RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760		J3KRW8	73 aa		9.41	□□□□□ -0.9
SREBF1-223	ENST00000584760	EIF3G	O75821	320 aa	Known RBP eCLIP	9.41	□□□□□ -0.9
SREBF1-223	ENST00000584760	HTN1	P15515	57 aa		9.41	□□□□□ -0.9
SREBF1-223	ENST00000584760	HTN3	P15516	51 aa		9.41	□□□□□ -0.9
SREBF1-223	ENST00000584760	AGPAT4-IT1	Q9H0P7	198 aa		9.41	□□□□□ -0.9
SREBF1-223	ENST00000584760	TRAV12-3	A0A0B4J271	114 aa		9.4	□□□□□ -0.9
SREBF1-223	ENST00000584760	SLC25A5	P05141	298 aa	Known RBP	9.4	□□□□□ -0.9
SREBF1-223	ENST00000584760	MED14OS	P0DP75	135 aa		9.4	□□□□□ -0.9
SREBF1-223	ENST00000584760	CRISP2	P16562	243 aa		9.4	□□□□□ -0.9
SREBF1-223	ENST00000584760	M6PR	P20645	277 aa		9.4	□□□□□ -0.9
SREBF1-223	ENST00000584760	TAS2R45	P59539	299 aa		9.4	□□□□□ -0.9
SREBF1-223	ENST00000584760	ZNF266	Q14584	549 aa		9.4	□□□□□ -0.9
SREBF1-223	ENST00000584760	ACOT6	Q3I5F7	207 aa	Predicted RBP	9.4	□□□□□ -0.9
SREBF1-223	ENST00000584760	LINC00477	Q96M19	166 aa		9.4	□□□□□ -0.9
SREBF1-223	ENST00000584760	VGLL1	Q99990	258 aa		9.4	□□□□□ -0.9
SREBF1-223	ENST00000584760	NACA	E9PAV3	2078 aa		9.4	□□□□□ -0.91
SREBF1-223	ENST00000584760	C7orf71	A4D174	169 aa		9.39	□□□□□ -0.91
SREBF1-223	ENST00000584760	RNF222	A6NCQ9	220 aa		9.39	□□□□□ -0.91
SREBF1-223	ENST00000584760		G3V3Q6	166 aa		9.39	□□□□□ -0.91
SREBF1-223	ENST00000584760	DEFB130B	P0DP73	79 aa		9.39	□□□□□ -0.91
SREBF1-223	ENST00000584760	DEFB130A	P0DP74	79 aa		9.39	□□□□□ -0.91
SREBF1-223	ENST00000584760	RAB2A	P61019	212 aa		9.39	□□□□□ -0.91
SREBF1-223	ENST00000584760	CD300C	Q08708	224 aa		9.39	□□□□□ -0.91
SREBF1-223	ENST00000584760	BTN1A1	Q13410	526 aa		9.39	□□□□□ -0.91
SREBF1-223	ENST00000584760	TMEM88	Q6PEY1	159 aa		9.39	□□□□□ -0.91
SREBF1-223	ENST00000584760	LINC00336	Q6ZUF6	198 aa		9.39	□□□□□ -0.91
SREBF1-223	ENST00000584760	LYPD1	Q8N2G4	141 aa		9.39	□□□□□ -0.91
SREBF1-223	ENST00000584760	ZFAND2A	Q8N6M9	145 aa		9.39	□□□□□ -0.91
SREBF1-223	ENST00000584760	OR2G3	Q8NGZ4	309 aa		9.39	□□□□□ -0.91
SREBF1-223	ENST00000584760	PYGO2	Q9BRQ0	406 aa		9.39	□□□□□ -0.91
SREBF1-223	ENST00000584760		Q9H3A6	140 aa		9.39	□□□□□ -0.91
SREBF1-223	ENST00000584760	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	9.39	□□□□□ -0.91
SREBF1-223	ENST00000584760	NMB	P08949	121 aa		9.38	□□□□□ -0.91
SREBF1-223	ENST00000584760		P0DMU3	169 aa		9.38	□□□□□ -0.91
SREBF1-223	ENST00000584760	FAM231A	P0DMU4	169 aa		9.38	□□□□□ -0.91
SREBF1-223	ENST00000584760	FAM231C	P0DMU5	169 aa		9.38	□□□□□ -0.91
SREBF1-223	ENST00000584760	RAN	P62826	216 aa	Known RBP	9.38	□□□□□ -0.91
SREBF1-223	ENST00000584760	TMEM78	Q5T7P6	136 aa		9.38	□□□□□ -0.91
SREBF1-223	ENST00000584760	PRR9	Q5T870	116 aa		9.38	□□□□□ -0.91
SREBF1-223	ENST00000584760	PQLC2	Q6ZP29	291 aa		9.38	□□□□□ -0.91
SREBF1-223	ENST00000584760	LINC00612	Q8N6U2	182 aa		9.38	□□□□□ -0.91
SREBF1-223	ENST00000584760	HSD17B11	Q8NBQ5	300 aa		9.38	□□□□□ -0.91
SREBF1-223	ENST00000584760		Q8TAT8	98 aa		9.38	□□□□□ -0.91
SREBF1-223	ENST00000584760	PSMG3	Q9BT73	122 aa	Predicted RBP	9.38	□□□□□ -0.91
SREBF1-223	ENST00000584760	ZNF492	Q9P255	531 aa		9.38	□□□□□ -0.91
SREBF1-223	ENST00000584760		A0A1B0GVY2	172 aa		9.37	□□□□□ -0.91
SREBF1-223	ENST00000584760	RBAKDN	A6NC62	111 aa		9.37	□□□□□ -0.91
SREBF1-223	ENST00000584760	ZNF324	O75467	553 aa	Predicted RBP	9.37	□□□□□ -0.91
SREBF1-223	ENST00000584760	ATP6V0C	P27449	155 aa		9.37	□□□□□ -0.91
SREBF1-223	ENST00000584760	OR10G4	Q8NGN3	311 aa		9.37	□□□□□ -0.91
SREBF1-223	ENST00000584760	OR10G9	Q8NGN4	311 aa		9.37	□□□□□ -0.91
SREBF1-223	ENST00000584760	OR10G7	Q8NGN6	311 aa		9.37	□□□□□ -0.91
SREBF1-223	ENST00000584760	OR2T35	Q8NGX2	323 aa		9.37	□□□□□ -0.91
SREBF1-223	ENST00000584760	NOP10	Q9NPE3	64 aa	Known RBP	9.37	□□□□□ -0.91
SREBF1-223	ENST00000584760	TNFSF18	Q9UNG2	199 aa		9.37	□□□□□ -0.91
SREBF1-223	ENST00000584760	FXYD6-FXYD2	A0A087WZ82	144 aa		9.36	□□□□□ -0.91
SREBF1-223	ENST00000584760	TRBV7-9	A0A0J9YWB2	115 aa		9.36	□□□□□ -0.91
SREBF1-223	ENST00000584760		A0A1W2PPV4	95 aa		9.36	□□□□□ -0.91
SREBF1-223	ENST00000584760	CBY3	A6NI87	242 aa		9.36	□□□□□ -0.91
SREBF1-223	ENST00000584760	HMGB3	O15347	200 aa	Known RBP	9.36	□□□□□ -0.91
SREBF1-223	ENST00000584760	RNASE4	P34096	147 aa	Known RBP	9.36	□□□□□ -0.91
SREBF1-223	ENST00000584760	CSN1S1	P47710	185 aa		9.36	□□□□□ -0.91
SREBF1-223	ENST00000584760	CDC34	P49427	236 aa	Predicted RBP	9.36	□□□□□ -0.91
SREBF1-223	ENST00000584760	ZNF138	P52744	262 aa		9.36	□□□□□ -0.91
SREBF1-223	ENST00000584760	CCDC28A	Q8IWP9	274 aa		9.36	□□□□□ -0.91
SREBF1-223	ENST00000584760	POM121L12	Q8N7R1	296 aa		9.36	□□□□□ -0.91
SREBF1-223	ENST00000584760	C11orf72	Q8NBR9	251 aa		9.36	□□□□□ -0.91
SREBF1-223	ENST00000584760	LINC00467	Q9BRT7	94 aa		9.36	□□□□□ -0.91
SREBF1-223	ENST00000584760	SH3BGRL3	Q9H299	93 aa		9.36	□□□□□ -0.91
SREBF1-223	ENST00000584760	OTOR	Q9NRC9	128 aa		9.36	□□□□□ -0.91
SREBF1-223	ENST00000584760	DIRC3	C9JPN6	131 aa		9.35	□□□□□ -0.91
SREBF1-223	ENST00000584760	ATP5G1	P05496	136 aa		9.35	□□□□□ -0.91
SREBF1-223	ENST00000584760	GPX1	P07203	203 aa		9.35	□□□□□ -0.91
SREBF1-223	ENST00000584760	STAG3L2	P0CL84	134 aa		9.35	□□□□□ -0.91
SREBF1-223	ENST00000584760	STAG3L3	P0CL85	134 aa		9.35	□□□□□ -0.91
SREBF1-223	ENST00000584760	ARL14EPL	P0DKL9	152 aa		9.35	□□□□□ -0.91
SREBF1-223	ENST00000584760	ATP5G3	P48201	142 aa		9.35	□□□□□ -0.91
SREBF1-223	ENST00000584760	INO80E	Q8NBZ0	244 aa	Predicted RBP	9.35	□□□□□ -0.91
SREBF1-223	ENST00000584760	PRSS29P	A6NIE9	313 aa		9.34	□□□□□ -0.91
SREBF1-223	ENST00000584760	SNURFL	B1AK76	121 aa		9.34	□□□□□ -0.91
SREBF1-223	ENST00000584760		F5H768	121 aa		9.34	□□□□□ -0.91
SREBF1-223	ENST00000584760	SERF2	P84101	59 aa		9.34	□□□□□ -0.91
SREBF1-223	ENST00000584760	DAZ2	Q13117	558 aa	Known RBP	9.34	□□□□□ -0.91
SREBF1-223	ENST00000584760	ANXA2R	Q3ZCQ2	193 aa		9.34	□□□□□ -0.91
SREBF1-223	ENST00000584760	RPL7L1	Q6DKI1	246 aa	Known RBP	9.34	□□□□□ -0.91
SREBF1-223	ENST00000584760		Q6ZQT7	251 aa		9.34	□□□□□ -0.91
SREBF1-223	ENST00000584760	EIF4E3	Q8N5X7	224 aa	Known RBP	9.34	□□□□□ -0.91
SREBF1-223	ENST00000584760	C15orf53	Q8NAA6	179 aa		9.34	□□□□□ -0.91
SREBF1-223	ENST00000584760	ZNF680	Q8NEM1	530 aa		9.34	□□□□□ -0.91
SREBF1-223	ENST00000584760	RXFP4	Q8TDU9	374 aa		9.34	□□□□□ -0.91
SREBF1-223	ENST00000584760	RAB24	Q969Q5	203 aa		9.34	□□□□□ -0.91
SREBF1-223	ENST00000584760	DNAH2	Q9P225	4427 aa		9.34	□□□□□ -0.91
SREBF1-223	ENST00000584760	SUN5	Q8TC36	379 aa		9.33	□□□□□ -0.92
SREBF1-223	ENST00000584760	TMED6	Q8WW62	240 aa		9.33	□□□□□ -0.92
SREBF1-223	ENST00000584760	HYLS1	Q96M11	299 aa		9.33	□□□□□ -0.92
SREBF1-223	ENST00000584760	KRTAP4-5	Q9BYR2	181 aa		9.33	□□□□□ -0.92
SREBF1-223	ENST00000584760	GSN-AS1	Q9NRJ2	163 aa		9.33	□□□□□ -0.92
SREBF1-223	ENST00000584760	LENEP	Q9Y5L5	61 aa		9.33	□□□□□ -0.92
SREBF1-223	ENST00000584760	MUC4	Q99102	2169 aa		9.32	□□□□□ -0.92
SREBF1-223	ENST00000584760	BORCS7-ASMT	A0A0B4J1R7	106 aa		9.32	□□□□□ -0.92

Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms