RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 TRBV7-9A0A0J9YWB2 115 aa18.59■□□□□ 0.57
TRIM28-204ENST00000594806 NMBP08949 121 aa18.59■□□□□ 0.57
TRIM28-204ENST00000594806 SSX7Q7RTT5 188 aa18.59■□□□□ 0.57
TRIM28-204ENST00000594806 IGKV2-40A0A087WW87 121 aaPredicted RBP18.58■□□□□ 0.56
TRIM28-204ENST00000594806 DIRC3C9JPN6 131 aa18.58■□□□□ 0.56
TRIM28-204ENST00000594806 IGKV2D-40P01614 121 aaPredicted RBP18.58■□□□□ 0.56
TRIM28-204ENST00000594806 ERCC8Q13216 396 aa18.58■□□□□ 0.56
TRIM28-204ENST00000594806 RRN3P1Q2M238 152 aa18.58■□□□□ 0.56
TRIM28-204ENST00000594806 EIF5AL1Q6IS14 154 aaKnown RBP18.58■□□□□ 0.56
TRIM28-204ENST00000594806 DPPA3Q6W0C5 159 aa18.58■□□□□ 0.56
TRIM28-204ENST00000594806 C11orf45Q8TAV5 145 aa18.58■□□□□ 0.56
TRIM28-204ENST00000594806 FAM19A4Q96LR4 140 aa18.58■□□□□ 0.56
TRIM28-204ENST00000594806 DEFB4AO15263 64 aa18.57■□□□□ 0.56
TRIM28-204ENST00000594806 ZNF492Q9P255 531 aa18.57■□□□□ 0.56
TRIM28-204ENST00000594806 A0A1W2PRE2 83 aa18.56■□□□□ 0.56
TRIM28-204ENST00000594806 CRISP2P16562 243 aa18.56■□□□□ 0.56
TRIM28-204ENST00000594806 TMED6Q8WW62 240 aa18.56■□□□□ 0.56
TRIM28-204ENST00000594806 LINC01587Q99440 93 aa18.56■□□□□ 0.56
TRIM28-204ENST00000594806 VGLL1Q99990 258 aa18.56■□□□□ 0.56
TRIM28-204ENST00000594806 A0A1B0GVG6 124 aa18.55■□□□□ 0.56
TRIM28-204ENST00000594806 SERTM2A0A1B0GWG4 89 aa18.55■□□□□ 0.56
TRIM28-204ENST00000594806 MAP1LC3B2A6NCE7 125 aa18.55■□□□□ 0.56
TRIM28-204ENST00000594806 H7BYZ3 331 aa18.55■□□□□ 0.56
TRIM28-204ENST00000594806 ZNF138P52744 262 aa18.55■□□□□ 0.56
TRIM28-204ENST00000594806 TAS2R60P59551 318 aa18.55■□□□□ 0.56
TRIM28-204ENST00000594806 ZFP69Q49AA0 526 aa18.55■□□□□ 0.56
TRIM28-204ENST00000594806 IQCF2Q8IXL9 164 aa18.55■□□□□ 0.56
TRIM28-204ENST00000594806 C5orf17Q8NAS9 161 aa18.55■□□□□ 0.56
TRIM28-204ENST00000594806 NKX6-2Q9C056 277 aaPredicted RBP18.55■□□□□ 0.56
TRIM28-204ENST00000594806 MAP1LC3BQ9GZQ8 125 aa18.55■□□□□ 0.56
TRIM28-204ENST00000594806 LENEPQ9Y5L5 61 aa18.55■□□□□ 0.56
TRIM28-204ENST00000594806 KLLNB2CW77 178 aa18.54■□□□□ 0.56
TRIM28-204ENST00000594806 GFI1BQ5VTD9 330 aa18.54■□□□□ 0.56
TRIM28-204ENST00000594806 ZFAND6Q6FIF0 208 aa18.54■□□□□ 0.56
TRIM28-204ENST00000594806 SLC51BQ86UW2 128 aa18.54■□□□□ 0.56
TRIM28-204ENST00000594806 TEX48A0A1B0GUV7 120 aa18.53■□□□□ 0.56
TRIM28-204ENST00000594806 LOC102723971A0A1B0GUV8 181 aa18.53■□□□□ 0.56
TRIM28-204ENST00000594806 PLA2G2EQ9NZK7 142 aa18.53■□□□□ 0.56
TRIM28-204ENST00000594806 CXorf65A6NEN9 183 aa18.52■□□□□ 0.56
TRIM28-204ENST00000594806 RAB5CP51148 216 aa18.52■□□□□ 0.56
TRIM28-204ENST00000594806 MBD3L1Q8WWY6 194 aa18.52■□□□□ 0.56
TRIM28-204ENST00000594806 NIPSNAP3BQ9BS92 247 aa18.52■□□□□ 0.56
TRIM28-204ENST00000594806 C7orf71A4D174 169 aa18.51■□□□□ 0.55
TRIM28-204ENST00000594806 NUPR2A6NF83 97 aa18.51■□□□□ 0.55
TRIM28-204ENST00000594806 K7EQM0 130 aa18.51■□□□□ 0.55
TRIM28-204ENST00000594806 GPX1P07203 203 aa18.51■□□□□ 0.55
TRIM28-204ENST00000594806 SUMO1P63165 101 aaKnown RBP18.51■□□□□ 0.55
TRIM28-204ENST00000594806 KIR3DS1Q14943 382 aa18.51■□□□□ 0.55
TRIM28-204ENST00000594806 SPART-AS1P0CW21 52 aa18.5■□□□□ 0.55
TRIM28-204ENST00000594806 FHITP49789 147 aa18.5■□□□□ 0.55
TRIM28-204ENST00000594806 FGF8P55075 233 aaPredicted RBP18.5■□□□□ 0.55
TRIM28-204ENST00000594806 CD300CQ08708 224 aa18.5■□□□□ 0.55
TRIM28-204ENST00000594806 ZNF493Q6ZR52 646 aa18.5■□□□□ 0.55
TRIM28-204ENST00000594806 C9orf62Q8N4C0 152 aa18.5■□□□□ 0.55
TRIM28-204ENST00000594806 FAM213BQ8TBF2 198 aa18.5■□□□□ 0.55
TRIM28-204ENST00000594806 ZNF705GA8MUZ8 300 aaPredicted RBP18.49■□□□□ 0.55
TRIM28-204ENST00000594806 J3KRW8 73 aa18.49■□□□□ 0.55
TRIM28-204ENST00000594806 NANOS2P60321 138 aaKnown RBP18.49■□□□□ 0.55
TRIM28-204ENST00000594806 GOLT1AQ6ZVE7 132 aa18.49■□□□□ 0.55
TRIM28-204ENST00000594806 ZFAND2AQ8N6M9 145 aa18.49■□□□□ 0.55
TRIM28-204ENST00000594806 PYGO2Q9BRQ0 406 aa18.49■□□□□ 0.55
TRIM28-204ENST00000594806 TMPRSS5Q9H3S3 457 aa18.49■□□□□ 0.55
TRIM28-204ENST00000594806 RPH3ALQ9UNE2 315 aa18.49■□□□□ 0.55
TRIM28-204ENST00000594806 ARL2-SNX15V9GYD0 113 aa18.49■□□□□ 0.55
TRIM28-204ENST00000594806 TRAV12-3A0A0B4J271 114 aa18.48■□□□□ 0.55
TRIM28-204ENST00000594806 FBLL1A6NHQ2 334 aaKnown RBP18.48■□□□□ 0.55
TRIM28-204ENST00000594806 GGTLC3B5MD39 225 aa18.48■□□□□ 0.55
TRIM28-204ENST00000594806 C11orf94C9JXX5 98 aa18.48■□□□□ 0.55
TRIM28-204ENST00000594806 TCRAP04437 139 aa18.48■□□□□ 0.55
TRIM28-204ENST00000594806 PMS2P11Q13670 270 aa18.48■□□□□ 0.55
TRIM28-204ENST00000594806 SFT2D1Q8WV19 159 aa18.48■□□□□ 0.55
TRIM28-204ENST00000594806 C16orf74Q96GX8 76 aa18.48■□□□□ 0.55
TRIM28-204ENST00000594806 EPDR1Q9UM22 224 aa18.48■□□□□ 0.55
TRIM28-204ENST00000594806 H2AFB1P0C5Y9 115 aa18.47■□□□□ 0.55
TRIM28-204ENST00000594806 EMP1P54849 157 aa18.47■□□□□ 0.55
TRIM28-204ENST00000594806 CEMP1Q6PRD7 247 aaPredicted RBP18.47■□□□□ 0.55
TRIM28-204ENST00000594806 CCDC28AQ8IWP9 274 aa18.47■□□□□ 0.55
TRIM28-204ENST00000594806 PHLDA1Q8WV24 401 aaPredicted RBP18.47■□□□□ 0.55
TRIM28-204ENST00000594806 FAM74A7A6NL05 159 aa18.46■□□□□ 0.55
TRIM28-204ENST00000594806 ZNF324O75467 553 aaPredicted RBP18.46■□□□□ 0.55
TRIM28-204ENST00000594806 RNASE4P34096 147 aaKnown RBP18.46■□□□□ 0.55
TRIM28-204ENST00000594806 GNG5P63218 68 aa18.46■□□□□ 0.55
TRIM28-204ENST00000594806 Q8TAT8 98 aa18.46■□□□□ 0.55
TRIM28-204ENST00000594806 TMEM263Q8WUH6 116 aaKnown RBP18.46■□□□□ 0.55
TRIM28-204ENST00000594806 LINC00467Q9BRT7 94 aa18.46■□□□□ 0.55
TRIM28-204ENST00000594806 DKK2Q9UBU2 259 aa18.46■□□□□ 0.55
TRIM28-204ENST00000594806 KLK5Q9Y337 293 aaPredicted RBP18.46■□□□□ 0.55
TRIM28-204ENST00000594806 YTHDF2Q9Y5A9 579 aaKnown RBP18.46■□□□□ 0.55
TRIM28-204ENST00000594806 PPT1P50897 306 aa18.45■□□□□ 0.54
TRIM28-204ENST00000594806 CYB561D1Q8N8Q1 229 aa18.45■□□□□ 0.54
TRIM28-204ENST00000594806 TCEAL7Q9BRU2 100 aa18.45■□□□□ 0.54
TRIM28-204ENST00000594806 ATG101Q9BSB4 218 aa18.45■□□□□ 0.54
TRIM28-204ENST00000594806 CELA1Q9UNI1 258 aa18.45■□□□□ 0.54
TRIM28-204ENST00000594806 LYRM9A8MSI8 78 aa18.44■□□□□ 0.54
TRIM28-204ENST00000594806 HTN1P15515 57 aa18.44■□□□□ 0.54
TRIM28-204ENST00000594806 SULT1A2P50226 295 aa18.44■□□□□ 0.54
TRIM28-204ENST00000594806 UBE2G2P60604 165 aa18.44■□□□□ 0.54
TRIM28-204ENST00000594806 BTN1A1Q13410 526 aa18.44■□□□□ 0.54
TRIM28-204ENST00000594806 FAM222AQ5U5X8 452 aa18.44■□□□□ 0.54
TRIM28-204ENST00000594806 IFNA7P01567 189 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 175.9 ms