RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 CLEC3BP05452 202 aa8.39□□□□□ -1.07
CCDC40-207ENST00000572253 FABP2P12104 132 aa8.39□□□□□ -1.07
CCDC40-207ENST00000572253 PRTN3P24158 256 aa8.39□□□□□ -1.07
CCDC40-207ENST00000572253 Q8NA96 180 aa8.39□□□□□ -1.07
CCDC40-207ENST00000572253 MEGF9Q9H1U4 602 aa8.39□□□□□ -1.07
CCDC40-207ENST00000572253 SPCS1Q9Y6A9 102 aa8.39□□□□□ -1.07
CCDC40-207ENST00000572253 FAM90A27PA6NNH2 459 aa8.39□□□□□ -1.07
CCDC40-207ENST00000572253 ZNF207O43670 478 aaKnown RBP8.39□□□□□ -1.07
CCDC40-207ENST00000572253 CIDEAO60543 219 aa8.39□□□□□ -1.07
CCDC40-207ENST00000572253 SMIM13P0DJ93 91 aa8.39□□□□□ -1.07
CCDC40-207ENST00000572253 PRSS57Q6UWY2 283 aa8.39□□□□□ -1.07
CCDC40-207ENST00000572253 PIP4P2Q8N4L2 257 aa8.39□□□□□ -1.07
CCDC40-207ENST00000572253 DKK2Q9UBU2 259 aa8.39□□□□□ -1.07
CCDC40-207ENST00000572253 OOSP1A8MZH6 123 aa8.38□□□□□ -1.07
CCDC40-207ENST00000572253 FOXE3Q13461 319 aa8.38□□□□□ -1.07
CCDC40-207ENST00000572253 PCP2Q8IVA1 136 aa8.38□□□□□ -1.07
CCDC40-207ENST00000572253 SMPXQ9UHP9 88 aa8.38□□□□□ -1.07
CCDC40-207ENST00000572253 ATP5LO75964 103 aa8.38□□□□□ -1.07
CCDC40-207ENST00000572253 TNFRSF6BO95407 300 aa8.38□□□□□ -1.07
CCDC40-207ENST00000572253 GCSHP23434 173 aa8.38□□□□□ -1.07
CCDC40-207ENST00000572253 ZNF80P51504 273 aaPredicted RBP8.38□□□□□ -1.07
CCDC40-207ENST00000572253 IGFL4Q6B9Z1 124 aa8.38□□□□□ -1.07
CCDC40-207ENST00000572253 UFSP1Q6NVU6 142 aa8.38□□□□□ -1.07
CCDC40-207ENST00000572253 ADAMTSL5Q6ZMM2 481 aa8.38□□□□□ -1.07
CCDC40-207ENST00000572253 GOSR1O95249 250 aa8.37□□□□□ -1.07
CCDC40-207ENST00000572253 IGKCP01834 107 aa8.37□□□□□ -1.07
CCDC40-207ENST00000572253 PAX8Q06710 450 aa8.37□□□□□ -1.07
CCDC40-207ENST00000572253 NAA38Q9BRA0 125 aaKnown RBP8.37□□□□□ -1.07
CCDC40-207ENST00000572253 SLC50A1Q9BRV3 221 aa8.37□□□□□ -1.07
CCDC40-207ENST00000572253 CREBBPQ92793 2442 aa8.37□□□□□ -1.07
CCDC40-207ENST00000572253 ODF3BA8MYP8 253 aa8.37□□□□□ -1.07
CCDC40-207ENST00000572253 F8W735 103 aaPredicted RBP8.37□□□□□ -1.07
CCDC40-207ENST00000572253 CTSGP08311 255 aa8.37□□□□□ -1.07
CCDC40-207ENST00000572253 PIFOQ8TCI5 191 aa8.37□□□□□ -1.07
CCDC40-207ENST00000572253 LOC400499M0QZD8 3231 aa8.37□□□□□ -1.07
CCDC40-207ENST00000572253 A0A1W2PPM0 123 aa8.37□□□□□ -1.07
CCDC40-207ENST00000572253 HLA-DMBP28068 263 aa8.37□□□□□ -1.07
CCDC40-207ENST00000572253 PRR30Q53SZ7 412 aaPredicted RBP8.37□□□□□ -1.07
CCDC40-207ENST00000572253 JMJD8Q96S16 334 aa8.37□□□□□ -1.07
CCDC40-207ENST00000572253 FOXC2Q99958 501 aa8.37□□□□□ -1.07
CCDC40-207ENST00000572253 CNFNQ9BYD5 112 aa8.37□□□□□ -1.07
CCDC40-207ENST00000572253 A0A1B0GV72 72 aa8.37□□□□□ -1.07
CCDC40-207ENST00000572253 DPM2O94777 84 aa8.37□□□□□ -1.07
CCDC40-207ENST00000572253 NDPQ00604 133 aa8.37□□□□□ -1.07
CCDC40-207ENST00000572253 VMO1Q7Z5L0 202 aa8.37□□□□□ -1.07
CCDC40-207ENST00000572253 RNF185Q96GF1 192 aa8.37□□□□□ -1.07
CCDC40-207ENST00000572253 MSRB1Q9NZV6 116 aa8.37□□□□□ -1.07
CCDC40-207ENST00000572253 HIGD1BQ9P298 99 aa8.37□□□□□ -1.07
CCDC40-207ENST00000572253 EVI2AP22794 236 aa8.36□□□□□ -1.07
CCDC40-207ENST00000572253 IGHV3-35A0A0C4DH35 117 aa8.36□□□□□ -1.07
CCDC40-207ENST00000572253 TM4SF20Q53R12 229 aa8.36□□□□□ -1.07
CCDC40-207ENST00000572253 MINOS1Q5TGZ0 78 aa8.36□□□□□ -1.07
CCDC40-207ENST00000572253 Q8N8P6 123 aa8.36□□□□□ -1.07
CCDC40-207ENST00000572253 MYOZ3Q8TDC0 251 aa8.36□□□□□ -1.07
CCDC40-207ENST00000572253 SMAD5-AS1Q9Y6J3 95 aa8.36□□□□□ -1.07
CCDC40-207ENST00000572253 MINOS1-NBL1R4GNA1 71 aa8.36□□□□□ -1.07
CCDC40-207ENST00000572253 IGHV3OR16-8A0A075B7F1 116 aa8.36□□□□□ -1.07
CCDC40-207ENST00000572253 RBAKDNA6NC62 111 aa8.36□□□□□ -1.07
CCDC40-207ENST00000572253 ERCC8Q13216 396 aa8.36□□□□□ -1.07
CCDC40-207ENST00000572253 ODF1Q14990 250 aa8.36□□□□□ -1.07
CCDC40-207ENST00000572253 SAMD5Q5TGI4 173 aa8.36□□□□□ -1.07
CCDC40-207ENST00000572253 DYNAPQ8N1N2 210 aa8.36□□□□□ -1.07
CCDC40-207ENST00000572253 TMEM158Q8WZ71 300 aa8.36□□□□□ -1.07
CCDC40-207ENST00000572253 SAP30O75446 220 aa8.35□□□□□ -1.07
CCDC40-207ENST00000572253 TMEM78Q5T7P6 136 aa8.35□□□□□ -1.07
CCDC40-207ENST00000572253 CSTL1Q9H114 145 aa8.35□□□□□ -1.07
CCDC40-207ENST00000572253 PPIFP30405 207 aaKnown RBP8.35□□□□□ -1.07
CCDC40-207ENST00000572253 CHAC1Q9BUX1 264 aa8.35□□□□□ -1.07
CCDC40-207ENST00000572253 LINC01546A6NGU7 62 aa8.35□□□□□ -1.07
CCDC40-207ENST00000572253 LY6HO94772 140 aa8.35□□□□□ -1.07
CCDC40-207ENST00000572253 NOTCH3Q9UM47 2321 aa8.34□□□□□ -1.07
CCDC40-207ENST00000572253 MUC3AQ02505 3323 aa8.34□□□□□ -1.07
CCDC40-207ENST00000572253 ECSCRQ19T08 205 aa8.34□□□□□ -1.07
CCDC40-207ENST00000572253 C1orf122Q6ZSJ8 110 aa8.34□□□□□ -1.07
CCDC40-207ENST00000572253 DTX2Q86UW9 622 aa8.34□□□□□ -1.07
CCDC40-207ENST00000572253 FAM110DQ8TAY7 271 aaPredicted RBP8.34□□□□□ -1.07
CCDC40-207ENST00000572253 UFC1Q9Y3C8 167 aa8.34□□□□□ -1.07
CCDC40-207ENST00000572253 C15orf32Q32M92 178 aa8.34□□□□□ -1.07
CCDC40-207ENST00000572253 ANKHD1Q8IWZ3 2542 aaKnown RBP8.34□□□□□ -1.07
CCDC40-207ENST00000572253 IL17RELQ6ZVW7 336 aa8.34□□□□□ -1.07
CCDC40-207ENST00000572253 IGHV7-81A0A0B4J1V7 117 aa8.33□□□□□ -1.08
CCDC40-207ENST00000572253 IGHG4P01861 327 aa8.33□□□□□ -1.08
CCDC40-207ENST00000572253 SMIM17P0DL12 118 aa8.33□□□□□ -1.08
CCDC40-207ENST00000572253 ZC2HC1BQ5TFG8 222 aa8.33□□□□□ -1.08
CCDC40-207ENST00000572253 GTSCR1Q86UQ5 136 aa8.33□□□□□ -1.08
CCDC40-207ENST00000572253 Q8N6K4 173 aa8.33□□□□□ -1.08
CCDC40-207ENST00000572253 ZMAT4Q9H898 229 aa8.33□□□□□ -1.08
CCDC40-207ENST00000572253 TMEM160Q9NX00 188 aa8.33□□□□□ -1.08
CCDC40-207ENST00000572253 EBI3Q14213 229 aa8.33□□□□□ -1.08
CCDC40-207ENST00000572253 LAGE3Q14657 143 aa8.33□□□□□ -1.08
CCDC40-207ENST00000572253 PRAC2D3DTV9 90 aa8.33□□□□□ -1.08
CCDC40-207ENST00000572253 G3V4G9 280 aa8.33□□□□□ -1.08
CCDC40-207ENST00000572253 RIPPLY3P57055 190 aa8.33□□□□□ -1.08
CCDC40-207ENST00000572253 SPANXN1Q5VSR9 72 aa8.33□□□□□ -1.08
CCDC40-207ENST00000572253 ZNF502Q8TBZ5 544 aa8.33□□□□□ -1.08
CCDC40-207ENST00000572253 METTL26Q96S19 204 aa8.33□□□□□ -1.08
CCDC40-207ENST00000572253 BUB3O43684 328 aa8.32□□□□□ -1.08
CCDC40-207ENST00000572253 RNF182Q8N6D2 247 aa8.32□□□□□ -1.08
CCDC40-207ENST00000572253 SELENOKQ9Y6D0 94 aa8.32□□□□□ -1.08
CCDC40-207ENST00000572253 TMEM8BA6NDV4 472 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms