RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 IGHV3-66A0A0C4DH42 116 aa14.37□□□□□ -0.11
UPF1-210ENST00000600689 K7EIM0 57 aa14.37□□□□□ -0.11
UPF1-210ENST00000600689 OR4X2Q8NGF9 303 aa14.37□□□□□ -0.11
UPF1-210ENST00000600689 TMEM14CQ9P0S9 112 aa14.37□□□□□ -0.11
UPF1-210ENST00000600689 H3BRN7 92 aa14.36□□□□□ -0.11
UPF1-210ENST00000600689 COL25A1Q9BXS0 654 aaPredicted RBP14.36□□□□□ -0.11
UPF1-210ENST00000600689 SFTA2Q6UW10 78 aa14.36□□□□□ -0.11
UPF1-210ENST00000600689 NEGR1Q7Z3B1 354 aa14.36□□□□□ -0.11
UPF1-210ENST00000600689 CHAC1Q9BUX1 264 aa14.36□□□□□ -0.11
UPF1-210ENST00000600689 RBPJQ06330 500 aa14.35□□□□□ -0.11
UPF1-210ENST00000600689 ERCC8Q13216 396 aa14.35□□□□□ -0.11
UPF1-210ENST00000600689 WFDC2Q14508 124 aa14.35□□□□□ -0.11
UPF1-210ENST00000600689 ZC2HC1BQ5TFG8 222 aa14.35□□□□□ -0.11
UPF1-210ENST00000600689 SH2D6Q7Z4S9 175 aa14.35□□□□□ -0.11
UPF1-210ENST00000600689 ONECUT1Q9UBC0 465 aa14.35□□□□□ -0.11
UPF1-210ENST00000600689 ATRXP46100 2492 aa14.35□□□□□ -0.11
UPF1-210ENST00000600689 Q5PR19 223 aa14.35□□□□□ -0.11
UPF1-210ENST00000600689 TIMM23O14925 209 aa14.35□□□□□ -0.11
UPF1-210ENST00000600689 HOXB4P17483 251 aaPredicted RBP14.35□□□□□ -0.11
UPF1-210ENST00000600689 AZU1P20160 251 aa14.35□□□□□ -0.11
UPF1-210ENST00000600689 DLX6P56179 175 aa14.35□□□□□ -0.11
UPF1-210ENST00000600689 LINC00311Q8N616 119 aa14.34□□□□□ -0.11
UPF1-210ENST00000600689 AKAP6Q13023 2319 aa14.34□□□□□ -0.11
UPF1-210ENST00000600689 TRAV26-2A0A0B4J265 109 aa14.34□□□□□ -0.11
UPF1-210ENST00000600689 LY6HO94772 140 aa14.34□□□□□ -0.11
UPF1-210ENST00000600689 KLK15Q9H2R5 256 aa14.34□□□□□ -0.11
UPF1-210ENST00000600689 TSSC4Q9Y5U2 329 aaPredicted RBP14.34□□□□□ -0.11
UPF1-210ENST00000600689 WI2-2373I1.2A0A1W2PRP0 233 aa14.33□□□□□ -0.11
UPF1-210ENST00000600689 BUB1B-PAK6H3BSN5 160 aa14.33□□□□□ -0.11
UPF1-210ENST00000600689 SPRY2O43597 315 aa14.33□□□□□ -0.11
UPF1-210ENST00000600689 TMEM158Q8WZ71 300 aa14.33□□□□□ -0.11
UPF1-210ENST00000600689 MAP1LC3AQ9H492 121 aa14.33□□□□□ -0.11
UPF1-210ENST00000600689 IGHV3-49A0A0A0MS15 119 aa14.33□□□□□ -0.12
UPF1-210ENST00000600689 TRAV40A0A0B4J280 105 aa14.33□□□□□ -0.12
UPF1-210ENST00000600689 H3BMG7 143 aa14.33□□□□□ -0.12
UPF1-210ENST00000600689 CRYGBP07316 175 aa14.33□□□□□ -0.12
UPF1-210ENST00000600689 DEFB104AQ8WTQ1 72 aa14.33□□□□□ -0.12
UPF1-210ENST00000600689 AGRNO00468 2067 aa14.33□□□□□ -0.12
UPF1-210ENST00000600689 ZNF493Q6ZR52 646 aa14.33□□□□□ -0.12
UPF1-210ENST00000600689 OR5A1Q8NGJ0 315 aa14.33□□□□□ -0.12
UPF1-210ENST00000600689 ARPC1AQ92747 370 aa14.33□□□□□ -0.12
UPF1-210ENST00000600689 SPTBN4Q9H254 2564 aa14.32□□□□□ -0.12
UPF1-210ENST00000600689 A0A1B0GW15 77 aa14.32□□□□□ -0.12
UPF1-210ENST00000600689 J3KRW8 73 aa14.32□□□□□ -0.12
UPF1-210ENST00000600689 ETDBQ3ZM63 59 aa14.32□□□□□ -0.12
UPF1-210ENST00000600689 Q6AWC8 147 aa14.32□□□□□ -0.12
UPF1-210ENST00000600689 WFDC12Q8WWY7 111 aa14.32□□□□□ -0.12
UPF1-210ENST00000600689 RNASE6Q93091 150 aaKnown RBP14.32□□□□□ -0.12
UPF1-210ENST00000600689 TRBV25-1A0A075B6N4 114 aa14.32□□□□□ -0.12
UPF1-210ENST00000600689 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.32□□□□□ -0.12
UPF1-210ENST00000600689 K7ENP7 123 aa14.32□□□□□ -0.12
UPF1-210ENST00000600689 PRR25Q96S07 402 aa14.32□□□□□ -0.12
UPF1-210ENST00000600689 UFC1Q9Y3C8 167 aa14.32□□□□□ -0.12
UPF1-210ENST00000600689 ASH1LQ9NR48 2969 aaKnown RBP14.31□□□□□ -0.12
UPF1-210ENST00000600689 TMEM8BA6NDV4 472 aa14.31□□□□□ -0.12
UPF1-210ENST00000600689 NDUFA3O95167 84 aa14.31□□□□□ -0.12
UPF1-210ENST00000600689 KLRD1Q13241 179 aa14.31□□□□□ -0.12
UPF1-210ENST00000600689 RNF182Q8N6D2 247 aa14.31□□□□□ -0.12
UPF1-210ENST00000600689 NCBP2LA6PVI3 153 aaKnown RBP14.3□□□□□ -0.12
UPF1-210ENST00000600689 ODF1Q14990 250 aa14.3□□□□□ -0.12
UPF1-210ENST00000600689 ZNF562Q6V9R5 426 aa14.3□□□□□ -0.12
UPF1-210ENST00000600689 TNFRSF6BO95407 300 aa14.3□□□□□ -0.12
UPF1-210ENST00000600689 MAPKAPK5-AS1Q8N8E1 139 aa14.3□□□□□ -0.12
UPF1-210ENST00000600689 IGKCP01834 107 aa14.3□□□□□ -0.12
UPF1-210ENST00000600689 SHISA9B4DS77 424 aa14.29□□□□□ -0.12
UPF1-210ENST00000600689 E7EQL1 145 aa14.29□□□□□ -0.12
UPF1-210ENST00000600689 PRAC2D3DTV9 90 aa14.29□□□□□ -0.12
UPF1-210ENST00000600689 IGLV1-47P01700 117 aa14.29□□□□□ -0.12
UPF1-210ENST00000600689 MRPL35Q9NZE8 188 aaKnown RBP14.29□□□□□ -0.12
UPF1-210ENST00000600689 RALYQ9UKM9 306 aaKnown RBP14.29□□□□□ -0.12
UPF1-210ENST00000600689 U3KQK5 164 aa14.29□□□□□ -0.12
UPF1-210ENST00000600689 MRPS12O15235 138 aaKnown RBP14.28□□□□□ -0.12
UPF1-210ENST00000600689 EFNA4P52798 201 aa14.28□□□□□ -0.12
UPF1-210ENST00000600689 Q6ZQT7 251 aa14.28□□□□□ -0.12
UPF1-210ENST00000600689 HHLA3Q9XRX5 114 aa14.28□□□□□ -0.12
UPF1-210ENST00000600689 GRNP28799 593 aaKnown RBP14.28□□□□□ -0.12
UPF1-210ENST00000600689 DPF1Q92782 380 aa14.28□□□□□ -0.12
UPF1-210ENST00000600689 TRGV3P03979 118 aa14.28□□□□□ -0.12
UPF1-210ENST00000600689 RNF185Q96GF1 192 aa14.28□□□□□ -0.12
UPF1-210ENST00000600689 INSL3P51460 131 aa14.27□□□□□ -0.12
UPF1-210ENST00000600689 PAX8Q06710 450 aa14.27□□□□□ -0.12
UPF1-210ENST00000600689 PVRIGQ6DKI7 326 aa14.27□□□□□ -0.12
UPF1-210ENST00000600689 LINC01560Q8TB33 94 aa14.27□□□□□ -0.12
UPF1-210ENST00000600689 ZNF479Q96JC4 524 aa14.27□□□□□ -0.13
UPF1-210ENST00000600689 HIST1H4GQ99525 98 aa14.27□□□□□ -0.13
UPF1-210ENST00000600689 SIVA1O15304 175 aa14.26□□□□□ -0.13
UPF1-210ENST00000600689 GATD1Q8NB37 220 aa14.26□□□□□ -0.13
UPF1-210ENST00000600689 HRNRQ86YZ3 2850 aaPredicted RBP14.26□□□□□ -0.13
UPF1-210ENST00000600689 ATP5G2Q06055 141 aa14.26□□□□□ -0.13
UPF1-210ENST00000600689 SIGMAR1Q99720 223 aa14.26□□□□□ -0.13
UPF1-210ENST00000600689 SMIM17P0DL12 118 aa14.25□□□□□ -0.13
UPF1-210ENST00000600689 DYNAPQ8N1N2 210 aa14.25□□□□□ -0.13
UPF1-210ENST00000600689 IL17RELQ6ZVW7 336 aa14.25□□□□□ -0.13
UPF1-210ENST00000600689 LYPD1Q8N2G4 141 aa14.25□□□□□ -0.13
UPF1-210ENST00000600689 CHD8Q9HCK8 2581 aa14.24□□□□□ -0.13
UPF1-210ENST00000600689 ANKHD1Q8IWZ3 2542 aaKnown RBP14.24□□□□□ -0.13
UPF1-210ENST00000600689 FAM90A27PA6NNH2 459 aa14.24□□□□□ -0.13
UPF1-210ENST00000600689 DPM2O94777 84 aa14.24□□□□□ -0.13
UPF1-210ENST00000600689 DTX2Q86UW9 622 aa14.24□□□□□ -0.13
UPF1-210ENST00000600689 CEND1Q8N111 149 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms