RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 CCSO14618 274 aa8.13□□□□□ -1.11
LIG3-209ENST00000586435 CST7O76096 145 aa8.13□□□□□ -1.11
LIG3-209ENST00000586435 NDUFB4O95168 129 aa8.13□□□□□ -1.11
LIG3-209ENST00000586435 NMBP08949 121 aa8.13□□□□□ -1.11
LIG3-209ENST00000586435 HIST1H1EP10412 219 aaKnown RBP8.13□□□□□ -1.11
LIG3-209ENST00000586435 IL7P13232 177 aa8.13□□□□□ -1.11
LIG3-209ENST00000586435 BCAP31P51572 246 aa8.13□□□□□ -1.11
LIG3-209ENST00000586435 CAV2P51636 162 aa8.13□□□□□ -1.11
LIG3-209ENST00000586435 BTN1A1Q13410 526 aa8.13□□□□□ -1.11
LIG3-209ENST00000586435 C9orf47Q6ZRZ4 202 aa8.13□□□□□ -1.11
LIG3-209ENST00000586435 ST6GAL2Q96JF0 529 aa8.13□□□□□ -1.11
LIG3-209ENST00000586435 PGPEP1Q9NXJ5 209 aa8.13□□□□□ -1.11
LIG3-209ENST00000586435 ICOSQ9Y6W8 199 aa8.13□□□□□ -1.11
LIG3-209ENST00000586435 UBE2L5PA0A1B0GUS4 154 aa8.12□□□□□ -1.11
LIG3-209ENST00000586435 FAM24AA6NFZ4 105 aa8.12□□□□□ -1.11
LIG3-209ENST00000586435 MPDU1O75352 247 aa8.12□□□□□ -1.11
LIG3-209ENST00000586435 PVALBP20472 110 aaPredicted RBP8.12□□□□□ -1.11
LIG3-209ENST00000586435 S100A11P31949 105 aa8.12□□□□□ -1.11
LIG3-209ENST00000586435 SULT1A1P50225 295 aa8.12□□□□□ -1.11
LIG3-209ENST00000586435 BAXQ07812 192 aa8.12□□□□□ -1.11
LIG3-209ENST00000586435 CD300CQ08708 224 aa8.12□□□□□ -1.11
LIG3-209ENST00000586435 ERCC8Q13216 396 aa8.12□□□□□ -1.11
LIG3-209ENST00000586435 AGPAT4-IT1Q9H0P7 198 aa8.12□□□□□ -1.11
LIG3-209ENST00000586435 LYRM2Q9NU23 88 aaPredicted RBP8.12□□□□□ -1.11
LIG3-209ENST00000586435 EPM2AB3EWF7 344 aa8.11□□□□□ -1.11
LIG3-209ENST00000586435 EREGO14944 169 aa8.11□□□□□ -1.11
LIG3-209ENST00000586435 PAX4O43316 350 aa8.11□□□□□ -1.11
LIG3-209ENST00000586435 NXPH4O95158 308 aa8.11□□□□□ -1.11
LIG3-209ENST00000586435 ERVFC1-1P60608 527 aa8.11□□□□□ -1.11
LIG3-209ENST00000586435 HBG1P69891 147 aa8.11□□□□□ -1.11
LIG3-209ENST00000586435 HBG2P69892 147 aa8.11□□□□□ -1.11
LIG3-209ENST00000586435 SLAQ13239 276 aa8.11□□□□□ -1.11
LIG3-209ENST00000586435 STX12Q86Y82 276 aa8.11□□□□□ -1.11
LIG3-209ENST00000586435 ZFAND2AQ8N6M9 145 aa8.11□□□□□ -1.11
LIG3-209ENST00000586435 C2orf50Q96LR7 162 aa8.11□□□□□ -1.11
LIG3-209ENST00000586435 VGLL1Q99990 258 aa8.11□□□□□ -1.11
LIG3-209ENST00000586435 AAMDCQ9H7C9 122 aa8.11□□□□□ -1.11
LIG3-209ENST00000586435 PTTG2Q9NZH5 202 aa8.11□□□□□ -1.11
LIG3-209ENST00000586435 PRO0255Q9UI72 69 aa8.11□□□□□ -1.11
LIG3-209ENST00000586435 KLF12Q9Y4X4 402 aa8.11□□□□□ -1.11
LIG3-209ENST00000586435 TIMM9Q9Y5J7 89 aa8.11□□□□□ -1.11
LIG3-209ENST00000586435 TRBV7-9A0A0J9YWB2 115 aa8.1□□□□□ -1.11
LIG3-209ENST00000586435 FAM25EA8MYX2 175 aa8.1□□□□□ -1.11
LIG3-209ENST00000586435 GPX1P07203 203 aa8.1□□□□□ -1.11
LIG3-209ENST00000586435 PYYP10082 97 aa8.1□□□□□ -1.11
LIG3-209ENST00000586435 RNASE4P34096 147 aaKnown RBP8.1□□□□□ -1.11
LIG3-209ENST00000586435 IL15RAQ13261 267 aa8.1□□□□□ -1.11
LIG3-209ENST00000586435 ATP6V1FQ16864 119 aa8.1□□□□□ -1.11
LIG3-209ENST00000586435 NFE4Q86UQ8 179 aa8.1□□□□□ -1.11
LIG3-209ENST00000586435 TMEM252Q8N6L7 170 aa8.1□□□□□ -1.11
LIG3-209ENST00000586435 DMBT1Q9UGM3 2413 aaPredicted RBP8.1□□□□□ -1.11
LIG3-209ENST00000586435 IGHV1OR15-1A0A075B7D0 117 aa8.09□□□□□ -1.11
LIG3-209ENST00000586435 IGSF23A1L1A6 192 aa8.09□□□□□ -1.11
LIG3-209ENST00000586435 C5orf51A6NDU8 294 aa8.09□□□□□ -1.11
LIG3-209ENST00000586435 K7EP13 123 aa8.09□□□□□ -1.11
LIG3-209ENST00000586435 RGS13O14921 159 aa8.09□□□□□ -1.11
LIG3-209ENST00000586435 PLA2G10O15496 165 aa8.09□□□□□ -1.11
LIG3-209ENST00000586435 LYRM1O43325 122 aa8.09□□□□□ -1.11
LIG3-209ENST00000586435 TCRBP04435 133 aa8.09□□□□□ -1.11
LIG3-209ENST00000586435 FGF7P21781 194 aa8.09□□□□□ -1.11
LIG3-209ENST00000586435 CRYBA4P53673 196 aa8.09□□□□□ -1.11
LIG3-209ENST00000586435 MRPL23Q16540 153 aaKnown RBP8.09□□□□□ -1.11
LIG3-209ENST00000586435 TMEM78Q5T7P6 136 aa8.09□□□□□ -1.11
LIG3-209ENST00000586435 PRR9Q5T870 116 aa8.09□□□□□ -1.11
LIG3-209ENST00000586435 LYPD1Q8N2G4 141 aa8.09□□□□□ -1.11
LIG3-209ENST00000586435 EXOC3-AS1Q8N2X6 119 aa8.09□□□□□ -1.11
LIG3-209ENST00000586435 ZNF492Q9P255 531 aa8.09□□□□□ -1.11
LIG3-209ENST00000586435 IGKV2-40A0A087WW87 121 aaPredicted RBP8.08□□□□□ -1.12
LIG3-209ENST00000586435 IGKV2D-40P01614 121 aaPredicted RBP8.08□□□□□ -1.12
LIG3-209ENST00000586435 S100A10P60903 97 aa8.08□□□□□ -1.12
LIG3-209ENST00000586435 ZNF415Q09FC8 603 aa8.08□□□□□ -1.12
LIG3-209ENST00000586435 RAB32Q13637 225 aa8.08□□□□□ -1.12
LIG3-209ENST00000586435 FHL2Q14192 279 aa8.08□□□□□ -1.12
LIG3-209ENST00000586435 ICAM4Q14773 271 aa8.08□□□□□ -1.12
LIG3-209ENST00000586435 LYPD5Q6UWN5 251 aa8.08□□□□□ -1.12
LIG3-209ENST00000586435 NEGR1Q7Z3B1 354 aa8.08□□□□□ -1.12
LIG3-209ENST00000586435 BLNKQ8WV28 456 aa8.08□□□□□ -1.12
LIG3-209ENST00000586435 FAM167A-AS1Q96KT0 104 aa8.08□□□□□ -1.12
LIG3-209ENST00000586435 ARPC5LQ9BPX5 153 aa8.08□□□□□ -1.12
LIG3-209ENST00000586435 SEC22CQ9BRL7 303 aa8.08□□□□□ -1.12
LIG3-209ENST00000586435 SLC25A2Q9BXI2 301 aa8.08□□□□□ -1.12
LIG3-209ENST00000586435 NPCDR1Q9BY65 106 aa8.08□□□□□ -1.12
LIG3-209ENST00000586435 NUDT15Q9NV35 164 aa8.08□□□□□ -1.12
LIG3-209ENST00000586435 MRPL16Q9NX20 251 aaKnown RBP8.08□□□□□ -1.12
LIG3-209ENST00000586435 TP53TG3Q9ULZ0 132 aa8.08□□□□□ -1.12
LIG3-209ENST00000586435 HHLA3Q9XRX5 114 aa8.08□□□□□ -1.12
LIG3-209ENST00000586435 TRAV6A0A075B6T7 132 aa8.07□□□□□ -1.12
LIG3-209ENST00000586435 TRAV9-2A0A087WT02 112 aa8.07□□□□□ -1.12
LIG3-209ENST00000586435 A0A087WTM6 91 aa8.07□□□□□ -1.12
LIG3-209ENST00000586435 IGHV3-53P01767 116 aa8.07□□□□□ -1.12
LIG3-209ENST00000586435 XGP55808 180 aa8.07□□□□□ -1.12
LIG3-209ENST00000586435 IQCF2Q8IXL9 164 aa8.07□□□□□ -1.12
LIG3-209ENST00000586435 LY96Q9Y6Y9 160 aa8.07□□□□□ -1.12
LIG3-209ENST00000586435 RBAKDNA6NC62 111 aa8.06□□□□□ -1.12
LIG3-209ENST00000586435 NBEAP1P0C6P0 100 aa8.06□□□□□ -1.12
LIG3-209ENST00000586435 ZNF138P52744 262 aa8.06□□□□□ -1.12
LIG3-209ENST00000586435 GCSAMLQ5JQS6 135 aa8.06□□□□□ -1.12
LIG3-209ENST00000586435 FAM122CQ6P4D5 195 aa8.06□□□□□ -1.12
LIG3-209ENST00000586435 C8orf49Q96NF6 230 aa8.06□□□□□ -1.12
LIG3-209ENST00000586435 MRPL32Q9BYC8 188 aaKnown RBP8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms