RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 CT45A10P0DMU9 189 aa9.74□□□□□ -0.85
CIITA-210ENST00000575513 LEPP41159 167 aa9.74□□□□□ -0.85
CIITA-210ENST00000575513 TAS2R60P59551 318 aa9.74□□□□□ -0.85
CIITA-210ENST00000575513 ICAM4Q14773 271 aa9.74□□□□□ -0.85
CIITA-210ENST00000575513 ZNF726P1Q15940 193 aa9.74□□□□□ -0.85
CIITA-210ENST00000575513 C9orf47Q6ZRZ4 202 aa9.74□□□□□ -0.85
CIITA-210ENST00000575513 EXOC3-AS1Q8N2X6 119 aa9.74□□□□□ -0.85
CIITA-210ENST00000575513 C9orf62Q8N4C0 152 aa9.74□□□□□ -0.85
CIITA-210ENST00000575513 PHYHIPLQ96FC7 376 aa9.74□□□□□ -0.85
CIITA-210ENST00000575513 RYR3Q15413 4870 aa9.73□□□□□ -0.85
CIITA-210ENST00000575513 TRAV12-2A0A075B6T6 113 aa9.73□□□□□ -0.85
CIITA-210ENST00000575513 LOC102723971A0A1B0GUV8 181 aa9.73□□□□□ -0.85
CIITA-210ENST00000575513 H7BYZ3 331 aa9.73□□□□□ -0.85
CIITA-210ENST00000575513 CXorf1O96002 111 aa9.73□□□□□ -0.85
CIITA-210ENST00000575513 NMBP08949 121 aa9.73□□□□□ -0.85
CIITA-210ENST00000575513 ARL14EPLP0DKL9 152 aa9.73□□□□□ -0.85
CIITA-210ENST00000575513 GCHFRP30047 84 aa9.73□□□□□ -0.85
CIITA-210ENST00000575513 C12orf74Q32Q52 190 aa9.73□□□□□ -0.85
CIITA-210ENST00000575513 SLC51BQ86UW2 128 aa9.73□□□□□ -0.85
CIITA-210ENST00000575513 ARL6IP6Q8N6S5 226 aa9.73□□□□□ -0.85
CIITA-210ENST00000575513 C2CD4CQ8TF44 421 aa9.73□□□□□ -0.85
CIITA-210ENST00000575513 LINC01587Q99440 93 aa9.73□□□□□ -0.85
CIITA-210ENST00000575513 PLA2G2EQ9NZK7 142 aa9.73□□□□□ -0.85
CIITA-210ENST00000575513 DKK2Q9UBU2 259 aa9.73□□□□□ -0.85
CIITA-210ENST00000575513 TRAV10A0A0B4J240 114 aa9.72□□□□□ -0.85
CIITA-210ENST00000575513 TRBV7-9A0A0J9YWB2 115 aa9.72□□□□□ -0.85
CIITA-210ENST00000575513 RBAKDNA6NC62 111 aa9.72□□□□□ -0.85
CIITA-210ENST00000575513 HMGB3O15347 200 aaKnown RBP9.72□□□□□ -0.85
CIITA-210ENST00000575513 SLC25A5P05141 298 aaKnown RBP9.72□□□□□ -0.85
CIITA-210ENST00000575513 CSN1S1P47710 185 aa9.72□□□□□ -0.85
CIITA-210ENST00000575513 RANP62826 216 aaKnown RBP9.72□□□□□ -0.85
CIITA-210ENST00000575513 EIF5AL1Q6IS14 154 aaKnown RBP9.72□□□□□ -0.85
CIITA-210ENST00000575513 DPPA3Q6W0C5 159 aa9.72□□□□□ -0.85
CIITA-210ENST00000575513 ZNF493Q6ZR52 646 aa9.72□□□□□ -0.85
CIITA-210ENST00000575513 SSX7Q7RTT5 188 aa9.72□□□□□ -0.85
CIITA-210ENST00000575513 RXFP4Q8TDU9 374 aa9.72□□□□□ -0.85
CIITA-210ENST00000575513 FAM19A4Q96LR4 140 aa9.72□□□□□ -0.85
CIITA-210ENST00000575513 AGPAT4-IT1Q9H0P7 198 aa9.72□□□□□ -0.85
CIITA-210ENST00000575513 Q9H3A6 140 aa9.72□□□□□ -0.85
CIITA-210ENST00000575513 OTORQ9NRC9 128 aa9.72□□□□□ -0.85
CIITA-210ENST00000575513 TMEM167BQ9NRX6 74 aa9.72□□□□□ -0.85
CIITA-210ENST00000575513 CELA1Q9UNI1 258 aa9.72□□□□□ -0.85
CIITA-210ENST00000575513 DNAH1Q9P2D7 4330 aa9.72□□□□□ -0.85
CIITA-210ENST00000575513 EMP1P54849 157 aa9.71□□□□□ -0.86
CIITA-210ENST00000575513 Q6ZTC4 211 aa9.71□□□□□ -0.86
CIITA-210ENST00000575513 TMED6Q8WW62 240 aa9.71□□□□□ -0.86
CIITA-210ENST00000575513 YTHDF2Q9Y5A9 579 aaKnown RBP9.71□□□□□ -0.86
CIITA-210ENST00000575513 LYRM9A8MSI8 78 aa9.7□□□□□ -0.86
CIITA-210ENST00000575513 ZNF705GA8MUZ8 300 aaPredicted RBP9.7□□□□□ -0.86
CIITA-210ENST00000575513 KLLNB2CW77 178 aa9.7□□□□□ -0.86
CIITA-210ENST00000575513 PRB4P10163 310 aaPredicted RBP9.7□□□□□ -0.86
CIITA-210ENST00000575513 CRISP2P16562 243 aa9.7□□□□□ -0.86
CIITA-210ENST00000575513 RAB5CP51148 216 aa9.7□□□□□ -0.86
CIITA-210ENST00000575513 FAM74A1Q5RGS3 127 aa9.7□□□□□ -0.86
CIITA-210ENST00000575513 TMEM78Q5T7P6 136 aa9.7□□□□□ -0.86
CIITA-210ENST00000575513 FAM222AQ5U5X8 452 aa9.7□□□□□ -0.86
CIITA-210ENST00000575513 GFI1BQ5VTD9 330 aa9.7□□□□□ -0.86
CIITA-210ENST00000575513 MBD3L1Q8WWY6 194 aa9.7□□□□□ -0.86
CIITA-210ENST00000575513 NIPSNAP3BQ9BS92 247 aa9.7□□□□□ -0.86
CIITA-210ENST00000575513 MAP1LC3B2A6NCE7 125 aa9.69□□□□□ -0.86
CIITA-210ENST00000575513 ERCC8Q13216 396 aa9.69□□□□□ -0.86
CIITA-210ENST00000575513 KIR3DS1Q14943 382 aa9.69□□□□□ -0.86
CIITA-210ENST00000575513 ALMS1Q8TCU4 4167 aa9.69□□□□□ -0.86
CIITA-210ENST00000575513 C16orf74Q96GX8 76 aa9.69□□□□□ -0.86
CIITA-210ENST00000575513 MAP1LC3BQ9GZQ8 125 aa9.69□□□□□ -0.86
CIITA-210ENST00000575513 ZNF492Q9P255 531 aa9.69□□□□□ -0.86
CIITA-210ENST00000575513 LENEPQ9Y5L5 61 aa9.69□□□□□ -0.86
CIITA-210ENST00000575513 RYR2Q92736 4967 aa9.68□□□□□ -0.86
CIITA-210ENST00000575513 IGKV2-40A0A087WW87 121 aaPredicted RBP9.68□□□□□ -0.86
CIITA-210ENST00000575513 DEFB131BA0A096LNP1 70 aa9.68□□□□□ -0.86
CIITA-210ENST00000575513 A0A1W2PRE2 83 aa9.68□□□□□ -0.86
CIITA-210ENST00000575513 PLAC8L1A1L4L8 177 aa9.68□□□□□ -0.86
CIITA-210ENST00000575513 PGPA6NDG6 321 aa9.68□□□□□ -0.86
CIITA-210ENST00000575513 DIRC3C9JPN6 131 aa9.68□□□□□ -0.86
CIITA-210ENST00000575513 IGKV2D-40P01614 121 aaPredicted RBP9.68□□□□□ -0.86
CIITA-210ENST00000575513 AZU1P20160 251 aa9.68□□□□□ -0.86
CIITA-210ENST00000575513 FHITP49789 147 aa9.68□□□□□ -0.86
CIITA-210ENST00000575513 ZNF138P52744 262 aa9.68□□□□□ -0.86
CIITA-210ENST00000575513 CCDC28AQ8IWP9 274 aa9.68□□□□□ -0.86
CIITA-210ENST00000575513 FAM213BQ8TBF2 198 aa9.68□□□□□ -0.86
CIITA-210ENST00000575513 TMEM263Q8WUH6 116 aaKnown RBP9.68□□□□□ -0.86
CIITA-210ENST00000575513 LINC00476Q8WZB0 136 aa9.68□□□□□ -0.86
CIITA-210ENST00000575513 FAM210BQ96KR6 192 aa9.68□□□□□ -0.86
CIITA-210ENST00000575513 VGLL1Q99990 258 aa9.68□□□□□ -0.86
CIITA-210ENST00000575513 PYGO2Q9BRQ0 406 aa9.68□□□□□ -0.86
CIITA-210ENST00000575513 LINC00467Q9BRT7 94 aa9.68□□□□□ -0.86
CIITA-210ENST00000575513 TRAV12-3A0A0B4J271 114 aa9.67□□□□□ -0.86
CIITA-210ENST00000575513 C7orf71A4D174 169 aa9.67□□□□□ -0.86
CIITA-210ENST00000575513 IGLL5B9A064 214 aa9.67□□□□□ -0.86
CIITA-210ENST00000575513 ZNF324O75467 553 aaPredicted RBP9.67□□□□□ -0.86
CIITA-210ENST00000575513 PRM2P04554 102 aa9.67□□□□□ -0.86
CIITA-210ENST00000575513 GPX1P07203 203 aa9.67□□□□□ -0.86
CIITA-210ENST00000575513 SULT1A2P50226 295 aa9.67□□□□□ -0.86
CIITA-210ENST00000575513 NKX2-5P52952 324 aaPredicted RBP9.67□□□□□ -0.86
CIITA-210ENST00000575513 LGALS9CQ6DKI2 356 aa9.67□□□□□ -0.86
CIITA-210ENST00000575513 C5orf17Q8NAS9 161 aa9.67□□□□□ -0.86
CIITA-210ENST00000575513 CMTM2Q8TAZ6 248 aa9.67□□□□□ -0.86
CIITA-210ENST00000575513 RNASE8Q8TDE3 154 aaKnown RBP9.67□□□□□ -0.86
CIITA-210ENST00000575513 TIMM8BQ9Y5J9 83 aaPredicted RBP9.67□□□□□ -0.86
CIITA-210ENST00000575513 TRAV1-1A0A0B4J248 108 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms