RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 NACAE9PAV3 2078 aa9.55□□□□□ -0.88
CCDC40-216ENST00000576241 A0A0J9YY99 117 aa9.54□□□□□ -0.88
CCDC40-216ENST00000576241 PYYP10082 97 aa9.54□□□□□ -0.88
CCDC40-216ENST00000576241 DAZ2Q13117 558 aaKnown RBP9.54□□□□□ -0.88
CCDC40-216ENST00000576241 ERCC8Q13216 396 aa9.54□□□□□ -0.88
CCDC40-216ENST00000576241 ZNF680Q8NEM1 530 aa9.54□□□□□ -0.88
CCDC40-216ENST00000576241 THAP6Q8TBB0 222 aa9.54□□□□□ -0.88
CCDC40-216ENST00000576241 ENKURQ8TC29 256 aa9.54□□□□□ -0.88
CCDC40-216ENST00000576241 BLNKQ8WV28 456 aa9.54□□□□□ -0.88
CCDC40-216ENST00000576241 LINC00477Q96M19 166 aa9.54□□□□□ -0.88
CCDC40-216ENST00000576241 SLC25A31Q9H0C2 315 aa9.54□□□□□ -0.88
CCDC40-216ENST00000576241 KCNIP2Q9NS61 270 aa9.54□□□□□ -0.88
CCDC40-216ENST00000576241 APOBP04114 4563 aaKnown RBP9.53□□□□□ -0.88
CCDC40-216ENST00000576241 TRGV2A0A075B6R0 118 aa9.53□□□□□ -0.88
CCDC40-216ENST00000576241 H3BNG1 76 aa9.53□□□□□ -0.88
CCDC40-216ENST00000576241 NDUFB4O95168 129 aa9.53□□□□□ -0.88
CCDC40-216ENST00000576241 TNP2Q05952 138 aa9.53□□□□□ -0.88
CCDC40-216ENST00000576241 TTC32Q5I0X7 151 aa9.53□□□□□ -0.88
CCDC40-216ENST00000576241 GCSAMLQ5JQS6 135 aa9.53□□□□□ -0.88
CCDC40-216ENST00000576241 OR5C1Q8NGR4 320 aa9.53□□□□□ -0.88
CCDC40-216ENST00000576241 TMPRSS5Q9H3S3 457 aa9.53□□□□□ -0.88
CCDC40-216ENST00000576241 SCRT2Q9NQ03 307 aa9.53□□□□□ -0.88
CCDC40-216ENST00000576241 KLLNB2CW77 178 aa9.52□□□□□ -0.89
CCDC40-216ENST00000576241 E5RGE8 158 aa9.52□□□□□ -0.89
CCDC40-216ENST00000576241 HOXA5P20719 270 aa9.52□□□□□ -0.89
CCDC40-216ENST00000576241 RNASE4P34096 147 aaKnown RBP9.52□□□□□ -0.89
CCDC40-216ENST00000576241 NHLH2Q02577 135 aa9.52□□□□□ -0.89
CCDC40-216ENST00000576241 BTN1A1Q13410 526 aa9.52□□□□□ -0.89
CCDC40-216ENST00000576241 LRRC37A5PQ49AS3 106 aa9.52□□□□□ -0.89
CCDC40-216ENST00000576241 TMEM78Q5T7P6 136 aa9.52□□□□□ -0.89
CCDC40-216ENST00000576241 Q6ZTI0 123 aa9.52□□□□□ -0.89
CCDC40-216ENST00000576241 EXOC3-AS1Q8N2X6 119 aa9.52□□□□□ -0.89
CCDC40-216ENST00000576241 SLC25A2Q9BXI2 301 aa9.52□□□□□ -0.89
CCDC40-216ENST00000576241 Q9H8V8 135 aa9.52□□□□□ -0.89
CCDC40-216ENST00000576241 SIX6O95475 246 aa9.51□□□□□ -0.89
CCDC40-216ENST00000576241 GPX1P07203 203 aa9.51□□□□□ -0.89
CCDC40-216ENST00000576241 CYCSP99999 105 aaKnown RBP9.51□□□□□ -0.89
CCDC40-216ENST00000576241 ICAM4Q14773 271 aa9.51□□□□□ -0.89
CCDC40-216ENST00000576241 FAM122CQ6P4D5 195 aa9.51□□□□□ -0.89
CCDC40-216ENST00000576241 MIR17HGQ75NE6 70 aa9.51□□□□□ -0.89
CCDC40-216ENST00000576241 EIF4E3Q8N5X7 224 aaKnown RBP9.51□□□□□ -0.89
CCDC40-216ENST00000576241 FAM19A4Q96LR4 140 aa9.51□□□□□ -0.89
CCDC40-216ENST00000576241 LINC00467Q9BRT7 94 aa9.51□□□□□ -0.89
CCDC40-216ENST00000576241 NMES1Q9C002 83 aa9.51□□□□□ -0.89
CCDC40-216ENST00000576241 AGPAT4-IT1Q9H0P7 198 aa9.51□□□□□ -0.89
CCDC40-216ENST00000576241 GSN-AS1Q9NRJ2 163 aa9.51□□□□□ -0.89
CCDC40-216ENST00000576241 LRP1BQ9NZR2 4599 aa9.5□□□□□ -0.89
CCDC40-216ENST00000576241 IGKV2-40A0A087WW87 121 aaPredicted RBP9.5□□□□□ -0.89
CCDC40-216ENST00000576241 TRGV1A0A0A0MS02 117 aa9.5□□□□□ -0.89
CCDC40-216ENST00000576241 C16orf90A8MZG2 172 aa9.5□□□□□ -0.89
CCDC40-216ENST00000576241 C17orf112F2Z3M2 114 aa9.5□□□□□ -0.89
CCDC40-216ENST00000576241 PRAF2O60831 178 aa9.5□□□□□ -0.89
CCDC40-216ENST00000576241 ZNF324O75467 553 aaPredicted RBP9.5□□□□□ -0.89
CCDC40-216ENST00000576241 IGKV2D-40P01614 121 aaPredicted RBP9.5□□□□□ -0.89
CCDC40-216ENST00000576241 NMBP08949 121 aa9.5□□□□□ -0.89
CCDC40-216ENST00000576241 NBEAP1P0C6P0 100 aa9.5□□□□□ -0.89
CCDC40-216ENST00000576241 CRISP2P16562 243 aa9.5□□□□□ -0.89
CCDC40-216ENST00000576241 CD300CQ08708 224 aa9.5□□□□□ -0.89
CCDC40-216ENST00000576241 ANXA2RQ3ZCQ2 193 aa9.5□□□□□ -0.89
CCDC40-216ENST00000576241 C9orf47Q6ZRZ4 202 aa9.5□□□□□ -0.89
CCDC40-216ENST00000576241 MRPL32Q9BYC8 188 aaKnown RBP9.5□□□□□ -0.89
CCDC40-216ENST00000576241 OR51M1Q9H341 326 aa9.5□□□□□ -0.89
CCDC40-216ENST00000576241 OR5AC2Q9NZP5 309 aa9.5□□□□□ -0.89
CCDC40-216ENST00000576241 FUT9Q9Y231 359 aa9.5□□□□□ -0.89
CCDC40-216ENST00000576241 RGS13O14921 159 aa9.49□□□□□ -0.89
CCDC40-216ENST00000576241 UPK1BO75841 260 aa9.49□□□□□ -0.89
CCDC40-216ENST00000576241 C11orf72Q8NBR9 251 aa9.49□□□□□ -0.89
CCDC40-216ENST00000576241 FAM167A-AS1Q96KT0 104 aa9.49□□□□□ -0.89
CCDC40-216ENST00000576241 C18orf15Q96N68 181 aa9.49□□□□□ -0.89
CCDC40-216ENST00000576241 UPK3BQ9BT76 320 aa9.49□□□□□ -0.89
CCDC40-216ENST00000576241 PAXXQ9BUH6 204 aa9.49□□□□□ -0.89
CCDC40-216ENST00000576241 WDR61Q9GZS3 305 aaKnown RBP9.49□□□□□ -0.89
CCDC40-216ENST00000576241 Q9H3A6 140 aa9.49□□□□□ -0.89
CCDC40-216ENST00000576241 MRPS16Q9Y3D3 137 aaKnown RBP9.49□□□□□ -0.89
CCDC40-216ENST00000576241 OR7C2O60412 319 aa9.48□□□□□ -0.89
CCDC40-216ENST00000576241 OR10J4P0C629 311 aa9.48□□□□□ -0.89
CCDC40-216ENST00000576241 CSN1S1P47710 185 aa9.48□□□□□ -0.89
CCDC40-216ENST00000576241 TCL1AP56279 114 aa9.48□□□□□ -0.89
CCDC40-216ENST00000576241 ESRGQ1W209 222 aa9.48□□□□□ -0.89
CCDC40-216ENST00000576241 IBA57Q5T440 356 aaKnown RBP9.48□□□□□ -0.89
CCDC40-216ENST00000576241 VGLL1Q99990 258 aa9.48□□□□□ -0.89
CCDC40-216ENST00000576241 ARPC5LQ9BPX5 153 aa9.48□□□□□ -0.89
CCDC40-216ENST00000576241 INMT-MINDY4F8WBC2 141 aa9.47□□□□□ -0.89
CCDC40-216ENST00000576241 H0YIZ8 118 aa9.47□□□□□ -0.89
CCDC40-216ENST00000576241 PET100P0DJ07 73 aa9.47□□□□□ -0.89
CCDC40-216ENST00000576241 ZNF138P52744 262 aa9.47□□□□□ -0.89
CCDC40-216ENST00000576241 ZFAND2AQ8N6M9 145 aa9.47□□□□□ -0.89
CCDC40-216ENST00000576241 FXYD5Q96DB9 178 aa9.47□□□□□ -0.89
CCDC40-216ENST00000576241 PHYHIPLQ96FC7 376 aa9.47□□□□□ -0.89
CCDC40-216ENST00000576241 ATP5SQ99766 215 aa9.47□□□□□ -0.89
CCDC40-216ENST00000576241 ZNF492Q9P255 531 aa9.47□□□□□ -0.89
CCDC40-216ENST00000576241 KLF12Q9Y4X4 402 aa9.47□□□□□ -0.89
CCDC40-216ENST00000576241 IGHV1OR15-1A0A075B7D0 117 aa9.46□□□□□ -0.9
CCDC40-216ENST00000576241 A0A096LPF7 62 aa9.46□□□□□ -0.9
CCDC40-216ENST00000576241 TRBV7-9A0A0J9YWB2 115 aa9.46□□□□□ -0.9
CCDC40-216ENST00000576241 A0A1W2PPQ1 181 aa9.46□□□□□ -0.9
CCDC40-216ENST00000576241 SPINK4O60575 86 aa9.46□□□□□ -0.9
CCDC40-216ENST00000576241 UBE2L3P68036 154 aaKnown RBP9.46□□□□□ -0.9
CCDC40-216ENST00000576241 Q8TAT8 98 aa9.46□□□□□ -0.9
CCDC40-216ENST00000576241 PPP1R1CQ8WVI7 109 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms