RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 CSN1S1P47710 185 aa11.98□□□□□ -0.49
CCDC28A-202ENST00000611852 ERCC8Q13216 396 aa11.98□□□□□ -0.49
CCDC28A-202ENST00000611852 C9orf47Q6ZRZ4 202 aa11.98□□□□□ -0.49
CCDC28A-202ENST00000611852 C1orf158Q8N1D5 194 aa11.98□□□□□ -0.49
CCDC28A-202ENST00000611852 Q8NAQ8 132 aa11.98□□□□□ -0.49
CCDC28A-202ENST00000611852 ODF3Q96PU9 254 aa11.98□□□□□ -0.49
CCDC28A-202ENST00000611852 AGPAT4-IT1Q9H0P7 198 aa11.98□□□□□ -0.49
CCDC28A-202ENST00000611852 MAP1LC3B2A6NCE7 125 aa11.97□□□□□ -0.49
CCDC28A-202ENST00000611852 MIFP14174 115 aa11.97□□□□□ -0.49
CCDC28A-202ENST00000611852 FGF8P55075 233 aaPredicted RBP11.97□□□□□ -0.49
CCDC28A-202ENST00000611852 IQCF2Q8IXL9 164 aa11.97□□□□□ -0.49
CCDC28A-202ENST00000611852 RXFP4Q8TDU9 374 aa11.97□□□□□ -0.49
CCDC28A-202ENST00000611852 LINC00477Q96M19 166 aa11.97□□□□□ -0.49
CCDC28A-202ENST00000611852 VGLL1Q99990 258 aa11.97□□□□□ -0.49
CCDC28A-202ENST00000611852 MAP1LC3BQ9GZQ8 125 aa11.97□□□□□ -0.49
CCDC28A-202ENST00000611852 TMPRSS5Q9H3S3 457 aa11.97□□□□□ -0.49
CCDC28A-202ENST00000611852 IGHV3OR16-12A0A075B7B8 117 aa11.96□□□□□ -0.49
CCDC28A-202ENST00000611852 DIRC3C9JPN6 131 aa11.96□□□□□ -0.49
CCDC28A-202ENST00000611852 INSP01308 110 aa11.96□□□□□ -0.49
CCDC28A-202ENST00000611852 NEU1Q99519 415 aa11.96□□□□□ -0.49
CCDC28A-202ENST00000611852 C11orf68Q9H3H3 251 aaKnown RBP11.96□□□□□ -0.49
CCDC28A-202ENST00000611852 GOLT1BQ9Y3E0 138 aa11.96□□□□□ -0.49
CCDC28A-202ENST00000611852 IGHV4-28A0A0C4DH34 117 aa11.96□□□□□ -0.5
CCDC28A-202ENST00000611852 RBAKDNA6NC62 111 aa11.96□□□□□ -0.5
CCDC28A-202ENST00000611852 TEX46H3BTG2 121 aa11.96□□□□□ -0.5
CCDC28A-202ENST00000611852 DEFB4AO15263 64 aa11.96□□□□□ -0.5
CCDC28A-202ENST00000611852 TSPOP30536 169 aa11.96□□□□□ -0.5
CCDC28A-202ENST00000611852 KIR3DS1Q14943 382 aa11.96□□□□□ -0.5
CCDC28A-202ENST00000611852 ARL6IP6Q8N6S5 226 aa11.96□□□□□ -0.5
CCDC28A-202ENST00000611852 MUC7Q8TAX7 377 aa11.96□□□□□ -0.5
CCDC28A-202ENST00000611852 CMTM2Q8TAZ6 248 aa11.96□□□□□ -0.5
CCDC28A-202ENST00000611852 SLC25A5P05141 298 aaKnown RBP11.95□□□□□ -0.5
CCDC28A-202ENST00000611852 RBMY1A1P0DJD3 496 aaKnown RBP11.95□□□□□ -0.5
CCDC28A-202ENST00000611852 RBMY1CP0DJD4 496 aa11.95□□□□□ -0.5
CCDC28A-202ENST00000611852 LEPP41159 167 aa11.95□□□□□ -0.5
CCDC28A-202ENST00000611852 RBMY1FQ15415 496 aaKnown RBP11.95□□□□□ -0.5
CCDC28A-202ENST00000611852 TMEM78Q5T7P6 136 aa11.95□□□□□ -0.5
CCDC28A-202ENST00000611852 MBD3L1Q8WWY6 194 aa11.95□□□□□ -0.5
CCDC28A-202ENST00000611852 FAM19A4Q96LR4 140 aa11.95□□□□□ -0.5
CCDC28A-202ENST00000611852 A0A1W2PRE2 83 aa11.94□□□□□ -0.5
CCDC28A-202ENST00000611852 RAB19A4D1S5 217 aa11.94□□□□□ -0.5
CCDC28A-202ENST00000611852 GGTLC3B5MD39 225 aa11.94□□□□□ -0.5
CCDC28A-202ENST00000611852 HBE1P02100 147 aa11.94□□□□□ -0.5
CCDC28A-202ENST00000611852 H2AFB1P0C5Y9 115 aa11.94□□□□□ -0.5
CCDC28A-202ENST00000611852 EIF4E3Q8N5X7 224 aaKnown RBP11.94□□□□□ -0.5
CCDC28A-202ENST00000611852 LYPD6BQ8NI32 183 aa11.94□□□□□ -0.5
CCDC28A-202ENST00000611852 TMEM208Q9BTX3 173 aa11.94□□□□□ -0.5
CCDC28A-202ENST00000611852 ZNF492Q9P255 531 aa11.94□□□□□ -0.5
CCDC28A-202ENST00000611852 SMIM9A6NGZ8 99 aa11.93□□□□□ -0.5
CCDC28A-202ENST00000611852 SUMO1P63165 101 aaKnown RBP11.93□□□□□ -0.5
CCDC28A-202ENST00000611852 GNG5P63218 68 aa11.93□□□□□ -0.5
CCDC28A-202ENST00000611852 GFI1BQ5VTD9 330 aa11.93□□□□□ -0.5
CCDC28A-202ENST00000611852 C5orf17Q8NAS9 161 aa11.93□□□□□ -0.5
CCDC28A-202ENST00000611852 SFT2D1Q8WV19 159 aa11.93□□□□□ -0.5
CCDC28A-202ENST00000611852 RPH3ALQ9UNE2 315 aa11.93□□□□□ -0.5
CCDC28A-202ENST00000611852 J3KRW8 73 aa11.92□□□□□ -0.5
CCDC28A-202ENST00000611852 CRISP2P16562 243 aa11.92□□□□□ -0.5
CCDC28A-202ENST00000611852 ZNF138P52744 262 aa11.92□□□□□ -0.5
CCDC28A-202ENST00000611852 UQCC3Q6UW78 93 aa11.92□□□□□ -0.5
CCDC28A-202ENST00000611852 GOLT1AQ6ZVE7 132 aa11.92□□□□□ -0.5
CCDC28A-202ENST00000611852 TMEM256Q8N2U0 113 aa11.92□□□□□ -0.5
CCDC28A-202ENST00000611852 IL17DQ8TAD2 202 aa11.92□□□□□ -0.5
CCDC28A-202ENST00000611852 Q8TAT8 98 aa11.92□□□□□ -0.5
CCDC28A-202ENST00000611852 YTHDF2Q9Y5A9 579 aaKnown RBP11.92□□□□□ -0.5
CCDC28A-202ENST00000611852 FAM74A7A6NL05 159 aa11.91□□□□□ -0.5
CCDC28A-202ENST00000611852 KLLNB2CW77 178 aa11.91□□□□□ -0.5
CCDC28A-202ENST00000611852 UBE2G2P60604 165 aa11.91□□□□□ -0.5
CCDC28A-202ENST00000611852 C20orf144Q9BQM9 153 aa11.91□□□□□ -0.5
CCDC28A-202ENST00000611852 TRBV7-9A0A0J9YWB2 115 aa11.91□□□□□ -0.5
CCDC28A-202ENST00000611852 C3orf84H3BNL1 204 aa11.91□□□□□ -0.5
CCDC28A-202ENST00000611852 TCRAP04437 139 aa11.91□□□□□ -0.5
CCDC28A-202ENST00000611852 RRN3P1Q2M238 152 aa11.91□□□□□ -0.5
CCDC28A-202ENST00000611852 ZFAND2AQ8N6M9 145 aa11.91□□□□□ -0.5
CCDC28A-202ENST00000611852 LINC01587Q99440 93 aa11.91□□□□□ -0.5
CCDC28A-202ENST00000611852 EPDR1Q9UM22 224 aa11.91□□□□□ -0.5
CCDC28A-202ENST00000611852 TRAV1-1A0A0B4J248 108 aa11.9□□□□□ -0.5
CCDC28A-202ENST00000611852 TRAV12-3A0A0B4J271 114 aa11.9□□□□□ -0.5
CCDC28A-202ENST00000611852 A0A1B0GV50 99 aa11.9□□□□□ -0.5
CCDC28A-202ENST00000611852 SERTM2A0A1B0GWG4 89 aa11.9□□□□□ -0.5
CCDC28A-202ENST00000611852 PRM2P04554 102 aa11.9□□□□□ -0.5
CCDC28A-202ENST00000611852 NKX6-2Q9C056 277 aaPredicted RBP11.9□□□□□ -0.5
CCDC28A-202ENST00000611852 TRAV8-1A0A0A6YYK1 113 aa11.89□□□□□ -0.51
CCDC28A-202ENST00000611852 C7orf71A4D174 169 aa11.89□□□□□ -0.51
CCDC28A-202ENST00000611852 ZNF705GA8MUZ8 300 aaPredicted RBP11.89□□□□□ -0.51
CCDC28A-202ENST00000611852 H7BYZ3 331 aa11.89□□□□□ -0.51
CCDC28A-202ENST00000611852 GPX1P07203 203 aa11.89□□□□□ -0.51
CCDC28A-202ENST00000611852 TAS2R60P59551 318 aa11.89□□□□□ -0.51
CCDC28A-202ENST00000611852 TOR2AQ5JU69 321 aa11.89□□□□□ -0.51
CCDC28A-202ENST00000611852 PRR9Q5T870 116 aa11.89□□□□□ -0.51
CCDC28A-202ENST00000611852 LENEPQ9Y5L5 61 aa11.89□□□□□ -0.51
CCDC28A-202ENST00000611852 DNAH7Q8WXX0 4024 aa11.89□□□□□ -0.51
CCDC28A-202ENST00000611852 LOC102723971A0A1B0GUV8 181 aa11.88□□□□□ -0.51
CCDC28A-202ENST00000611852 TMEM189A5PLL7 270 aa11.88□□□□□ -0.51
CCDC28A-202ENST00000611852 RNASE4P34096 147 aaKnown RBP11.88□□□□□ -0.51
CCDC28A-202ENST00000611852 BTN1A1Q13410 526 aa11.88□□□□□ -0.51
CCDC28A-202ENST00000611852 C11orf45Q8TAV5 145 aa11.88□□□□□ -0.51
CCDC28A-202ENST00000611852 ATG101Q9BSB4 218 aa11.88□□□□□ -0.51
CCDC28A-202ENST00000611852 ARL2-SNX15V9GYD0 113 aa11.88□□□□□ -0.51
CCDC28A-202ENST00000611852 KRBOX1C9JBD0 128 aa11.87□□□□□ -0.51
CCDC28A-202ENST00000611852 K7EQM0 130 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms