RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	TRBV7-1	A0A0A6YYK4	115 aa		2.82	□□□□□ -1.96
VMP1-216	ENST00000592790	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	2.82	□□□□□ -1.96
VMP1-216	ENST00000592790		A8MWV9	139 aa		2.82	□□□□□ -1.96
VMP1-216	ENST00000592790	CEACAM8	P31997	349 aa	Predicted RBP	2.82	□□□□□ -1.96
VMP1-216	ENST00000592790	RIPPLY3	P57055	190 aa		2.82	□□□□□ -1.96
VMP1-216	ENST00000592790	ZC2HC1B	Q5TFG8	222 aa		2.82	□□□□□ -1.96
VMP1-216	ENST00000592790	PATE2	Q6UY27	113 aa		2.82	□□□□□ -1.96
VMP1-216	ENST00000592790		Q6ZS92	163 aa		2.82	□□□□□ -1.96
VMP1-216	ENST00000592790	AMN1	Q8IY45	258 aa		2.82	□□□□□ -1.96
VMP1-216	ENST00000592790	ZC2HC1A	Q96GY0	325 aa		2.82	□□□□□ -1.96
VMP1-216	ENST00000592790	PRR25	Q96S07	402 aa		2.82	□□□□□ -1.96
VMP1-216	ENST00000592790	VGLL1	Q99990	258 aa		2.82	□□□□□ -1.96
VMP1-216	ENST00000592790	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	2.82	□□□□□ -1.96	4e-18	■■■■■ 97.3
VMP1-216	ENST00000592790	TIMM23	O14925	209 aa		2.82	□□□□□ -1.96
VMP1-216	ENST00000592790	ECSCR	Q19T08	205 aa		2.82	□□□□□ -1.96
VMP1-216	ENST00000592790	TTC32	Q5I0X7	151 aa		2.82	□□□□□ -1.96
VMP1-216	ENST00000592790	CEND1	Q8N111	149 aa		2.82	□□□□□ -1.96
VMP1-216	ENST00000592790	TMEM105	Q8N8V8	129 aa		2.82	□□□□□ -1.96
VMP1-216	ENST00000592790	GATD1	Q8NB37	220 aa		2.82	□□□□□ -1.96
VMP1-216	ENST00000592790	C1orf159	Q96HA4	380 aa		2.82	□□□□□ -1.96
VMP1-216	ENST00000592790	DPH3P1	Q9H4G8	78 aa		2.82	□□□□□ -1.96
VMP1-216	ENST00000592790	CACNA1A	O00555	2505 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	BOD1L1	Q8NFC6	3051 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	CHD9	Q3L8U1	2897 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	CSMD3	Q7Z407	3707 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	IGKV1OR2-108	A0A075B7D4	117 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	TRAV8-1	A0A0A6YYK1	113 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790		H3BVH4	76 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	EVI2A	P22794	236 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	MYCNOS	P40205	109 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	ADAMTSL5	Q6ZMM2	481 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	TMEM158	Q8WZ71	300 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	C20orf78	Q9BR46	151 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	NPFFR1	Q9GZQ6	430 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790		G3V4G9	280 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	NDUFS7	O75251	213 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	PROP1	O75360	226 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	FSTL3	O95633	263 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	LOX	P28300	417 aa	Predicted RBP	2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	CIRBP	Q14011	172 aa	Known RBP	2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	FAM159A	Q6UWV7	190 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	KIR3DL3	Q8N743	410 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	PIFO	Q8TCI5	191 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	GTSF1	Q8WW33	167 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	YAE1D1	Q9NRH1	226 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	ZNF815P	A8K554	130 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790		F8VRH5	84 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	NDUFA3	O95167	84 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	LINC00310	P59036	64 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	SSBP2	P81877	361 aa	Predicted RBP	2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	FAM106A	Q4KMX7	169 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	SIGLEC15	Q6ZMC9	328 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	TEX29	Q8N6K0	151 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790		Q8N976	141 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	ATP6V0E2	Q8NHE4	81 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	TMEM141	Q96I45	108 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	VKORC1	Q9BQB6	163 aa		2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	ZNF256	Q9Y2P7	627 aa	Predicted RBP	2.81	□□□□□ -1.96
VMP1-216	ENST00000592790	DCHS1	Q96JQ0	3298 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	IGKV2-40	A0A087WW87	121 aa	Predicted RBP	2.8	□□□□□ -1.96
VMP1-216	ENST00000592790		A0A087WX48	190 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	TRAV12-1	A0A0B4J245	112 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	SPAAR	A0A1B0GVQ0	90 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	TSPAN13	O95857	204 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	IGKV2D-40	P01614	121 aa	Predicted RBP	2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	CKS1B	P61024	79 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	GTSCR1	Q86UQ5	136 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	ZNF491	Q8N8L2	437 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	PPDPFL	Q8WWR9	84 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	PLEKHB2	Q96CS7	222 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	ADAMTS20	P59510	1910 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	MYMX	A0A1B0GTQ4	84 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	TMEM8B	A6NDV4	472 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	FAM223B	A6NKX1	122 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	FAM90A27P	A6NNH2	459 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790		I3L2K1	104 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	WISP2	O76076	250 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	IGLV2-23	P01705	113 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	PRTN3	P24158	256 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	KHDC1L	Q5JSQ8	128 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	FAM223A	Q8IWN6	122 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	FAM110D	Q8TAY7	271 aa	Predicted RBP	2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	IGKV1D-37	A0A075B6S9	117 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	IGHV1-69D	A0A0B4J2H0	117 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	WI2-2373I1.2	A0A1W2PRP0	233 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	TMEM213	A2RRL7	107 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	GAGE12H	A6NDE8	117 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	VCY	O14598	125 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	NCR2	O95944	276 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	TNP2	Q05952	138 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	ZFAND6	Q6FIF0	208 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	NPB	Q8NG41	125 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	ZMAT4	Q9H898	229 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790		U3KQK5	164 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	DNAJC13	O75165	2243 aa		2.8	□□□□□ -1.96
VMP1-216	ENST00000592790	NPY	P01303	97 aa		2.79	□□□□□ -1.96
VMP1-216	ENST00000592790	SNRPD3	P62318	126 aa	Known RBP	2.79	□□□□□ -1.96
VMP1-216	ENST00000592790	TMEM170B	Q5T4T1	132 aa		2.79	□□□□□ -1.96
VMP1-216	ENST00000592790	MORN5	Q5VZ52	161 aa		2.79	□□□□□ -1.96
VMP1-216	ENST00000592790	FOXI2	Q6ZQN5	318 aa		2.79	□□□□□ -1.96

Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms