RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	TMEM222	Q9H0R3	208 aa		3.39	□□□□□ -1.87
SS18-223	ENST00000583595	FAM60A	Q9NP50	221 aa		3.39	□□□□□ -1.87
SS18-223	ENST00000583595	ZNF331	Q9NQX6	463 aa	Predicted RBP	3.39	□□□□□ -1.87
SS18-223	ENST00000583595	OSTC	Q9NRP0	149 aa		3.39	□□□□□ -1.87
SS18-223	ENST00000583595	TNFRSF19	Q9NS68	423 aa		3.39	□□□□□ -1.87
SS18-223	ENST00000583595	NUP210	Q8TEM1	1887 aa	Predicted RBP	3.39	□□□□□ -1.87
SS18-223	ENST00000583595	TEX50	A0A1B0GTY4	177 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595	NDUFC2-KCTD14	E9PQ53	114 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595		F5H768	121 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595		J3KT08	172 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595	PSPHP1	O15172	72 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595	LEPROTL1	O95214	131 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595	NAPSA	O96009	420 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595	SLC25A5	P05141	298 aa	Known RBP	3.38	□□□□□ -1.87
SS18-223	ENST00000583595	IFI6	P09912	130 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595	FGF6	P10767	208 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595	HMGA1	P17096	107 aa	Known RBP	3.38	□□□□□ -1.87
SS18-223	ENST00000583595	CXCL12	P48061	93 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595	TAS2R45	P59539	299 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595	RPS28	P62857	69 aa	Known RBP	3.38	□□□□□ -1.87
SS18-223	ENST00000583595	ETDB	Q3ZM63	59 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595	NMS	Q5H8A3	153 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595	MEIG1	Q5JSS6	88 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595	SH2D6	Q7Z4S9	175 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595	CAMK2N1	Q7Z7J9	78 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595	RPP25L	Q8N5L8	163 aa	Known RBP	3.38	□□□□□ -1.87
SS18-223	ENST00000583595	PPDPFL	Q8WWR9	84 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595	PRELID3A	Q96N28	172 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595	HSD17B10	Q99714	261 aa	Known RBP	3.38	□□□□□ -1.87
SS18-223	ENST00000583595	NAA38	Q9BRA0	125 aa	Known RBP	3.38	□□□□□ -1.87
SS18-223	ENST00000583595	CHAC1	Q9BUX1	264 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595	IFI27L2	Q9H2X8	130 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595	ENY2	Q9NPA8	101 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595	PSENEN	Q9NZ42	101 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595	HIGD1B	Q9P298	99 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595	PRO0461	Q9UI25	63 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595	YTHDF2	Q9Y5A9	579 aa	Known RBP	3.38	□□□□□ -1.87
SS18-223	ENST00000583595	HILPDA	Q9Y5L2	63 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595		V9GYV3	84 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595	PLXNA2	O75051	1894 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595	NLRC5	Q86WI3	1866 aa		3.38	□□□□□ -1.87
SS18-223	ENST00000583595	MYO16	Q9Y6X6	1858 aa		3.37	□□□□□ -1.87
SS18-223	ENST00000583595	SZT2	Q5T011	3432 aa		3.37	□□□□□ -1.87
SS18-223	ENST00000583595	SMIM27	A0A1W2PRY6	76 aa		3.37	□□□□□ -1.87
SS18-223	ENST00000583595	IGKV1D-33	P01593	117 aa		3.37	□□□□□ -1.87
SS18-223	ENST00000583595	IGKV1-33	P01594	117 aa		3.37	□□□□□ -1.87
SS18-223	ENST00000583595	IGHV4-34	P06331	123 aa		3.37	□□□□□ -1.87
SS18-223	ENST00000583595	OPRK1	P41145	380 aa		3.37	□□□□□ -1.87
SS18-223	ENST00000583595	ASIP	P42127	132 aa		3.37	□□□□□ -1.87
SS18-223	ENST00000583595	SPINT3	P49223	89 aa		3.37	□□□□□ -1.87
SS18-223	ENST00000583595	GFER	P55789	205 aa		3.37	□□□□□ -1.87
SS18-223	ENST00000583595	DLX6	P56179	175 aa		3.37	□□□□□ -1.87
SS18-223	ENST00000583595	DIAPH2-AS1	Q14236	149 aa		3.37	□□□□□ -1.87
SS18-223	ENST00000583595	LPAL2	Q16609	132 aa		3.37	□□□□□ -1.87
SS18-223	ENST00000583595	OSR2	Q8N2R0	312 aa		3.37	□□□□□ -1.87
SS18-223	ENST00000583595	FMC1	Q96HJ9	113 aa		3.37	□□□□□ -1.87
SS18-223	ENST00000583595	TMEM147	Q9BVK8	224 aa		3.37	□□□□□ -1.87
SS18-223	ENST00000583595	PRTFDC1	Q9NRG1	225 aa		3.37	□□□□□ -1.87
SS18-223	ENST00000583595	TP73-AS1	Q9UF72	201 aa		3.37	□□□□□ -1.87
SS18-223	ENST00000583595	LAMA3	Q16787	3333 aa		3.37	□□□□□ -1.87
SS18-223	ENST00000583595	PTPRD	P23468	1912 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	TNRC6A	Q8NDV7	1962 aa	Known RBP	3.36	□□□□□ -1.87
SS18-223	ENST00000583595	TRAV5	A0A0B4J249	113 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	IGLL5	B9A064	214 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	INS-IGF2	F8WCM5	200 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	SNCG	O76070	127 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	ZNF688	P0C7X2	276 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	CPM	P14384	443 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	GLRX	P35754	106 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	MPV17	P39210	176 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	ATP5G3	P48201	142 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	FXYD4	P59646	89 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	RPS24	P62847	133 aa	Known RBP	3.36	□□□□□ -1.87
SS18-223	ENST00000583595	SLC38A11	Q08AI6	406 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	ERCC8	Q13216	396 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	IBA57	Q5T440	356 aa	Known RBP	3.36	□□□□□ -1.87
SS18-223	ENST00000583595	TSPO2	Q5TGU0	170 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	ATP5L2	Q7Z4Y8	100 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	GTSCR1	Q86UQ5	136 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	MDP1	Q86V88	176 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	OR5AS1	Q8N127	324 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	LRRC25	Q8N386	305 aa	Predicted RBP	3.36	□□□□□ -1.87
SS18-223	ENST00000583595	DRAM1	Q8N682	238 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	OR51H1	Q8NH63	302 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	ZNRF2	Q8NHG8	242 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	LINC01006	Q8NI28	216 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	FAM104A	Q969W3	186 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	SPACA5	Q96QH8	159 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	EMC6	Q9BV81	110 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	INSIG2	Q9Y5U4	225 aa		3.36	□□□□□ -1.87
SS18-223	ENST00000583595	TRBV20OR9-2	A0A075B6H5	130 aa		3.35	□□□□□ -1.87
SS18-223	ENST00000583595	IGHV1-24	A0A0C4DH33	117 aa		3.35	□□□□□ -1.87
SS18-223	ENST00000583595	UBE2L5P	A0A1B0GUS4	154 aa		3.35	□□□□□ -1.87
SS18-223	ENST00000583595	C17orf51	A8MQB3	221 aa		3.35	□□□□□ -1.87
SS18-223	ENST00000583595	GGTLC3	B5MD39	225 aa		3.35	□□□□□ -1.87
SS18-223	ENST00000583595		C9JAW5	83 aa		3.35	□□□□□ -1.87
SS18-223	ENST00000583595		K7EQS6	105 aa		3.35	□□□□□ -1.87
SS18-223	ENST00000583595	SYNGR2	O43760	224 aa		3.35	□□□□□ -1.87
SS18-223	ENST00000583595	PPY	P01298	95 aa		3.35	□□□□□ -1.87
SS18-223	ENST00000583595	ASAH2B	P0C7U1	165 aa		3.35	□□□□□ -1.87

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