCL2L10Q9HD36 194 aa2.13□□□□□ -2.07
BRCA1-229ENST00000621897 AP4S1Q9Y587 144 aa2.13□□□□□ -2.07
BRCA1-229ENST00000621897 U3KQK5 164 aa2.13□□□□□ -2.07
BRCA1-229ENST00000621897 ABCA3Q99758 1704 aa2.13□□□□□ -2.07
BRCA1-229ENST00000621897 COL27A1Q8IZC6 1860 aaPredicted RBP2.13□□□□□ -2.07
BRCA1-229ENST00000621897 IFT140Q96RY7 1462 aa2.13□□□□□ -2.07
BRCA1-229ENST00000621897 PSME4Q14997 1843 aa2.12□□□□□ -2.07
BRCA1-229ENST00000621897 CLIP1P30622 1438 aa2.12□□□□□ -2.07
BRCA1-229ENST00000621897 LOC107986453A0A1B0GWG9 222 aa2.12□□□□□ -2.07
BRCA1-229ENST00000621897 A8MUU9 505 aa2.12□□□□□ -2.07
BRCA1-229ENST00000621897 G3V3Q6 166 aa2.12□□□□□ -2.07
BRCA1-229ENST00000621897 ZNF737O75373 536 aa2.12□□□□□ -2.07
BRCA1-229ENST00000621897 TRACP01848 142 aa2.12□□□□□ -2.07
BRCA1-229ENST00000621897 FABP4P15090 132 aa2.12□□□□□ -2.07
BRCA1-229ENST00000621897 BLCAPP62952 87 aa2.12□□□□□ -2.07
BRCA1-229ENST00000621897 SUPT4H1P63272 117 aaKnown RBP2.12□□□□□ -2.07
BRCA1-229ENST00000621897 CDK5R1Q15078 307 aa2.12□□□□□ -2.07
BRCA1-229ENST00000621897 KHDC3LQ587J8 217 aa2.12□□□□□ -2.07
BRCA1-229ENST00000621897 Q6ZQT7 251 aa2.12□□□□□ -2.07
BRCA1-229ENST00000621897 OR5AS1Q8N127 324 aa2.12□□□□□ -2.07
BRCA1-229ENST00000621897 LSM10Q969L4 123 aaKnown RBP2.12□□□□□ -2.07
BRCA1-229ENST00000621897 TMEM106BQ9NUM4 274 aa2.12□□□□□ -2.07
BRCA1-229ENST00000621897 NHP2Q9NX24 153 aaKnown RBP2.12□□□□□ -2.07
BRCA1-229ENST00000621897 TAS2R4Q9NYW5 299 aa2.12□□□□□ -2.07
BRCA1-229ENST00000621897 LINC00312Q9Y6C7 94 aa2.12□□□□□ -2.07
BRCA1-229ENST00000621897 FBN1P35555 2871 aaKnown RBP2.12□□□□□ -2.07
BRCA1-229ENST00000621897 KIDINS220Q9ULH0 1771 aa2.12□□□□□ -2.07
BRCA1-229ENST00000621897 LTBP4Q8N2S1 1624 aa2.12□□□□□ -2.07
BRCA1-229ENST00000621897 PXDNLA1KZ92 1463 aa2.12□□□□□ -2.07
BRCA1-229ENST00000621897 CCDC88BA6NC98 1476 aa2.12□□□□□ -2.07
BRCA1-229ENST00000621897 MCM3APO60318 1980 aa2.12□□□□□ -2.07
BRCA1-229ENST00000621897 COL5A1P20908 1838 aaPredicted RBP2.12□□□□□ -2.07
BRCA1-229ENST00000621897 HEATR5AQ86XA9 2040 aa2.12□□□□□ -2.07
BRCA1-229ENST00000621897 TRPM6Q9BX84 2022 aa2.12□□□□□ -2.07
BRCA1-229ENST00000621897 ARAP2Q8WZ64 1704 aa2.11□□□□□ -2.07
BRCA1-229ENST00000621897 HELZP42694 1942 aaKnown RBP2.11□□□□□ -2.07
BRCA1-229ENST00000621897 THOC2Q8NI27 1593 aaKnown RBP2.11□□□□□ -2.07
BRCA1-229ENST00000621897 SCN9AQ15858 1988 aa2.11□□□□□ -2.07
BRCA1-229ENST00000621897 IGKV1D-37A0A075B6S9 117 aa2.11□□□□□ -2.07
BRCA1-229ENST00000621897 A0A0B4J2C4 111 aa2.11□□□□□ -2.07
BRCA1-229ENST00000621897 A0A1W2PQD3 144 aa2.11□□□□□ -2.07
BRCA1-229ENST00000621897 OOSP1A8MZH6 123 aa2.11□□□□□ -2.07
BRCA1-229ENST00000621897 K7EM74 188 aa2.11□□□□□ -2.07
BRCA1-229ENST00000621897 LYRM1O43325 122 aa2.11□□□□□ -2.07
BRCA1-229ENST00000621897 CREBL2O60519 120 aaPredicted RBP2.11□□□□□ -2.07
BRCA1-229ENST00000621897 TIMM17BO60830 172 aa2.11□□□□□ -2.07
BRCA1-229ENST00000621897 GYPBP06028 91 aa2.11□□□□□ -2.07
BRCA1-229ENST00000621897 ZNF705BP0CI00 300 aaPredicted RBP2.11□□□□□ -2.07
BRCA1-229ENST00000621897 TRAPPC2P0DI81 140 aa2.11□□□□□ -2.07
BRCA1-229ENST00000621897 TRAPPC2BP0DI82 140 aa2.11□□□□□ -2.07
BRCA1-229ENST00000621897 SLC25A4P12235 298 aa2.11□□□□□ -2.07
BRCA1-229ENST00000621897 ETV6P41212 452 aa2.11□□□□□ -2.07
BRCA1-229ENST00000621897 PCBD1P61457 104 aa2.11□□□□□ -2.07
BRCA1-229ENST00000621897 FOXF1Q12946 379 aa2.11□□□□□ -2.07
BRCA1-229ENST00000621897 OR2T2Q6IF00 324 aa2.11□□□□□ -2.07
BRCA1-229ENST00000621897 Q6ZS92 163 aa2.11□□□□□ -2.07
BRCA1-229ENST00000621897 C2orf91Q6ZV80 131 aa2.11□□□□□ -2.07
BRCA1-229ENST00000621897 LINC00471Q8N535 108 aa2.11□□□□□ -2.07
BRCA1-229ENST00000621897 TMEM105Q8N8V8 129 aa2.11□□□□□ -2.07
BRCA1-229ENST00000621897 TUBGCP6Q96RT7 1819 aa2.11□□□□□ -2.07
BRCA1-229ENST00000621897 SCN1AP35498 2009 aa2.11□□□□□ -2.07
BRCA1-229ENST00000621897 MYO5AQ9Y4I1 1855 aaKnown RBP2.11□□□□□ -2.07
BRCA1-229ENST00000621897 MYLKQ15746 1914 aa2.11□□□□□ -2.07
BRCA1-229ENST00000621897 PARP14Q460N5 1801 aa2.1□□□□□ -2.07
BRCA1-229ENST00000621897 SBF2Q86WG5 1849 aa2.1□□□□□ -2.07
BRCA1-229ENST00000621897 CC2D2AQ9P2K1 1620 aa2.1□□□□□ -2.07
BRCA1-229ENST00000621897 PLXNA3P51805 1871 aa2.1□□□□□ -2.07
BRCA1-229ENST00000621897 TMEM235A6NFC5 223 aa2.1□□□□□ -2.07
BRCA1-229ENST00000621897 A6NN06 94 aa2.1□□□□□ -2.07
BRCA1-229ENST00000621897 ZNF736B4DX44 427 aaPredicted RBP2.1□□□□□ -2.07
BRCA1-229ENST00000621897 CPSF4O95639 269 aaKnown RBP2.1□□□□□ -2.07
BRCA1-229ENST00000621897 IL7P13232 177 aa2.1□□□□□ -2.07
BRCA1-229ENST00000621897 RPL28P46779 137 aaKnown RBP2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms