RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 HBG2P69892 147 aa12.55□□□□□ -0.4
CHD3-214ENST00000572579 DAZ2Q13117 558 aaKnown RBP12.55□□□□□ -0.4
CHD3-214ENST00000572579 ESRGQ1W209 222 aa12.55□□□□□ -0.4
CHD3-214ENST00000572579 PRR9Q5T870 116 aa12.55□□□□□ -0.4
CHD3-214ENST00000572579 LINC00299Q6ZSB3 139 aa12.55□□□□□ -0.4
CHD3-214ENST00000572579 BLNKQ8WV28 456 aa12.55□□□□□ -0.4
CHD3-214ENST00000572579 VGLL1Q99990 258 aa12.55□□□□□ -0.4
CHD3-214ENST00000572579 TMPRSS5Q9H3S3 457 aa12.55□□□□□ -0.4
CHD3-214ENST00000572579 GSN-AS1Q9NRJ2 163 aa12.55□□□□□ -0.4
CHD3-214ENST00000572579 M6PRP20645 277 aa12.54□□□□□ -0.4
CHD3-214ENST00000572579 CCL18P55774 89 aa12.54□□□□□ -0.4
CHD3-214ENST00000572579 BTN1A1Q13410 526 aa12.54□□□□□ -0.4
CHD3-214ENST00000572579 SOHLH1Q5JUK2 328 aa12.54□□□□□ -0.4
CHD3-214ENST00000572579 MZT2BQ6NZ67 158 aa12.54□□□□□ -0.4
CHD3-214ENST00000572579 CCDC28AQ8IWP9 274 aa12.54□□□□□ -0.4
CHD3-214ENST00000572579 OR5C1Q8NGR4 320 aa12.54□□□□□ -0.4
CHD3-214ENST00000572579 RXFP4Q8TDU9 374 aa12.54□□□□□ -0.4
CHD3-214ENST00000572579 VSIG2Q96IQ7 327 aa12.54□□□□□ -0.4
CHD3-214ENST00000572579 PYGO2Q9BRQ0 406 aa12.54□□□□□ -0.4
CHD3-214ENST00000572579 IGKV2-40A0A087WW87 121 aaPredicted RBP12.53□□□□□ -0.4
CHD3-214ENST00000572579 C7orf71A4D174 169 aa12.53□□□□□ -0.4
CHD3-214ENST00000572579 IGKV2D-40P01614 121 aaPredicted RBP12.53□□□□□ -0.4
CHD3-214ENST00000572579 RLN2P04090 185 aa12.53□□□□□ -0.4
CHD3-214ENST00000572579 SLC25A5P05141 298 aaKnown RBP12.53□□□□□ -0.4
CHD3-214ENST00000572579 C6orf223Q8N319 242 aa12.53□□□□□ -0.4
CHD3-214ENST00000572579 ZFAND2AQ8N6M9 145 aa12.53□□□□□ -0.4
CHD3-214ENST00000572579 GNPNAT1Q96EK6 184 aaPredicted RBP12.53□□□□□ -0.4
CHD3-214ENST00000572579 Q9H8V8 135 aa12.53□□□□□ -0.4
CHD3-214ENST00000572579 TP53TG3Q9ULZ0 132 aa12.53□□□□□ -0.4
CHD3-214ENST00000572579 MUC4Q99102 2169 aa12.53□□□□□ -0.4
CHD3-214ENST00000572579 MPDU1O75352 247 aa12.52□□□□□ -0.41
CHD3-214ENST00000572579 UPK1BO75841 260 aa12.52□□□□□ -0.41
CHD3-214ENST00000572579 RNASE4P34096 147 aaKnown RBP12.52□□□□□ -0.41
CHD3-214ENST00000572579 H2BFSP57053 126 aa12.52□□□□□ -0.41
CHD3-214ENST00000572579 PDE6HQ13956 83 aa12.52□□□□□ -0.41
CHD3-214ENST00000572579 CLINT1Q14677 625 aa12.52□□□□□ -0.41
CHD3-214ENST00000572579 ICAM4Q14773 271 aa12.52□□□□□ -0.41
CHD3-214ENST00000572579 C9orf47Q6ZRZ4 202 aa12.52□□□□□ -0.41
CHD3-214ENST00000572579 FXYD5Q96DB9 178 aa12.52□□□□□ -0.41
CHD3-214ENST00000572579 ZNF503Q96F45 646 aa12.52□□□□□ -0.41
CHD3-214ENST00000572579 LINC00477Q96M19 166 aa12.52□□□□□ -0.41
CHD3-214ENST00000572579 LINC00467Q9BRT7 94 aa12.52□□□□□ -0.41
CHD3-214ENST00000572579 KLF12Q9Y4X4 402 aa12.52□□□□□ -0.41
CHD3-214ENST00000572579 TIMM9Q9Y5J7 89 aa12.52□□□□□ -0.41
CHD3-214ENST00000572579 CRISP2P16562 243 aa12.51□□□□□ -0.41
CHD3-214ENST00000572579 LRRC37A5PQ49AS3 106 aa12.51□□□□□ -0.41
CHD3-214ENST00000572579 FAM122CQ6P4D5 195 aa12.51□□□□□ -0.41
CHD3-214ENST00000572579 NMES1Q9C002 83 aa12.51□□□□□ -0.41
CHD3-214ENST00000572579 WDR61Q9GZS3 305 aaKnown RBP12.51□□□□□ -0.41
CHD3-214ENST00000572579 PRELID1Q9Y255 219 aa12.51□□□□□ -0.41
CHD3-214ENST00000572579 SNURFLB1AK76 121 aa12.5□□□□□ -0.41
CHD3-214ENST00000572579 NBEAP1P0C6P0 100 aa12.5□□□□□ -0.41
CHD3-214ENST00000572579 ANXA2RQ3ZCQ2 193 aa12.5□□□□□ -0.41
CHD3-214ENST00000572579 S100ZQ8WXG8 99 aa12.5□□□□□ -0.41
CHD3-214ENST00000572579 A6NHS1 94 aa12.49□□□□□ -0.41
CHD3-214ENST00000572579 E5RGE8 158 aa12.49□□□□□ -0.41
CHD3-214ENST00000572579 OR10J4P0C629 311 aa12.49□□□□□ -0.41
CHD3-214ENST00000572579 PHYHIPLQ96FC7 376 aa12.49□□□□□ -0.41
CHD3-214ENST00000572579 C18orf15Q96N68 181 aa12.49□□□□□ -0.41
CHD3-214ENST00000572579 OR51M1Q9H341 326 aa12.49□□□□□ -0.41
CHD3-214ENST00000572579 A0A096LPF7 62 aa12.48□□□□□ -0.41
CHD3-214ENST00000572579 H3BNG1 76 aa12.48□□□□□ -0.41
CHD3-214ENST00000572579 SPINK4O60575 86 aa12.48□□□□□ -0.41
CHD3-214ENST00000572579 EIF3GO75821 320 aaKnown RBP eCLIP12.48□□□□□ -0.41
CHD3-214ENST00000572579 ENKURQ8TC29 256 aa12.48□□□□□ -0.41
CHD3-214ENST00000572579 UPK3BQ9BT76 320 aa12.48□□□□□ -0.41
CHD3-214ENST00000572579 SLC25A31Q9H0C2 315 aa12.48□□□□□ -0.41
CHD3-214ENST00000572579 ZNF492Q9P255 531 aa12.48□□□□□ -0.41
CHD3-214ENST00000572579 INMT-MINDY4F8WBC2 141 aa12.47□□□□□ -0.41
CHD3-214ENST00000572579 EIF4E3Q8N5X7 224 aaKnown RBP12.47□□□□□ -0.41
CHD3-214ENST00000572579 Q8TAT8 98 aa12.47□□□□□ -0.41
CHD3-214ENST00000572579 MARVELD1Q9BSK0 173 aa12.47□□□□□ -0.41
CHD3-214ENST00000572579 PAXXQ9BUH6 204 aa12.47□□□□□ -0.41
CHD3-214ENST00000572579 TRGV1A0A0A0MS02 117 aa12.46□□□□□ -0.41
CHD3-214ENST00000572579 GPX1P07203 203 aa12.46□□□□□ -0.41
CHD3-214ENST00000572579 NMBP08949 121 aa12.46□□□□□ -0.41
CHD3-214ENST00000572579 TCL1AP56279 114 aa12.46□□□□□ -0.41
CHD3-214ENST00000572579 PPP1R1CQ8WVI7 109 aa12.46□□□□□ -0.41
CHD3-214ENST00000572579 Q9H3A6 140 aa12.46□□□□□ -0.41
CHD3-214ENST00000572579 FUT9Q9Y231 359 aa12.46□□□□□ -0.41
CHD3-214ENST00000572579 MRPS16Q9Y3D3 137 aaKnown RBP12.46□□□□□ -0.41
CHD3-214ENST00000572579 TRGV2A0A075B6R0 118 aa12.45□□□□□ -0.42
CHD3-214ENST00000572579 C16orf90A8MZG2 172 aa12.45□□□□□ -0.42
CHD3-214ENST00000572579 ZNF680Q8NEM1 530 aa12.45□□□□□ -0.42
CHD3-214ENST00000572579 AAMDCQ9H7C9 122 aa12.45□□□□□ -0.42
CHD3-214ENST00000572579 WFDC1Q9HC57 220 aa12.45□□□□□ -0.42
CHD3-214ENST00000572579 RANP62826 216 aaKnown RBP12.44□□□□□ -0.42
CHD3-214ENST00000572579 ATP5SQ99766 215 aa12.44□□□□□ -0.42
CHD3-214ENST00000572579 MRPL32Q9BYC8 188 aaKnown RBP12.44□□□□□ -0.42
CHD3-214ENST00000572579 IGHV1OR15-1A0A075B7D0 117 aa12.43□□□□□ -0.42
CHD3-214ENST00000572579 PRAF2O60831 178 aa12.43□□□□□ -0.42
CHD3-214ENST00000572579 MPC2O95563 127 aa12.43□□□□□ -0.42
CHD3-214ENST00000572579 ZNF138P52744 262 aa12.43□□□□□ -0.42
CHD3-214ENST00000572579 KRTAP10-2P60368 255 aa12.43□□□□□ -0.42
CHD3-214ENST00000572579 CYCSP99999 105 aaKnown RBP12.43□□□□□ -0.42
CHD3-214ENST00000572579 IBA57Q5T440 356 aaKnown RBP12.43□□□□□ -0.42
CHD3-214ENST00000572579 TMEM78Q5T7P6 136 aa12.43□□□□□ -0.42
CHD3-214ENST00000572579 MRPL16Q9NX20 251 aaKnown RBP12.43□□□□□ -0.42
CHD3-214ENST00000572579 MDFICQ9P1T7 246 aa12.43□□□□□ -0.42
CHD3-214ENST00000572579 IGHV3-53P01767 116 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms